Wall clock time and date at job start Tue Mar 31 2020 10:37:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47242 * 2 1 4 4 H 1.08995 * 109.46655 * 305.95324 * 3 2 1 5 5 S 1.81391 * 109.47048 * 65.95477 * 3 2 1 6 6 C 1.81400 * 102.99931 * 187.32928 * 5 3 2 7 7 C 1.50695 * 109.46734 * 185.95438 * 3 2 1 8 8 O 1.21283 * 120.00060 * 264.99628 * 7 3 2 9 9 N 1.34777 * 120.00125 * 85.00350 * 7 3 2 10 10 C 1.46507 * 120.00096 * 179.97438 * 9 7 3 11 11 C 1.52999 * 109.47226 * 175.80593 * 10 9 7 12 12 N 1.46505 * 109.47057 * 54.76782 * 11 10 9 13 13 C 1.36939 * 119.99895 * 63.49373 * 12 11 10 14 14 H 1.07994 * 120.00151 * 354.48696 * 13 12 11 15 15 C 1.38817 * 119.99448 * 174.20645 * 13 12 11 16 16 N 1.31613 * 120.00163 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99380 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47513 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.47386 * 120.00324 * 17 15 13 20 20 H 1.48505 * 109.47160 * 240.00139 * 17 15 13 21 21 C 1.52992 * 109.47169 * 174.76639 * 11 10 9 22 22 C 1.52999 * 109.47169 * 179.97438 * 21 11 10 23 23 C 1.52996 * 109.47452 * 300.00020 * 22 21 11 24 24 C 1.53004 * 109.46718 * 60.00036 * 23 22 21 25 25 C 1.52994 * 109.47149 * 294.76881 * 11 10 9 26 26 H 1.09001 * 109.47131 * 304.00584 * 1 2 3 27 27 H 1.09004 * 109.46669 * 64.00603 * 1 2 3 28 28 H 1.08997 * 109.47227 * 184.00415 * 1 2 3 29 29 H 1.08999 * 109.47191 * 239.99220 * 2 1 3 30 30 H 1.09005 * 109.46917 * 120.00189 * 2 1 3 31 31 H 1.09000 * 109.46885 * 304.74985 * 6 5 3 32 32 H 1.08991 * 109.47430 * 64.75258 * 6 5 3 33 33 H 1.09004 * 109.47561 * 184.75665 * 6 5 3 34 34 H 0.97003 * 119.99810 * 359.97438 * 9 7 3 35 35 H 1.08995 * 109.47285 * 55.80237 * 10 9 7 36 36 H 1.09007 * 109.46713 * 295.80346 * 10 9 7 37 37 H 0.96997 * 119.99863 * 243.50284 * 12 11 10 38 38 H 0.97006 * 119.99927 * 179.97438 * 16 15 13 39 39 H 1.08999 * 109.47480 * 300.00108 * 21 11 10 40 40 H 1.08994 * 109.47328 * 60.00221 * 21 11 10 41 41 H 1.08997 * 109.47377 * 179.97438 * 22 21 11 42 42 H 1.09005 * 109.47255 * 60.00481 * 22 21 11 43 43 H 1.08993 * 109.46943 * 300.00309 * 23 22 21 44 44 H 1.09002 * 109.47559 * 179.97438 * 23 22 21 45 45 H 1.08999 * 109.47023 * 180.02562 * 24 23 22 46 46 H 1.08994 * 109.47600 * 60.00082 * 24 23 22 47 47 H 1.08997 * 109.47480 * 299.99657 * 25 11 10 48 48 H 1.09001 * 109.47209 * 60.00073 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5923 1.9861 -0.8319 5 16 1.5846 2.2448 1.5618 6 6 2.0635 3.9729 1.2876 7 6 3.5398 1.4449 -0.1474 8 8 4.2458 1.5013 0.8371 9 7 4.0966 1.3846 -1.3733 10 6 5.5546 1.3875 -1.5166 11 6 5.9225 1.2072 -2.9907 12 7 5.2505 2.2341 -3.7909 13 6 5.5482 3.5566 -3.5973 14 1 6.2105 3.8494 -2.7961 15 6 5.0032 4.5204 -4.4346 16 7 4.2001 4.1631 -5.4142 17 14 5.4099 6.3244 -4.1710 18 1 6.3287 6.4606 -3.0124 19 1 6.0651 6.8673 -5.3881 20 1 4.1596 7.0797 -3.9032 21 6 7.4374 1.3405 -3.1582 22 6 7.8054 1.1596 -4.6322 23 6 7.3604 -0.2266 -5.1026 24 6 5.8454 -0.3598 -4.9351 25 6 5.4774 -0.1787 -3.4616 26 1 -0.3633 0.5748 0.8519 27 1 -0.3633 0.4504 -0.9238 28 1 -0.3633 -1.0251 0.0718 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 3.1148 4.0178 1.0031 32 1 1.4530 4.3970 0.4906 33 1 1.9107 4.5422 2.2045 34 1 3.5319 1.3393 -2.1607 35 1 5.9786 0.5700 -0.9336 36 1 5.9532 2.3359 -1.1560 37 1 4.5946 1.9771 -4.4577 38 1 3.8190 4.8367 -5.9990 39 1 7.7546 2.3279 -2.8227 40 1 7.9374 0.5766 -2.5629 41 1 8.8846 1.2550 -4.7516 42 1 7.3055 1.9234 -5.2280 43 1 7.8604 -0.9902 -4.5069 44 1 7.6222 -0.3553 -6.1529 45 1 5.5284 -1.3475 -5.2698 46 1 5.3454 0.4038 -5.5307 47 1 5.9773 -0.9427 -2.8664 48 1 4.3981 -0.2736 -3.3423 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001115484755.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:37:01 Heat of formation + Delta-G solvation = -67.125753 kcal Electronic energy + Delta-G solvation = -25926.313460 eV Core-core repulsion = 22526.957041 eV Total energy + Delta-G solvation = -3399.356419 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.177 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.05643 -39.86518 -35.88579 -35.67494 -35.02564 -32.78961 -31.56297 -30.50675 -29.98036 -28.89030 -26.33863 -25.71263 -23.51806 -23.01815 -21.87055 -21.35324 -19.82753 -19.06179 -18.29537 -17.77857 -16.82245 -16.53098 -16.20494 -15.98822 -15.83893 -15.59416 -15.30476 -14.99143 -14.80645 -14.52916 -14.36552 -14.28264 -13.83366 -13.46159 -13.41379 -13.28248 -13.09364 -12.97278 -12.90754 -12.83081 -12.60591 -12.50697 -12.14722 -12.04716 -11.99410 -11.88637 -11.68570 -11.32764 -11.10069 -11.08750 -10.91047 -10.71077 -10.65414 -9.93287 -8.91971 -8.63146 -7.89309 -5.13279 0.55041 1.36409 1.41064 1.46050 1.50931 1.71203 2.31405 2.56847 3.43595 3.67063 3.73342 3.81319 3.92412 3.97984 4.02196 4.13676 4.19952 4.24213 4.36947 4.39134 4.47114 4.49624 4.66800 4.74803 4.76405 4.78410 4.80830 4.81576 4.90513 4.96005 5.06415 5.07285 5.15311 5.18003 5.22093 5.42422 5.44431 5.49112 5.50957 5.56486 5.60604 5.67959 5.80838 6.33837 6.59866 7.24430 7.42987 8.15608 8.42144 9.33050 Molecular weight = 314.18amu Principal moments of inertia in cm(-1) A = 0.010869 B = 0.005171 C = 0.004069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2575.540325 B = 5413.396284 C = 6880.061414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.091 4.091 3 C -0.079 4.079 4 H 0.113 0.887 5 S -0.218 6.218 6 C -0.126 4.126 7 C 0.504 3.496 8 O -0.569 6.569 9 N -0.691 5.691 10 C 0.124 3.876 11 C 0.190 3.810 12 N -0.708 5.708 13 C -0.204 4.204 14 H 0.060 0.940 15 C -0.061 4.061 16 N -0.958 5.958 17 Si 0.942 3.058 18 H -0.279 1.279 19 H -0.299 1.299 20 H -0.299 1.299 21 C -0.114 4.114 22 C -0.106 4.106 23 C -0.108 4.108 24 C -0.112 4.112 25 C -0.107 4.107 26 H 0.061 0.939 27 H 0.063 0.937 28 H 0.075 0.925 29 H 0.092 0.908 30 H 0.068 0.932 31 H 0.055 0.945 32 H 0.086 0.914 33 H 0.118 0.882 34 H 0.407 0.593 35 H 0.066 0.934 36 H 0.030 0.970 37 H 0.378 0.622 38 H 0.246 0.754 39 H 0.037 0.963 40 H 0.071 0.929 41 H 0.055 0.945 42 H 0.041 0.959 43 H 0.073 0.927 44 H 0.058 0.942 45 H 0.075 0.925 46 H 0.043 0.957 47 H 0.082 0.918 48 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.599 -11.312 6.333 13.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.130 4.130 3 C -0.211 4.211 4 H 0.131 0.869 5 S 0.009 5.991 6 C -0.294 4.294 7 C 0.287 3.713 8 O -0.449 6.449 9 N -0.341 5.341 10 C -0.003 4.003 11 C 0.099 3.901 12 N -0.348 5.348 13 C -0.336 4.336 14 H 0.078 0.922 15 C -0.254 4.254 16 N -0.609 5.609 17 Si 0.774 3.226 18 H -0.204 1.204 19 H -0.227 1.227 20 H -0.227 1.227 21 C -0.153 4.153 22 C -0.144 4.144 23 C -0.145 4.145 24 C -0.150 4.150 25 C -0.145 4.145 26 H 0.080 0.920 27 H 0.082 0.918 28 H 0.094 0.906 29 H 0.110 0.890 30 H 0.086 0.914 31 H 0.074 0.926 32 H 0.105 0.895 33 H 0.137 0.863 34 H 0.243 0.757 35 H 0.084 0.916 36 H 0.048 0.952 37 H 0.212 0.788 38 H 0.055 0.945 39 H 0.056 0.944 40 H 0.090 0.910 41 H 0.074 0.926 42 H 0.060 0.940 43 H 0.092 0.908 44 H 0.077 0.923 45 H 0.093 0.907 46 H 0.062 0.938 47 H 0.100 0.900 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -3.468 -11.543 7.989 14.460 hybrid contribution 0.525 2.363 -1.721 2.970 sum -2.943 -9.180 6.268 11.498 Atomic orbital electron populations 1.21820 0.92728 1.03134 1.02907 1.21290 0.98329 0.89722 1.03670 1.23616 0.93964 1.03629 0.99859 0.86891 1.86380 1.80399 1.07848 1.24457 1.23463 1.03664 0.95157 1.07145 1.20843 0.90902 0.76215 0.83293 1.90685 1.64095 1.51339 1.38782 1.45741 1.08183 1.72507 1.07686 1.21745 0.80054 0.99624 0.98885 1.20019 0.92314 0.89651 0.88109 1.42467 1.47632 1.01029 1.43702 1.19196 1.21265 0.84493 1.08684 0.92203 1.25114 1.01769 0.99972 0.98547 1.69745 1.37591 1.32459 1.21121 0.85534 0.76826 0.83485 0.76707 1.20418 1.22655 1.22725 1.21769 0.96115 1.00347 0.97093 1.21297 0.99350 0.97724 0.95992 1.21447 0.95878 0.96429 1.00746 1.21427 0.96331 1.01194 0.96033 1.21647 1.01036 0.94925 0.96862 0.91973 0.91755 0.90590 0.89003 0.91358 0.92573 0.89524 0.86330 0.75665 0.91619 0.95188 0.78850 0.94462 0.94418 0.91016 0.92587 0.94043 0.90819 0.92309 0.90665 0.93772 0.89953 0.91803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.55 9.81 71.98 0.71 -1.85 16 2 C -0.09 -1.92 5.37 30.60 0.16 -1.76 16 3 C -0.08 -2.10 2.60 29.85 0.08 -2.02 16 4 H 0.11 2.86 8.14 -2.39 -0.02 2.84 16 5 S -0.22 -6.04 19.88 -56.49 -1.12 -7.16 16 6 C -0.13 -3.34 10.61 113.37 1.20 -2.14 16 7 C 0.50 16.75 6.62 87.66 0.58 17.33 16 8 O -0.57 -22.92 16.14 -3.04 -0.05 -22.97 16 9 N -0.69 -22.37 5.09 -463.05 -2.36 -24.72 16 10 C 0.12 4.26 4.38 86.38 0.38 4.64 16 11 C 0.19 6.30 0.41 3.60 0.00 6.30 16 12 N -0.71 -29.63 3.39 -303.36 -1.03 -30.66 16 13 C -0.20 -10.12 8.71 84.03 0.73 -9.39 16 14 H 0.06 3.07 6.77 -2.91 -0.02 3.05 16 15 C -0.06 -3.26 5.50 84.86 0.47 -2.80 16 16 N -0.96 -53.84 13.07 21.65 0.28 -53.55 16 17 Si 0.94 45.02 29.55 68.60 2.03 47.05 16 18 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 19 H -0.30 -14.49 7.11 99.48 0.71 -13.78 16 20 H -0.30 -14.48 7.11 99.48 0.71 -13.78 16 21 C -0.11 -3.71 4.51 30.59 0.14 -3.57 16 22 C -0.11 -3.39 5.76 30.59 0.18 -3.21 16 23 C -0.11 -2.79 5.92 30.59 0.18 -2.61 16 24 C -0.11 -3.00 5.75 30.58 0.18 -2.83 16 25 C -0.11 -2.84 4.64 30.58 0.14 -2.70 16 26 H 0.06 1.17 7.05 -2.39 -0.02 1.15 16 27 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.09 1.70 8.14 -2.39 -0.02 1.69 16 30 H 0.07 1.56 8.14 -2.38 -0.02 1.54 16 31 H 0.06 1.78 7.96 -2.39 -0.02 1.76 16 32 H 0.09 2.11 8.14 -2.40 -0.02 2.09 16 33 H 0.12 2.62 8.14 -2.39 -0.02 2.60 16 34 H 0.41 12.65 7.40 -92.71 -0.69 11.96 16 35 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 36 H 0.03 1.23 7.54 -2.38 -0.02 1.21 16 37 H 0.38 17.10 6.66 -92.71 -0.62 16.48 16 38 H 0.25 13.78 8.31 -92.70 -0.77 13.01 16 39 H 0.04 1.41 7.19 -2.39 -0.02 1.39 16 40 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 41 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 42 H 0.04 1.68 7.60 -2.38 -0.02 1.66 16 43 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 44 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 45 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 46 H 0.04 1.47 6.94 -2.39 -0.02 1.45 16 47 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 48 H 0.06 1.63 7.29 -2.39 -0.02 1.61 16 Total: -1.00 -61.30 383.73 2.51 -58.79 By element: Atomic # 1 Polarization: 40.18 SS G_CDS: -0.37 Total: 39.81 kcal Atomic # 6 Polarization: -11.71 SS G_CDS: 5.12 Total: -6.59 kcal Atomic # 7 Polarization: -105.83 SS G_CDS: -3.10 Total: -108.93 kcal Atomic # 8 Polarization: -22.92 SS G_CDS: -0.05 Total: -22.97 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Atomic # 16 Polarization: -6.04 SS G_CDS: -1.12 Total: -7.16 kcal Total: -61.30 2.51 -58.79 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115484755.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.339 kcal (2) G-P(sol) polarization free energy of solvation -61.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds