Wall clock time and date at job start Tue Mar 31 2020 10:42:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47153 * 2 1 4 4 N 1.46893 * 109.47432 * 174.86082 * 3 2 1 5 5 C 1.47901 * 111.00382 * 175.71149 * 4 3 2 6 6 C 1.53995 * 107.05737 * 214.15308 * 5 4 3 7 7 H 1.09004 * 110.30812 * 120.14058 * 6 5 4 8 8 C 1.52998 * 110.31011 * 242.20467 * 6 5 4 9 9 C 1.54594 * 105.14194 * 1.22549 * 6 5 4 10 10 H 1.08996 * 110.72125 * 263.59779 * 9 6 5 11 11 C 1.52998 * 110.72440 * 140.49276 * 9 6 5 12 12 C 1.53004 * 109.47160 * 174.99898 * 11 9 6 13 13 N 1.46497 * 109.47032 * 179.97438 * 12 11 9 14 14 C 1.34779 * 119.99763 * 179.97438 * 13 12 11 15 15 O 1.21279 * 120.00064 * 0.02562 * 14 13 12 16 16 C 1.50695 * 119.99796 * 180.02562 * 14 13 12 17 17 S 1.81004 * 109.47282 * 180.02562 * 16 14 13 18 18 C 1.76197 * 100.00255 * 179.97438 * 17 16 14 19 19 H 1.07996 * 120.00181 * 359.97438 * 18 17 16 20 20 C 1.38802 * 119.99793 * 180.02562 * 18 17 16 21 21 N 1.31625 * 120.00168 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99816 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.46878 * 59.99855 * 22 20 18 24 24 H 1.48499 * 109.47051 * 179.97438 * 22 20 18 25 25 H 1.48493 * 109.46923 * 299.99592 * 22 20 18 26 26 C 1.48537 * 111.00215 * 58.31334 * 4 3 2 27 27 H 1.09002 * 109.46964 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47381 * 299.99865 * 1 2 3 29 29 H 1.09005 * 109.47236 * 59.99997 * 1 2 3 30 30 H 1.09001 * 109.47123 * 240.00466 * 2 1 3 31 31 H 1.08996 * 109.47270 * 120.00208 * 2 1 3 32 32 H 1.09006 * 109.47009 * 294.85930 * 3 2 1 33 33 H 1.09000 * 109.47357 * 54.85937 * 3 2 1 34 34 H 1.08997 * 109.91904 * 333.50706 * 5 4 3 35 35 H 1.08999 * 109.91611 * 94.60602 * 5 4 3 36 36 H 1.09008 * 109.46851 * 58.55110 * 8 6 5 37 37 H 1.09004 * 109.47390 * 178.54775 * 8 6 5 38 38 H 1.08993 * 109.47508 * 298.55300 * 8 6 5 39 39 H 1.09003 * 109.47146 * 294.99847 * 11 9 6 40 40 H 1.08999 * 109.46949 * 54.99849 * 11 9 6 41 41 H 1.09003 * 109.47049 * 300.00008 * 12 11 9 42 42 H 1.08999 * 109.46705 * 60.00085 * 12 11 9 43 43 H 0.96996 * 120.00294 * 0.02562 * 13 12 11 44 44 H 1.09003 * 109.47159 * 299.99951 * 16 14 13 45 45 H 1.08998 * 109.47760 * 60.00167 * 16 14 13 46 46 H 0.97002 * 119.99873 * 180.02562 * 21 20 18 47 47 H 1.09000 * 110.66780 * 278.15868 * 26 4 3 48 48 H 1.08995 * 110.66581 * 41.29018 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5036 1.4444 0.1241 5 6 4.0423 2.8183 0.0249 6 6 5.4063 2.7187 -0.6829 7 1 5.3986 3.3030 -1.6030 8 6 6.5223 3.2044 0.2442 9 6 5.5868 1.2169 -1.0025 10 1 6.1870 0.7287 -0.2348 11 6 6.2198 1.0293 -2.3827 12 6 6.4996 -0.4564 -2.6178 13 7 7.1051 -0.6360 -3.9396 14 6 7.4400 -1.8702 -4.3653 15 8 7.2395 -2.8321 -3.6543 16 6 8.0634 -2.0550 -5.7247 17 16 8.3943 -3.8126 -6.0030 18 6 9.0988 -3.7397 -7.6163 19 1 9.2066 -2.7884 -8.1160 20 6 9.5141 -4.9051 -8.2455 21 7 9.3822 -6.0647 -7.6367 22 14 10.2604 -4.8280 -9.9563 23 1 11.4805 -3.9819 -9.9264 24 1 10.6196 -6.1982 -10.4019 25 1 9.2749 -4.2424 -10.9002 26 6 4.1329 0.6818 -0.9845 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.7537 1.9290 -0.9325 33 1 1.6034 1.9822 0.8403 34 1 3.3653 3.4412 -0.5596 35 1 4.1679 3.2407 1.0218 36 1 6.5254 2.6045 1.1543 37 1 7.4833 3.1040 -0.2604 38 1 6.3534 4.2505 0.4992 39 1 5.5364 1.3960 -3.1487 40 1 7.1547 1.5875 -2.4325 41 1 7.1829 -0.8231 -1.8518 42 1 5.5646 -1.0144 -2.5680 43 1 7.2658 0.1333 -4.5081 44 1 7.3799 -1.6886 -6.4907 45 1 8.9982 -1.4966 -5.7748 46 1 9.6729 -6.8791 -8.0763 47 1 4.1191 -0.3873 -0.7723 48 1 3.6331 0.8940 -1.9296 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001102676183.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:42:40 Heat of formation + Delta-G solvation = -85.057606 kcal Electronic energy + Delta-G solvation = -23443.846425 eV Core-core repulsion = 20043.712423 eV Total energy + Delta-G solvation = -3400.134003 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.177 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.81336 -40.30244 -36.85565 -35.69303 -34.58254 -33.27154 -32.55528 -30.86850 -28.42631 -27.64582 -27.45140 -25.53304 -23.82637 -22.17689 -21.82202 -21.41750 -20.69949 -19.81227 -17.80401 -17.26859 -16.87738 -16.85334 -16.64357 -16.53710 -16.17288 -15.75209 -15.31596 -14.84100 -14.71190 -14.61734 -14.42038 -14.20472 -14.12716 -13.58854 -13.43752 -13.19546 -13.16675 -12.91570 -12.86209 -12.77272 -12.62530 -12.56414 -12.38796 -12.05134 -11.83365 -11.71741 -11.60388 -11.55860 -11.43596 -11.29706 -11.12640 -10.91935 -10.27676 -10.10469 -9.37269 -8.66933 -8.34153 -6.12629 1.27301 1.44333 1.47354 1.57147 1.62076 2.26750 2.31295 2.99744 3.02363 3.32826 3.55266 3.62536 3.81039 3.96113 4.04308 4.11838 4.16287 4.24876 4.29665 4.34783 4.41153 4.47708 4.51200 4.52910 4.58434 4.65875 4.69430 4.72237 4.78454 4.82793 4.91071 4.96594 5.03550 5.11538 5.17383 5.20542 5.22981 5.25448 5.33647 5.37020 5.41775 5.46554 5.49655 5.95676 6.12230 6.19923 6.52724 7.06777 7.26196 8.74836 Molecular weight = 314.18amu Principal moments of inertia in cm(-1) A = 0.020280 B = 0.002086 C = 0.001952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.338996 B =13417.912468 C =14344.373078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.123 4.123 3 C 0.049 3.951 4 N -0.532 5.532 5 C 0.039 3.961 6 C -0.092 4.092 7 H 0.086 0.914 8 C -0.139 4.139 9 C -0.081 4.081 10 H 0.079 0.921 11 C -0.106 4.106 12 C 0.121 3.879 13 N -0.713 5.713 14 C 0.531 3.469 15 O -0.568 6.568 16 C -0.129 4.129 17 S -0.155 6.155 18 C -0.547 4.547 19 H 0.084 0.916 20 C 0.012 3.988 21 N -0.912 5.912 22 Si 0.999 3.001 23 H -0.261 1.261 24 H -0.279 1.279 25 H -0.262 1.262 26 C 0.038 3.962 27 H 0.057 0.943 28 H 0.062 0.938 29 H 0.055 0.945 30 H 0.052 0.948 31 H 0.062 0.938 32 H 0.035 0.965 33 H 0.079 0.921 34 H 0.047 0.953 35 H 0.081 0.919 36 H 0.051 0.949 37 H 0.060 0.940 38 H 0.063 0.937 39 H 0.081 0.919 40 H 0.089 0.911 41 H 0.054 0.946 42 H 0.053 0.947 43 H 0.417 0.583 44 H 0.110 0.890 45 H 0.111 0.889 46 H 0.271 0.729 47 H 0.070 0.930 48 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.613 24.378 14.206 30.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.161 4.161 3 C -0.079 4.079 4 N -0.256 5.256 5 C -0.089 4.089 6 C -0.111 4.111 7 H 0.105 0.895 8 C -0.197 4.197 9 C -0.101 4.101 10 H 0.098 0.902 11 C -0.144 4.144 12 C -0.003 4.003 13 N -0.367 5.367 14 C 0.317 3.683 15 O -0.447 6.447 16 C -0.280 4.280 17 S 0.072 5.928 18 C -0.694 4.694 19 H 0.102 0.898 20 C -0.193 4.193 21 N -0.548 5.548 22 Si 0.821 3.179 23 H -0.186 1.186 24 H -0.204 1.204 25 H -0.186 1.186 26 C -0.089 4.089 27 H 0.076 0.924 28 H 0.081 0.919 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.081 0.919 32 H 0.053 0.947 33 H 0.098 0.902 34 H 0.066 0.934 35 H 0.099 0.901 36 H 0.070 0.930 37 H 0.079 0.921 38 H 0.082 0.918 39 H 0.100 0.900 40 H 0.107 0.893 41 H 0.073 0.927 42 H 0.072 0.928 43 H 0.254 0.746 44 H 0.128 0.872 45 H 0.129 0.871 46 H 0.080 0.920 47 H 0.088 0.912 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -12.837 22.405 15.921 30.335 hybrid contribution 0.400 1.111 -2.571 2.830 sum -12.436 23.516 13.350 29.764 Atomic orbital electron populations 1.21711 0.94559 1.02128 1.02184 1.21528 0.96511 0.96136 1.01908 1.22334 0.87545 0.97394 1.00589 1.64783 1.05883 1.11469 1.43421 1.22998 0.95317 0.89641 1.00957 1.22009 0.94647 0.95126 0.99313 0.89539 1.21800 0.97691 1.01223 0.98943 1.22056 0.95223 0.96072 0.96705 0.90215 1.21722 1.02523 0.93102 0.97071 1.21414 0.97386 0.98096 0.83394 1.45764 1.63503 1.07811 1.19596 1.20102 0.77457 0.83394 0.87377 1.90692 1.54905 1.41351 1.57707 1.23373 1.04673 1.02582 0.97394 1.85603 1.80827 1.03624 1.22697 1.23172 1.47252 0.96888 1.02115 0.89826 1.26155 0.95702 0.93936 1.03495 1.70181 1.45787 0.98874 1.39955 0.84991 0.78835 0.77720 0.76367 1.18602 1.20448 1.18613 1.23293 0.94275 0.98697 0.92661 0.92435 0.91939 0.92549 0.92891 0.91942 0.94685 0.90217 0.93414 0.90071 0.92988 0.92143 0.91758 0.89998 0.89254 0.92736 0.92847 0.74596 0.87165 0.87113 0.91998 0.91179 0.93540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 9.91 71.98 0.71 -1.08 16 2 C -0.12 -1.84 5.61 30.59 0.17 -1.67 16 3 C 0.05 0.70 4.84 86.30 0.42 1.12 16 4 N -0.53 -8.48 5.35 -883.04 -4.73 -13.21 16 5 C 0.04 0.49 6.36 86.45 0.55 1.04 16 6 C -0.09 -1.03 3.16 -9.92 -0.03 -1.06 16 7 H 0.09 0.82 7.85 -2.38 -0.02 0.80 16 8 C -0.14 -1.42 8.90 71.98 0.64 -0.78 16 9 C -0.08 -1.13 2.58 -9.59 -0.02 -1.16 16 10 H 0.08 1.30 7.86 -2.39 -0.02 1.28 16 11 C -0.11 -1.40 4.71 30.59 0.14 -1.26 16 12 C 0.12 2.63 5.57 86.38 0.48 3.11 16 13 N -0.71 -17.57 5.56 -463.06 -2.57 -20.14 16 14 C 0.53 19.69 7.85 87.66 0.69 20.38 16 15 O -0.57 -26.82 15.86 -3.03 -0.05 -26.87 16 16 C -0.13 -5.10 6.16 71.23 0.44 -4.66 16 17 S -0.15 -8.66 20.57 -56.49 -1.16 -9.82 16 18 C -0.55 -31.28 9.50 67.95 0.65 -30.63 16 19 H 0.08 4.41 7.80 -2.91 -0.02 4.39 16 20 C 0.01 0.67 5.49 84.86 0.47 1.14 16 21 N -0.91 -56.33 13.22 21.65 0.29 -56.05 16 22 Si 1.00 43.57 29.55 68.60 2.03 45.59 16 23 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 24 H -0.28 -11.89 7.11 99.48 0.71 -11.19 16 25 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 26 C 0.04 0.63 4.22 86.65 0.37 0.99 16 27 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 30 H 0.05 0.89 7.18 -2.39 -0.02 0.87 16 31 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.03 0.48 7.97 -2.38 -0.02 0.46 16 33 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.05 0.55 7.67 -2.39 -0.02 0.53 16 35 H 0.08 1.00 7.69 -2.39 -0.02 0.98 16 36 H 0.05 0.63 8.14 -2.38 -0.02 0.61 16 37 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 38 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 39 H 0.08 0.93 8.00 -2.39 -0.02 0.91 16 40 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 42 H 0.05 1.32 7.67 -2.39 -0.02 1.31 16 43 H 0.42 7.10 8.47 -92.71 -0.79 6.32 16 44 H 0.11 3.89 8.14 -2.39 -0.02 3.87 16 45 H 0.11 3.91 8.14 -2.40 -0.02 3.89 16 46 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 47 H 0.07 1.35 7.75 -2.39 -0.02 1.33 16 48 H 0.05 0.75 7.83 -2.39 -0.02 0.73 16 Total: -1.00 -75.53 396.04 -0.41 -75.93 By element: Atomic # 1 Polarization: 18.95 SS G_CDS: 0.12 Total: 19.07 kcal Atomic # 6 Polarization: -20.18 SS G_CDS: 5.67 Total: -14.52 kcal Atomic # 7 Polarization: -82.38 SS G_CDS: -7.01 Total: -89.40 kcal Atomic # 8 Polarization: -26.82 SS G_CDS: -0.05 Total: -26.87 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.59 kcal Atomic # 16 Polarization: -8.66 SS G_CDS: -1.16 Total: -9.82 kcal Total: -75.53 -0.41 -75.93 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102676183.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.124 kcal (2) G-P(sol) polarization free energy of solvation -75.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds