Wall clock time and date at job start Tue Mar 31 2020 10:34:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.46592 * 2 1 4 4 H 1.09000 * 109.46981 * 304.99752 * 3 2 1 5 5 S 1.81393 * 109.47558 * 65.00118 * 3 2 1 6 6 C 1.81394 * 103.00224 * 184.99708 * 5 3 2 7 7 C 1.50699 * 109.46745 * 185.00335 * 3 2 1 8 8 O 1.21288 * 119.99980 * 329.99323 * 7 3 2 9 9 N 1.34781 * 120.00343 * 150.00015 * 7 3 2 10 10 C 1.48113 * 127.02791 * 359.68155 * 9 7 3 11 11 C 1.54942 * 103.25098 * 219.55349 * 10 9 7 12 12 H 1.09004 * 110.74642 * 80.96295 * 11 10 9 13 13 C 1.53007 * 110.89505 * 204.21424 * 11 10 9 14 14 C 1.54620 * 102.84217 * 322.62061 * 11 10 9 15 15 H 1.08993 * 110.33147 * 262.95994 * 14 11 10 16 16 C 1.53001 * 110.41495 * 140.78109 * 14 11 10 17 17 C 1.53000 * 109.47158 * 177.87901 * 16 14 11 18 18 N 1.46498 * 109.46832 * 180.02562 * 17 16 14 19 19 C 1.36936 * 119.99782 * 180.02562 * 18 17 16 20 20 H 1.08000 * 119.99945 * 359.97438 * 19 18 17 21 21 C 1.38813 * 120.00185 * 180.02562 * 19 18 17 22 22 N 1.31617 * 120.00278 * 179.97438 * 21 19 18 23 23 Si 1.86805 * 119.99807 * 359.97438 * 21 19 18 24 24 H 1.48500 * 109.47309 * 90.00030 * 23 21 19 25 25 H 1.48505 * 109.46913 * 210.00036 * 23 21 19 26 26 H 1.48502 * 109.47018 * 329.99694 * 23 21 19 27 27 C 1.47486 * 127.03579 * 179.97438 * 9 7 3 28 28 H 1.09003 * 109.47340 * 60.00012 * 1 2 3 29 29 H 1.09000 * 109.46831 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47132 * 299.99795 * 1 2 3 31 31 H 1.09001 * 109.47132 * 240.00205 * 2 1 3 32 32 H 1.08993 * 109.46896 * 119.99704 * 2 1 3 33 33 H 1.08999 * 109.47158 * 180.02562 * 6 5 3 34 34 H 1.09000 * 109.47088 * 299.99906 * 6 5 3 35 35 H 1.08999 * 109.47509 * 60.00155 * 6 5 3 36 36 H 1.08997 * 110.66402 * 337.99428 * 10 9 7 37 37 H 1.08998 * 110.66769 * 101.11840 * 10 9 7 38 38 H 1.09006 * 109.46934 * 173.50860 * 13 11 10 39 39 H 1.08998 * 109.47022 * 293.50373 * 13 11 10 40 40 H 1.08993 * 109.46865 * 53.51344 * 13 11 10 41 41 H 1.08998 * 109.47318 * 297.88211 * 16 14 11 42 42 H 1.09010 * 109.46802 * 57.87813 * 16 14 11 43 43 H 1.09004 * 109.46901 * 300.00109 * 17 16 14 44 44 H 1.08997 * 109.47208 * 60.00468 * 17 16 14 45 45 H 0.96998 * 120.00470 * 0.02562 * 18 17 16 46 46 H 0.97006 * 120.00263 * 179.97438 * 22 21 19 47 47 H 1.08999 * 109.91088 * 273.65318 * 27 9 7 48 48 H 1.08998 * 109.91112 * 34.92867 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 16 1.5601 2.2536 1.5499 6 6 2.1076 3.9650 1.3016 7 6 3.5418 1.4444 -0.1239 8 8 4.1883 0.5206 0.3231 9 7 4.1667 2.4726 -0.7313 10 6 3.5355 3.6691 -1.3345 11 6 4.3691 3.9004 -2.6200 12 1 4.0369 3.2385 -3.4199 13 6 4.2938 5.3629 -3.0634 14 6 5.8031 3.5380 -2.1695 15 1 6.3540 4.4387 -1.8989 16 6 6.5358 2.7811 -3.2791 17 6 7.9676 2.4800 -2.8316 18 7 8.6692 1.7558 -3.8943 19 6 9.9733 1.3766 -3.7187 20 1 10.4846 1.6118 -2.7969 21 6 10.6384 0.6909 -4.7259 22 7 11.8919 0.3269 -4.5573 23 14 9.7542 0.2848 -6.3205 24 1 9.9466 1.3935 -7.2895 25 1 10.3087 -0.9705 -6.8881 26 1 8.3044 0.1083 -6.0516 27 6 5.6183 2.6336 -0.9366 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.8671 4.5554 2.1857 34 1 3.1849 3.9814 1.1362 35 1 1.6004 4.3865 0.4337 36 1 2.4930 3.4701 -1.5827 37 1 3.6160 4.5253 -0.6648 38 1 4.9763 5.5252 -3.8976 39 1 3.2760 5.5958 -3.3761 40 1 4.5756 6.0094 -2.2324 41 1 6.0155 1.8459 -3.4858 42 1 6.5581 3.3917 -4.1819 43 1 8.4879 3.4153 -2.6249 44 1 7.9453 1.8695 -1.9290 45 1 8.2102 1.5449 -4.7224 46 1 12.3566 -0.1527 -5.2610 47 1 6.0673 3.1027 -0.0611 48 1 6.0777 1.6617 -1.1169 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001104076706.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:34:12 Heat of formation + Delta-G solvation = -34.270645 kcal Electronic energy + Delta-G solvation = -24878.654101 eV Core-core repulsion = 21480.722386 eV Total energy + Delta-G solvation = -3397.931715 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.177 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.52152 -38.39591 -35.37585 -34.81821 -33.40832 -32.18679 -30.79153 -29.60182 -28.64359 -26.95527 -26.58160 -24.38733 -22.41363 -22.12549 -20.89419 -20.13851 -19.59583 -17.61926 -17.42661 -17.20726 -16.31913 -15.80635 -15.40464 -14.76431 -14.59274 -14.47970 -14.16890 -13.94645 -13.85912 -13.62046 -13.37882 -13.30146 -13.07268 -12.78877 -12.63501 -12.52295 -12.35478 -12.15023 -11.93931 -11.62910 -11.55877 -11.43550 -11.35839 -11.28635 -10.92857 -10.69856 -10.55052 -10.50159 -10.30824 -10.08862 -10.00195 -9.57589 -8.91462 -8.87588 -8.06812 -7.21812 -5.75335 -3.10856 1.00789 1.90566 2.56892 2.79081 3.37897 3.40276 3.45604 3.96198 4.17536 4.23684 4.41215 4.52561 4.60232 4.63655 4.69271 4.72937 4.91891 4.95226 5.05033 5.05558 5.10372 5.18606 5.29881 5.33383 5.36746 5.39801 5.52745 5.56497 5.60168 5.66056 5.74728 5.78622 5.81092 5.86855 5.88454 5.97629 5.99016 6.05000 6.14119 6.30262 6.72275 6.76628 7.25700 7.90993 8.01107 8.43750 9.22836 9.95205 10.14896 11.43230 Molecular weight = 314.18amu Principal moments of inertia in cm(-1) A = 0.017515 B = 0.003006 C = 0.002815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.271509 B = 9313.897184 C = 9943.508741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.094 4.094 3 C -0.077 4.077 4 H 0.105 0.895 5 S -0.206 6.206 6 C -0.140 4.140 7 C 0.533 3.467 8 O -0.517 6.517 9 N -0.620 5.620 10 C 0.094 3.906 11 C -0.102 4.102 12 H 0.085 0.915 13 C -0.141 4.141 14 C -0.091 4.091 15 H 0.089 0.911 16 C -0.121 4.121 17 C 0.155 3.845 18 N -0.757 5.757 19 C -0.244 4.244 20 H 0.090 0.910 21 C 0.003 3.997 22 N -0.935 5.935 23 Si 0.885 3.115 24 H -0.284 1.284 25 H -0.290 1.290 26 H -0.278 1.278 27 C 0.107 3.893 28 H 0.055 0.945 29 H 0.061 0.939 30 H 0.067 0.933 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.104 0.896 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.065 0.935 39 H 0.056 0.944 40 H 0.058 0.942 41 H 0.062 0.938 42 H 0.066 0.934 43 H 0.027 0.973 44 H 0.027 0.973 45 H 0.360 0.640 46 H 0.259 0.741 47 H 0.068 0.932 48 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.408 10.683 8.462 30.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.132 4.132 3 C -0.208 4.208 4 H 0.123 0.877 5 S 0.020 5.980 6 C -0.308 4.308 7 C 0.318 3.682 8 O -0.392 6.392 9 N -0.355 5.355 10 C -0.029 4.029 11 C -0.122 4.122 12 H 0.103 0.897 13 C -0.199 4.199 14 C -0.110 4.110 15 H 0.108 0.892 16 C -0.159 4.159 17 C 0.028 3.972 18 N -0.403 5.403 19 C -0.374 4.374 20 H 0.108 0.892 21 C -0.192 4.192 22 N -0.583 5.583 23 Si 0.716 3.284 24 H -0.211 1.211 25 H -0.217 1.217 26 H -0.204 1.204 27 C -0.015 4.015 28 H 0.074 0.926 29 H 0.080 0.920 30 H 0.086 0.914 31 H 0.099 0.901 32 H 0.103 0.897 33 H 0.123 0.877 34 H 0.102 0.898 35 H 0.099 0.901 36 H 0.094 0.906 37 H 0.096 0.904 38 H 0.084 0.916 39 H 0.075 0.925 40 H 0.077 0.923 41 H 0.081 0.919 42 H 0.085 0.915 43 H 0.045 0.955 44 H 0.045 0.955 45 H 0.193 0.807 46 H 0.069 0.931 47 H 0.086 0.914 48 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -27.386 9.628 9.777 30.632 hybrid contribution 0.176 0.328 -2.306 2.335 sum -27.211 9.956 7.471 29.923 Atomic orbital electron populations 1.21847 0.94334 1.02301 1.02578 1.21227 0.96435 0.91102 1.04479 1.23450 0.95056 1.02810 0.99519 0.87735 1.87006 1.78738 1.07851 1.24424 1.23751 1.04907 0.95798 1.06372 1.19991 0.89068 0.81215 0.77878 1.90757 1.66786 1.34488 1.47167 1.48834 1.08662 1.20547 1.57474 1.22892 0.97390 0.87975 0.94598 1.22367 0.95095 0.98066 0.96648 0.89664 1.21743 1.01985 0.94274 1.01895 1.22147 0.95294 0.98753 0.94849 0.89236 1.21846 0.96882 0.99805 0.97372 1.20681 0.89384 0.95159 0.91978 1.42709 1.12136 1.69046 1.16363 1.19076 0.86299 1.29694 1.02316 0.89224 1.24682 0.95887 1.00552 0.98126 1.69704 1.09894 1.44697 1.33992 0.86528 0.79130 0.77880 0.84881 1.21092 1.21687 1.20399 1.22278 0.80043 1.01729 0.97476 0.92602 0.91982 0.91429 0.90137 0.89749 0.87707 0.89847 0.90104 0.90609 0.90358 0.91621 0.92520 0.92286 0.91904 0.91506 0.95547 0.95493 0.80748 0.93062 0.91385 0.89314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.74 37.16 0.36 -0.74 16 2 C -0.09 -0.89 4.91 -26.73 -0.13 -1.02 16 3 C -0.08 -0.74 2.26 -27.88 -0.06 -0.80 16 4 H 0.10 0.79 6.45 -51.92 -0.33 0.45 16 5 S -0.21 -1.90 20.59 -107.50 -2.21 -4.11 16 6 C -0.14 -0.89 8.92 101.05 0.90 0.01 16 7 C 0.53 6.88 6.61 -10.98 -0.07 6.80 16 8 O -0.52 -8.97 16.61 5.55 0.09 -8.88 16 9 N -0.62 -6.86 2.91 -169.75 -0.49 -7.35 16 10 C 0.09 0.70 4.36 -2.13 -0.01 0.69 16 11 C -0.10 -0.84 3.20 -88.74 -0.28 -1.13 16 12 H 0.08 0.76 7.87 -51.93 -0.41 0.36 16 13 C -0.14 -0.92 9.17 37.16 0.34 -0.58 16 14 C -0.09 -0.98 2.61 -89.23 -0.23 -1.22 16 15 H 0.09 0.90 7.85 -51.93 -0.41 0.49 16 16 C -0.12 -1.73 4.53 -26.73 -0.12 -1.85 16 17 C 0.16 2.97 6.08 -4.04 -0.02 2.94 16 18 N -0.76 -18.41 5.41 -59.91 -0.32 -18.73 16 19 C -0.24 -7.10 10.47 -15.06 -0.16 -7.26 16 20 H 0.09 2.79 8.06 -52.49 -0.42 2.36 16 21 C 0.00 0.09 5.50 -17.43 -0.10 0.00 16 22 N -0.93 -29.96 13.97 55.49 0.78 -29.18 16 23 Si 0.89 22.49 27.74 -169.99 -4.71 17.78 16 24 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 25 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 26 H -0.28 -6.66 6.52 56.52 0.37 -6.29 16 27 C 0.11 1.32 6.15 -2.97 -0.02 1.30 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.50 7.13 -51.93 -0.37 0.13 16 31 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.08 0.94 8.02 -51.93 -0.42 0.52 16 33 H 0.10 0.55 8.14 -51.92 -0.42 0.13 16 34 H 0.08 0.61 5.99 -51.92 -0.31 0.30 16 35 H 0.08 0.38 7.69 -51.92 -0.40 -0.02 16 36 H 0.08 0.45 6.43 -51.93 -0.33 0.11 16 37 H 0.08 0.47 6.38 -51.93 -0.33 0.14 16 38 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 40 H 0.06 0.35 8.11 -51.93 -0.42 -0.07 16 41 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 42 H 0.07 0.92 8.14 -51.92 -0.42 0.50 16 43 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 44 H 0.03 0.54 6.88 -51.93 -0.36 0.18 16 45 H 0.36 8.50 5.53 -40.82 -0.23 8.28 16 46 H 0.26 7.88 8.31 -40.82 -0.34 7.55 16 47 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 48 H 0.09 1.38 6.64 -51.93 -0.34 1.03 16 LS Contribution 381.24 15.07 5.75 5.75 Total: -1.00 -34.77 381.24 -9.22 -43.99 By element: Atomic # 1 Polarization: 12.06 SS G_CDS: -8.48 Total: 3.58 kcal Atomic # 6 Polarization: -3.24 SS G_CDS: 0.39 Total: -2.84 kcal Atomic # 7 Polarization: -55.22 SS G_CDS: -0.04 Total: -55.27 kcal Atomic # 8 Polarization: -8.97 SS G_CDS: 0.09 Total: -8.88 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -4.71 Total: 17.78 kcal Atomic # 16 Polarization: -1.90 SS G_CDS: -2.21 Total: -4.11 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -34.77 -9.22 -43.99 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104076706.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.721 kcal (2) G-P(sol) polarization free energy of solvation -34.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds