Wall clock time and date at job start Tue Mar 31 2020 10:37:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.47016 * 2 1 4 4 H 1.09001 * 109.46826 * 306.25636 * 3 2 1 5 5 S 1.81396 * 109.46932 * 186.26494 * 3 2 1 6 6 C 1.81399 * 103.00478 * 67.41062 * 5 3 2 7 7 C 1.50695 * 109.47342 * 66.25903 * 3 2 1 8 8 O 1.21278 * 119.99714 * 100.00085 * 7 3 2 9 9 N 1.34772 * 120.00038 * 280.00166 * 7 3 2 10 10 C 1.46501 * 119.99997 * 180.02562 * 9 7 3 11 11 C 1.52999 * 109.47526 * 177.78304 * 10 9 7 12 12 N 1.46501 * 109.46994 * 54.44646 * 11 10 9 13 13 C 1.36941 * 119.99759 * 62.22032 * 12 11 10 14 14 H 1.08008 * 119.99501 * 354.31145 * 13 12 11 15 15 C 1.38805 * 119.99995 * 174.31547 * 13 12 11 16 16 N 1.31615 * 120.00305 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 120.00023 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47296 * 89.99368 * 17 15 13 19 19 H 1.48500 * 109.47192 * 210.00005 * 17 15 13 20 20 H 1.48499 * 109.47202 * 329.99852 * 17 15 13 21 21 C 1.52998 * 109.47267 * 174.45292 * 11 10 9 22 22 C 1.53006 * 109.46987 * 179.97438 * 21 11 10 23 23 C 1.52998 * 109.47004 * 299.99768 * 22 21 11 24 24 C 1.53007 * 109.46954 * 60.00120 * 23 22 21 25 25 C 1.52998 * 109.46851 * 294.45137 * 11 10 9 26 26 H 1.09001 * 109.47415 * 293.64900 * 1 2 3 27 27 H 1.08997 * 109.47226 * 53.64800 * 1 2 3 28 28 H 1.09005 * 109.47274 * 173.64815 * 1 2 3 29 29 H 1.09004 * 109.46977 * 239.99821 * 2 1 3 30 30 H 1.09005 * 109.47077 * 119.99675 * 2 1 3 31 31 H 1.09002 * 109.47216 * 63.46964 * 6 5 3 32 32 H 1.08999 * 109.47437 * 183.47179 * 6 5 3 33 33 H 1.09004 * 109.47170 * 303.47157 * 6 5 3 34 34 H 0.96997 * 120.00095 * 359.97438 * 9 7 3 35 35 H 1.09000 * 109.47401 * 57.78110 * 10 9 7 36 36 H 1.09004 * 109.47017 * 297.78516 * 10 9 7 37 37 H 0.96998 * 120.00107 * 242.49105 * 12 11 10 38 38 H 0.97000 * 120.00574 * 179.97438 * 16 15 13 39 39 H 1.09001 * 109.46787 * 299.99337 * 21 11 10 40 40 H 1.08999 * 109.47015 * 59.99959 * 21 11 10 41 41 H 1.08994 * 109.47178 * 179.97438 * 22 21 11 42 42 H 1.09000 * 109.46829 * 59.99819 * 22 21 11 43 43 H 1.08999 * 109.47404 * 300.00273 * 23 22 21 44 44 H 1.08996 * 109.46958 * 179.97438 * 23 22 21 45 45 H 1.09007 * 109.46838 * 179.97438 * 24 23 22 46 46 H 1.08999 * 109.46940 * 59.99869 * 24 23 22 47 47 H 1.08999 * 109.47404 * 300.00024 * 25 11 10 48 48 H 1.09008 * 109.47266 * 59.99922 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5880 1.9876 -0.8287 5 16 3.8443 1.4459 -0.1866 6 6 4.0811 0.8276 -1.8754 7 6 1.6681 2.1068 1.3005 8 8 2.4916 2.2125 2.1846 9 7 0.4205 2.5835 1.4812 10 6 0.0592 3.2298 2.7453 11 6 -1.3863 3.7257 2.6698 12 7 -2.2651 2.6140 2.2981 13 6 -2.3723 1.5224 3.1180 14 1 -1.7416 1.4386 3.9908 15 6 -3.2914 0.5237 2.8272 16 7 -4.0602 0.6260 1.7638 17 14 -3.4382 -0.9651 3.9460 18 1 -4.4435 -0.6919 5.0042 19 1 -3.8658 -2.1429 3.1491 20 1 -2.1218 -1.2440 4.5741 21 6 -1.8086 4.2759 4.0335 22 6 -3.2539 4.7723 3.9578 23 6 -3.3585 5.8792 2.9066 24 6 -2.9361 5.3289 1.5429 25 6 -1.4914 4.8323 1.6186 26 1 -0.3634 0.4122 0.9413 27 1 -0.3633 0.6091 -0.8276 28 1 -0.3634 -1.0214 -0.1137 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8901 31 1 3.6391 1.5279 -2.5842 32 1 5.1472 0.7281 -2.0798 33 1 3.5994 -0.1449 -1.9772 34 1 -0.2380 2.4993 0.7740 35 1 0.7242 4.0746 2.9246 36 1 0.1552 2.5126 3.5605 37 1 -2.7679 2.6494 1.4694 38 1 -4.7022 -0.0721 1.5604 39 1 -1.7337 3.4874 4.7824 40 1 -1.1547 5.1030 4.3099 41 1 -3.5550 5.1639 4.9294 42 1 -3.9080 3.9455 3.6811 43 1 -2.7043 6.7060 3.1833 44 1 -4.3882 6.2325 2.8524 45 1 -3.0110 6.1174 0.7939 46 1 -3.5902 4.5021 1.2662 47 1 -0.8376 5.6594 1.8950 48 1 -1.1905 4.4403 0.6469 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001115484756.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:37:06 Heat of formation + Delta-G solvation = -48.765236 kcal Electronic energy + Delta-G solvation = -26196.614787 eV Core-core repulsion = 22798.054540 eV Total energy + Delta-G solvation = -3398.560247 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.177 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.70825 -38.47742 -34.70090 -34.34997 -33.21979 -31.09524 -30.25301 -28.98223 -28.65203 -27.76594 -25.20799 -23.80762 -22.27842 -21.91417 -20.44888 -19.95377 -18.36018 -17.31985 -16.96508 -16.45344 -15.31946 -15.24376 -15.01531 -14.41016 -14.09433 -14.01925 -13.92366 -13.62439 -13.61273 -13.50028 -12.95171 -12.82014 -12.69443 -12.60202 -12.05504 -11.91307 -11.71784 -11.58145 -11.49448 -11.22740 -11.03515 -10.91783 -10.80102 -10.76417 -10.55694 -10.19465 -10.05677 -9.84462 -9.79044 -9.65440 -9.45427 -9.31865 -8.90685 -8.44965 -7.63345 -7.03768 -5.83562 -3.12278 1.52962 2.53670 3.00153 3.38781 3.45992 3.47540 3.66605 4.53764 4.82275 4.87990 5.01982 5.04335 5.15302 5.18883 5.24453 5.27295 5.43141 5.54457 5.56571 5.58560 5.62417 5.71741 5.81143 5.85603 5.96462 6.02621 6.10567 6.15261 6.18253 6.19895 6.28241 6.31072 6.43764 6.48559 6.58086 6.75034 6.77606 6.79225 6.80183 6.96514 7.05283 7.18945 7.69341 7.98140 8.34327 8.62622 9.47332 9.99680 10.36812 11.38035 Molecular weight = 314.18amu Principal moments of inertia in cm(-1) A = 0.011705 B = 0.005197 C = 0.004081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2391.609782 B = 5386.937375 C = 6859.079038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.109 4.109 3 C -0.086 4.086 4 H 0.102 0.898 5 S -0.196 6.196 6 C -0.140 4.140 7 C 0.531 3.469 8 O -0.537 6.537 9 N -0.693 5.693 10 C 0.115 3.885 11 C 0.191 3.809 12 N -0.709 5.709 13 C -0.229 4.229 14 H 0.068 0.932 15 C -0.005 4.005 16 N -0.929 5.929 17 Si 0.895 3.105 18 H -0.291 1.291 19 H -0.293 1.293 20 H -0.283 1.283 21 C -0.114 4.114 22 C -0.109 4.109 23 C -0.112 4.112 24 C -0.115 4.115 25 C -0.114 4.114 26 H 0.087 0.913 27 H 0.053 0.947 28 H 0.060 0.940 29 H 0.067 0.933 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.100 0.900 33 H 0.077 0.923 34 H 0.404 0.596 35 H 0.053 0.947 36 H 0.065 0.935 37 H 0.384 0.616 38 H 0.254 0.746 39 H 0.064 0.936 40 H 0.044 0.956 41 H 0.043 0.957 42 H 0.083 0.917 43 H 0.049 0.951 44 H 0.051 0.949 45 H 0.048 0.952 46 H 0.074 0.926 47 H 0.059 0.941 48 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.683 5.524 -6.621 11.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.148 4.148 3 C -0.218 4.218 4 H 0.121 0.879 5 S 0.031 5.969 6 C -0.309 4.309 7 C 0.314 3.686 8 O -0.415 6.415 9 N -0.345 5.345 10 C -0.011 4.011 11 C 0.099 3.901 12 N -0.351 5.351 13 C -0.360 4.360 14 H 0.086 0.914 15 C -0.201 4.201 16 N -0.577 5.577 17 Si 0.727 3.273 18 H -0.219 1.219 19 H -0.220 1.220 20 H -0.209 1.209 21 C -0.154 4.154 22 C -0.147 4.147 23 C -0.150 4.150 24 C -0.153 4.153 25 C -0.152 4.152 26 H 0.105 0.895 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.085 0.915 30 H 0.096 0.904 31 H 0.093 0.907 32 H 0.119 0.881 33 H 0.096 0.904 34 H 0.240 0.760 35 H 0.071 0.929 36 H 0.083 0.917 37 H 0.219 0.781 38 H 0.064 0.936 39 H 0.083 0.917 40 H 0.062 0.938 41 H 0.062 0.938 42 H 0.102 0.898 43 H 0.068 0.932 44 H 0.069 0.931 45 H 0.067 0.933 46 H 0.093 0.907 47 H 0.077 0.923 48 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 9.049 5.796 -5.138 11.911 hybrid contribution -1.618 -1.401 -0.917 2.329 sum 7.431 4.395 -6.056 10.545 Atomic orbital electron populations 1.21992 0.93053 1.02802 1.04256 1.21748 0.97731 0.92143 1.03190 1.23500 0.96317 1.01323 1.00629 0.87935 1.87298 1.05776 1.86733 1.17109 1.23535 1.06017 1.03969 0.97388 1.19481 0.82860 0.78646 0.87617 1.90693 1.49710 1.57402 1.43663 1.45791 1.11357 1.58435 1.18873 1.21909 0.97239 0.96355 0.85594 1.19815 0.88665 0.88254 0.93359 1.42441 1.51378 1.16190 1.25091 1.19051 1.15186 0.96521 1.05218 0.91389 1.24614 0.98608 0.98870 0.98003 1.69635 1.26014 1.34832 1.27259 0.86375 0.77700 0.83088 0.80181 1.21860 1.21981 1.20851 1.21786 0.96106 0.99203 0.98300 1.21369 0.97881 0.98534 0.96888 1.21469 0.99870 0.97852 0.95791 1.21463 0.96898 1.00345 0.96565 1.21681 0.96919 0.97799 0.98760 0.89457 0.92824 0.92108 0.91455 0.90384 0.90722 0.88112 0.90427 0.75955 0.92865 0.91658 0.78072 0.93648 0.91749 0.93758 0.93811 0.89815 0.93250 0.93062 0.93330 0.90722 0.92259 0.92581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.44 8.94 37.16 0.33 -2.11 16 2 C -0.11 -1.48 5.35 -26.73 -0.14 -1.62 16 3 C -0.09 -1.22 2.63 -27.88 -0.07 -1.29 16 4 H 0.10 1.25 8.13 -51.92 -0.42 0.83 16 5 S -0.20 -2.76 21.02 -107.50 -2.26 -5.02 16 6 C -0.14 -1.31 10.55 101.05 1.07 -0.25 16 7 C 0.53 9.28 6.64 -10.99 -0.07 9.21 16 8 O -0.54 -11.29 16.04 5.56 0.09 -11.20 16 9 N -0.69 -11.58 4.05 -60.30 -0.24 -11.83 16 10 C 0.12 2.03 4.35 -4.04 -0.02 2.02 16 11 C 0.19 3.25 0.41 -131.82 -0.05 3.20 16 12 N -0.71 -14.49 3.42 -47.23 -0.16 -14.65 16 13 C -0.23 -5.47 8.70 -15.06 -0.13 -5.60 16 14 H 0.07 1.68 6.78 -52.48 -0.36 1.33 16 15 C 0.00 -0.12 5.50 -17.43 -0.10 -0.22 16 16 N -0.93 -25.04 13.07 55.49 0.73 -24.32 16 17 Si 0.90 21.29 29.55 -169.99 -5.02 16.26 16 18 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 19 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 20 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 21 C -0.11 -1.91 4.53 -26.73 -0.12 -2.04 16 22 C -0.11 -1.80 5.77 -26.73 -0.15 -1.95 16 23 C -0.11 -1.61 5.92 -26.73 -0.16 -1.77 16 24 C -0.12 -1.68 5.75 -26.75 -0.15 -1.83 16 25 C -0.11 -1.67 4.64 -26.76 -0.12 -1.79 16 26 H 0.09 1.61 6.44 -51.93 -0.33 1.27 16 27 H 0.05 0.73 8.13 -51.93 -0.42 0.31 16 28 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.07 0.77 6.76 -51.93 -0.35 0.42 16 30 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.07 0.62 8.14 -51.92 -0.42 0.20 16 32 H 0.10 0.80 8.14 -51.92 -0.42 0.38 16 33 H 0.08 0.67 6.96 -51.92 -0.36 0.31 16 34 H 0.40 6.47 6.23 -40.82 -0.25 6.21 16 35 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.07 1.32 7.48 -51.93 -0.39 0.93 16 37 H 0.38 8.48 6.62 -40.82 -0.27 8.21 16 38 H 0.25 6.84 8.31 -40.82 -0.34 6.50 16 39 H 0.06 1.19 7.27 -51.93 -0.38 0.82 16 40 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 41 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 42 H 0.08 1.67 7.60 -51.93 -0.39 1.27 16 43 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.07 1.27 6.91 -51.93 -0.36 0.91 16 47 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 48 H 0.06 0.80 7.27 -51.92 -0.38 0.42 16 LS Contribution 378.60 15.07 5.71 5.71 Total: -1.00 -27.65 378.60 -9.52 -37.17 By element: Atomic # 1 Polarization: 22.38 SS G_CDS: -8.45 Total: 13.92 kcal Atomic # 6 Polarization: -6.15 SS G_CDS: 0.10 Total: -6.05 kcal Atomic # 7 Polarization: -51.11 SS G_CDS: 0.32 Total: -50.79 kcal Atomic # 8 Polarization: -11.29 SS G_CDS: 0.09 Total: -11.20 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 16 Polarization: -2.76 SS G_CDS: -2.26 Total: -5.02 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -27.65 -9.52 -37.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115484756.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.593 kcal (2) G-P(sol) polarization free energy of solvation -27.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds