Wall clock time and date at job start Tue Mar 31 2020 10:42:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47153 * 2 1 4 4 N 1.46893 * 109.47432 * 174.86082 * 3 2 1 5 5 C 1.47901 * 111.00382 * 175.71149 * 4 3 2 6 6 C 1.53995 * 107.05737 * 214.15308 * 5 4 3 7 7 H 1.09004 * 110.30812 * 120.14058 * 6 5 4 8 8 C 1.52998 * 110.31011 * 242.20467 * 6 5 4 9 9 C 1.54594 * 105.14194 * 1.22549 * 6 5 4 10 10 H 1.08996 * 110.72125 * 263.59779 * 9 6 5 11 11 C 1.52998 * 110.72440 * 140.49276 * 9 6 5 12 12 C 1.53004 * 109.47160 * 174.99898 * 11 9 6 13 13 N 1.46497 * 109.47032 * 179.97438 * 12 11 9 14 14 C 1.34779 * 119.99763 * 179.97438 * 13 12 11 15 15 O 1.21279 * 120.00064 * 0.02562 * 14 13 12 16 16 C 1.50695 * 119.99796 * 180.02562 * 14 13 12 17 17 S 1.81004 * 109.47282 * 180.02562 * 16 14 13 18 18 C 1.76197 * 100.00255 * 179.97438 * 17 16 14 19 19 H 1.07996 * 120.00181 * 359.97438 * 18 17 16 20 20 C 1.38802 * 119.99793 * 180.02562 * 18 17 16 21 21 N 1.31625 * 120.00168 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99816 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.46878 * 59.99855 * 22 20 18 24 24 H 1.48499 * 109.47051 * 179.97438 * 22 20 18 25 25 H 1.48493 * 109.46923 * 299.99592 * 22 20 18 26 26 C 1.48537 * 111.00215 * 58.31334 * 4 3 2 27 27 H 1.09002 * 109.46964 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47381 * 299.99865 * 1 2 3 29 29 H 1.09005 * 109.47236 * 59.99997 * 1 2 3 30 30 H 1.09001 * 109.47123 * 240.00466 * 2 1 3 31 31 H 1.08996 * 109.47270 * 120.00208 * 2 1 3 32 32 H 1.09006 * 109.47009 * 294.85930 * 3 2 1 33 33 H 1.09000 * 109.47357 * 54.85937 * 3 2 1 34 34 H 1.08997 * 109.91904 * 333.50706 * 5 4 3 35 35 H 1.08999 * 109.91611 * 94.60602 * 5 4 3 36 36 H 1.09008 * 109.46851 * 58.55110 * 8 6 5 37 37 H 1.09004 * 109.47390 * 178.54775 * 8 6 5 38 38 H 1.08993 * 109.47508 * 298.55300 * 8 6 5 39 39 H 1.09003 * 109.47146 * 294.99847 * 11 9 6 40 40 H 1.08999 * 109.46949 * 54.99849 * 11 9 6 41 41 H 1.09003 * 109.47049 * 300.00008 * 12 11 9 42 42 H 1.08999 * 109.46705 * 60.00085 * 12 11 9 43 43 H 0.96996 * 120.00294 * 0.02562 * 13 12 11 44 44 H 1.09003 * 109.47159 * 299.99951 * 16 14 13 45 45 H 1.08998 * 109.47760 * 60.00167 * 16 14 13 46 46 H 0.97002 * 119.99873 * 180.02562 * 21 20 18 47 47 H 1.09000 * 110.66780 * 278.15868 * 26 4 3 48 48 H 1.08995 * 110.66581 * 41.29018 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5036 1.4444 0.1241 5 6 4.0423 2.8183 0.0249 6 6 5.4063 2.7187 -0.6829 7 1 5.3986 3.3030 -1.6030 8 6 6.5223 3.2044 0.2442 9 6 5.5868 1.2169 -1.0025 10 1 6.1870 0.7287 -0.2348 11 6 6.2198 1.0293 -2.3827 12 6 6.4996 -0.4564 -2.6178 13 7 7.1051 -0.6360 -3.9396 14 6 7.4400 -1.8702 -4.3653 15 8 7.2395 -2.8321 -3.6543 16 6 8.0634 -2.0550 -5.7247 17 16 8.3943 -3.8126 -6.0030 18 6 9.0988 -3.7397 -7.6163 19 1 9.2066 -2.7884 -8.1160 20 6 9.5141 -4.9051 -8.2455 21 7 9.3822 -6.0647 -7.6367 22 14 10.2604 -4.8280 -9.9563 23 1 11.4805 -3.9819 -9.9264 24 1 10.6196 -6.1982 -10.4019 25 1 9.2749 -4.2424 -10.9002 26 6 4.1329 0.6818 -0.9845 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.7537 1.9290 -0.9325 33 1 1.6034 1.9822 0.8403 34 1 3.3653 3.4412 -0.5596 35 1 4.1679 3.2407 1.0218 36 1 6.5254 2.6045 1.1543 37 1 7.4833 3.1040 -0.2604 38 1 6.3534 4.2505 0.4992 39 1 5.5364 1.3960 -3.1487 40 1 7.1547 1.5875 -2.4325 41 1 7.1829 -0.8231 -1.8518 42 1 5.5646 -1.0144 -2.5680 43 1 7.2658 0.1333 -4.5081 44 1 7.3799 -1.6886 -6.4907 45 1 8.9982 -1.4966 -5.7748 46 1 9.6729 -6.8791 -8.0763 47 1 4.1191 -0.3873 -0.7723 48 1 3.6331 0.8940 -1.9296 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001102676183.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:42:41 Heat of formation + Delta-G solvation = -62.155738 kcal Electronic energy + Delta-G solvation = -23442.853326 eV Core-core repulsion = 20043.712423 eV Total energy + Delta-G solvation = -3399.140903 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.177 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.00696 -39.02599 -36.01789 -34.74243 -32.44571 -32.41038 -31.83729 -29.49855 -27.52043 -26.90192 -25.49745 -24.77972 -23.10723 -21.44767 -20.78926 -20.59240 -19.92454 -17.82000 -16.38544 -16.26911 -15.90039 -15.81143 -15.63962 -15.17830 -14.79711 -14.44422 -14.18801 -14.03107 -13.87637 -13.60210 -13.43704 -13.14575 -12.90855 -12.57690 -12.52365 -12.29072 -12.20312 -12.13010 -11.78805 -11.59134 -11.44798 -11.15075 -11.03748 -11.03339 -10.99472 -10.99077 -10.84170 -10.76058 -10.64384 -9.81479 -9.37195 -9.05590 -8.85016 -8.75153 -8.22753 -6.49005 -6.20635 -3.91224 3.05285 3.13011 3.23931 3.28032 3.31872 3.60230 3.76485 4.17315 4.21388 4.23718 4.42952 4.62751 4.72598 4.78547 4.90791 4.99678 5.01092 5.08019 5.14253 5.14845 5.17597 5.23352 5.24411 5.25935 5.35580 5.39259 5.43619 5.52591 5.60838 5.63740 5.67621 5.72409 5.77410 5.81192 5.86204 5.86499 5.92514 5.94486 5.99744 6.08122 6.15111 6.55873 6.65494 6.72467 7.59986 7.73788 8.35831 8.64485 9.24381 10.86726 Molecular weight = 314.18amu Principal moments of inertia in cm(-1) A = 0.020280 B = 0.002086 C = 0.001952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.338996 B =13417.912468 C =14344.373078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.125 4.125 3 C 0.047 3.953 4 N -0.518 5.518 5 C 0.039 3.961 6 C -0.098 4.098 7 H 0.075 0.925 8 C -0.142 4.142 9 C -0.084 4.084 10 H 0.089 0.911 11 C -0.121 4.121 12 C 0.121 3.879 13 N -0.740 5.740 14 C 0.530 3.470 15 O -0.518 6.518 16 C -0.153 4.153 17 S -0.060 6.060 18 C -0.536 4.536 19 H 0.072 0.928 20 C 0.073 3.927 21 N -0.868 5.868 22 Si 0.919 3.081 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.274 1.274 26 C 0.037 3.963 27 H 0.057 0.943 28 H 0.054 0.946 29 H 0.052 0.948 30 H 0.063 0.937 31 H 0.072 0.928 32 H 0.033 0.967 33 H 0.073 0.927 34 H 0.041 0.959 35 H 0.079 0.921 36 H 0.060 0.940 37 H 0.057 0.943 38 H 0.053 0.947 39 H 0.068 0.932 40 H 0.072 0.928 41 H 0.066 0.934 42 H 0.065 0.935 43 H 0.397 0.603 44 H 0.089 0.911 45 H 0.089 0.911 46 H 0.269 0.731 47 H 0.086 0.914 48 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.700 21.356 15.272 29.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.163 4.163 3 C -0.081 4.081 4 N -0.242 5.242 5 C -0.089 4.089 6 C -0.117 4.117 7 H 0.094 0.906 8 C -0.199 4.199 9 C -0.103 4.103 10 H 0.108 0.892 11 C -0.159 4.159 12 C -0.003 4.003 13 N -0.395 5.395 14 C 0.316 3.684 15 O -0.392 6.392 16 C -0.304 4.304 17 S 0.166 5.834 18 C -0.684 4.684 19 H 0.090 0.910 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.200 1.200 26 C -0.090 4.090 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.082 0.918 31 H 0.090 0.910 32 H 0.051 0.949 33 H 0.092 0.908 34 H 0.060 0.940 35 H 0.097 0.903 36 H 0.079 0.921 37 H 0.076 0.924 38 H 0.072 0.928 39 H 0.087 0.913 40 H 0.091 0.909 41 H 0.084 0.916 42 H 0.083 0.917 43 H 0.231 0.769 44 H 0.107 0.893 45 H 0.107 0.893 46 H 0.079 0.921 47 H 0.104 0.896 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -12.913 19.308 16.981 28.774 hybrid contribution 0.494 1.964 -3.018 3.635 sum -12.420 21.273 13.963 28.315 Atomic orbital electron populations 1.21733 0.95540 1.01970 1.01633 1.21561 0.95657 0.96121 1.02935 1.22339 0.87909 0.97578 1.00269 1.64797 1.05371 1.10626 1.43380 1.22956 0.94991 0.90308 1.00604 1.22034 0.94758 0.96145 0.98775 0.90646 1.21822 0.97821 1.00809 0.99448 1.22108 0.95998 0.95163 0.97059 0.89239 1.21816 1.01409 0.95995 0.96720 1.21288 0.98484 0.95502 0.85013 1.46017 1.65541 1.09081 1.18850 1.20304 0.77522 0.82345 0.88183 1.90702 1.52526 1.39341 1.56623 1.23531 1.02952 1.08192 0.95740 1.85399 1.80228 0.96061 1.21696 1.22828 1.47316 0.96138 1.02150 0.90994 1.24995 0.95423 0.94529 0.98661 1.70008 1.44524 0.97967 1.37782 0.86223 0.79415 0.77415 0.82438 1.19944 1.20811 1.19952 1.23356 0.93613 0.99430 0.92612 0.92364 0.92718 0.92913 0.91831 0.90952 0.94898 0.90824 0.94015 0.90264 0.92110 0.92423 0.92750 0.91330 0.90894 0.91591 0.91685 0.76937 0.89289 0.89259 0.92129 0.89604 0.93539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.91 37.16 0.37 -0.60 16 2 C -0.12 -0.94 5.61 -26.73 -0.15 -1.09 16 3 C 0.05 0.36 4.84 -3.83 -0.02 0.34 16 4 N -0.52 -4.35 5.35 -230.46 -1.23 -5.58 16 5 C 0.04 0.28 6.36 -2.75 -0.02 0.27 16 6 C -0.10 -0.66 3.16 -89.26 -0.28 -0.94 16 7 H 0.08 0.48 7.85 -51.93 -0.41 0.08 16 8 C -0.14 -0.87 8.90 37.16 0.33 -0.54 16 9 C -0.08 -0.65 2.58 -88.76 -0.23 -0.88 16 10 H 0.09 0.76 7.86 -51.93 -0.41 0.35 16 11 C -0.12 -0.95 4.71 -26.73 -0.13 -1.08 16 12 C 0.12 1.39 5.57 -4.04 -0.02 1.36 16 13 N -0.74 -9.85 5.56 -60.30 -0.33 -10.18 16 14 C 0.53 10.00 7.85 -10.99 -0.09 9.92 16 15 O -0.52 -11.94 15.86 5.56 0.09 -11.85 16 16 C -0.15 -3.12 6.16 36.00 0.22 -2.89 16 17 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 18 C -0.54 -15.35 9.50 30.94 0.29 -15.05 16 19 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 20 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 21 N -0.87 -26.29 13.22 55.49 0.73 -25.56 16 22 Si 0.92 21.46 29.55 -169.99 -5.02 16.44 16 23 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 25 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 26 C 0.04 0.32 4.22 -1.90 -0.01 0.31 16 27 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.52 7.18 -51.93 -0.37 0.15 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.03 0.25 7.97 -51.93 -0.41 -0.17 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.04 0.29 7.67 -51.93 -0.40 -0.11 16 35 H 0.08 0.55 7.69 -51.93 -0.40 0.15 16 36 H 0.06 0.41 8.14 -51.92 -0.42 -0.02 16 37 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 39 H 0.07 0.51 8.00 -51.93 -0.42 0.09 16 40 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.06 0.81 7.67 -51.93 -0.40 0.41 16 43 H 0.40 4.06 8.47 -40.82 -0.35 3.71 16 44 H 0.09 1.66 8.14 -51.91 -0.42 1.24 16 45 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 46 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 47 H 0.09 0.80 7.75 -51.93 -0.40 0.39 16 48 H 0.05 0.40 7.83 -51.93 -0.41 -0.01 16 LS Contribution 396.04 15.07 5.97 5.97 Total: -1.00 -33.84 396.04 -10.82 -44.66 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: -8.99 Total: -1.15 kcal Atomic # 6 Polarization: -9.05 SS G_CDS: 0.18 Total: -8.87 kcal Atomic # 7 Polarization: -40.49 SS G_CDS: -0.83 Total: -41.32 kcal Atomic # 8 Polarization: -11.94 SS G_CDS: 0.09 Total: -11.85 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -33.84 -10.82 -44.66 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102676183.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.495 kcal (2) G-P(sol) polarization free energy of solvation -33.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds