Wall clock time and date at job start Tue Mar 31 2020 10:37:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.47016 * 2 1 4 4 H 1.09001 * 109.46826 * 306.25636 * 3 2 1 5 5 S 1.81396 * 109.46932 * 186.26494 * 3 2 1 6 6 C 1.81399 * 103.00478 * 67.41062 * 5 3 2 7 7 C 1.50695 * 109.47342 * 66.25903 * 3 2 1 8 8 O 1.21278 * 119.99714 * 100.00085 * 7 3 2 9 9 N 1.34772 * 120.00038 * 280.00166 * 7 3 2 10 10 C 1.46501 * 119.99997 * 180.02562 * 9 7 3 11 11 C 1.52999 * 109.47526 * 177.78304 * 10 9 7 12 12 N 1.46501 * 109.46994 * 54.44646 * 11 10 9 13 13 C 1.36941 * 119.99759 * 62.22032 * 12 11 10 14 14 H 1.08008 * 119.99501 * 354.31145 * 13 12 11 15 15 C 1.38805 * 119.99995 * 174.31547 * 13 12 11 16 16 N 1.31615 * 120.00305 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 120.00023 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47296 * 89.99368 * 17 15 13 19 19 H 1.48500 * 109.47192 * 210.00005 * 17 15 13 20 20 H 1.48499 * 109.47202 * 329.99852 * 17 15 13 21 21 C 1.52998 * 109.47267 * 174.45292 * 11 10 9 22 22 C 1.53006 * 109.46987 * 179.97438 * 21 11 10 23 23 C 1.52998 * 109.47004 * 299.99768 * 22 21 11 24 24 C 1.53007 * 109.46954 * 60.00120 * 23 22 21 25 25 C 1.52998 * 109.46851 * 294.45137 * 11 10 9 26 26 H 1.09001 * 109.47415 * 293.64900 * 1 2 3 27 27 H 1.08997 * 109.47226 * 53.64800 * 1 2 3 28 28 H 1.09005 * 109.47274 * 173.64815 * 1 2 3 29 29 H 1.09004 * 109.46977 * 239.99821 * 2 1 3 30 30 H 1.09005 * 109.47077 * 119.99675 * 2 1 3 31 31 H 1.09002 * 109.47216 * 63.46964 * 6 5 3 32 32 H 1.08999 * 109.47437 * 183.47179 * 6 5 3 33 33 H 1.09004 * 109.47170 * 303.47157 * 6 5 3 34 34 H 0.96997 * 120.00095 * 359.97438 * 9 7 3 35 35 H 1.09000 * 109.47401 * 57.78110 * 10 9 7 36 36 H 1.09004 * 109.47017 * 297.78516 * 10 9 7 37 37 H 0.96998 * 120.00107 * 242.49105 * 12 11 10 38 38 H 0.97000 * 120.00574 * 179.97438 * 16 15 13 39 39 H 1.09001 * 109.46787 * 299.99337 * 21 11 10 40 40 H 1.08999 * 109.47015 * 59.99959 * 21 11 10 41 41 H 1.08994 * 109.47178 * 179.97438 * 22 21 11 42 42 H 1.09000 * 109.46829 * 59.99819 * 22 21 11 43 43 H 1.08999 * 109.47404 * 300.00273 * 23 22 21 44 44 H 1.08996 * 109.46958 * 179.97438 * 23 22 21 45 45 H 1.09007 * 109.46838 * 179.97438 * 24 23 22 46 46 H 1.08999 * 109.46940 * 59.99869 * 24 23 22 47 47 H 1.08999 * 109.47404 * 300.00024 * 25 11 10 48 48 H 1.09008 * 109.47266 * 59.99922 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5880 1.9876 -0.8287 5 16 3.8443 1.4459 -0.1866 6 6 4.0811 0.8276 -1.8754 7 6 1.6681 2.1068 1.3005 8 8 2.4916 2.2125 2.1846 9 7 0.4205 2.5835 1.4812 10 6 0.0592 3.2298 2.7453 11 6 -1.3863 3.7257 2.6698 12 7 -2.2651 2.6140 2.2981 13 6 -2.3723 1.5224 3.1180 14 1 -1.7416 1.4386 3.9908 15 6 -3.2914 0.5237 2.8272 16 7 -4.0602 0.6260 1.7638 17 14 -3.4382 -0.9651 3.9460 18 1 -4.4435 -0.6919 5.0042 19 1 -3.8658 -2.1429 3.1491 20 1 -2.1218 -1.2440 4.5741 21 6 -1.8086 4.2759 4.0335 22 6 -3.2539 4.7723 3.9578 23 6 -3.3585 5.8792 2.9066 24 6 -2.9361 5.3289 1.5429 25 6 -1.4914 4.8323 1.6186 26 1 -0.3634 0.4122 0.9413 27 1 -0.3633 0.6091 -0.8276 28 1 -0.3634 -1.0214 -0.1137 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8901 31 1 3.6391 1.5279 -2.5842 32 1 5.1472 0.7281 -2.0798 33 1 3.5994 -0.1449 -1.9772 34 1 -0.2380 2.4993 0.7740 35 1 0.7242 4.0746 2.9246 36 1 0.1552 2.5126 3.5605 37 1 -2.7679 2.6494 1.4694 38 1 -4.7022 -0.0721 1.5604 39 1 -1.7337 3.4874 4.7824 40 1 -1.1547 5.1030 4.3099 41 1 -3.5550 5.1639 4.9294 42 1 -3.9080 3.9455 3.6811 43 1 -2.7043 6.7060 3.1833 44 1 -4.3882 6.2325 2.8524 45 1 -3.0110 6.1174 0.7939 46 1 -3.5902 4.5021 1.2662 47 1 -0.8376 5.6594 1.8950 48 1 -1.1905 4.4403 0.6469 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001115484756.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:37:05 Heat of formation + Delta-G solvation = -63.632215 kcal Electronic energy + Delta-G solvation = -26197.259468 eV Core-core repulsion = 22798.054540 eV Total energy + Delta-G solvation = -3399.204928 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.177 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.11925 -39.86976 -36.05120 -35.67884 -34.94795 -32.69416 -31.54431 -30.29058 -29.74208 -28.99512 -26.55769 -25.66206 -23.56535 -23.15020 -21.74364 -21.33411 -19.80359 -19.03012 -18.37923 -17.69466 -16.82902 -16.56119 -16.34435 -15.99392 -15.62660 -15.34948 -15.07096 -14.99887 -14.81527 -14.53320 -14.34307 -14.23464 -13.83489 -13.53202 -13.45097 -13.38500 -13.22455 -12.89742 -12.82165 -12.62993 -12.56652 -12.51348 -12.29942 -12.04472 -12.00846 -11.86508 -11.65779 -11.29684 -11.09033 -10.93320 -10.79566 -10.69050 -10.66324 -9.90658 -8.86844 -8.70313 -7.84207 -5.07594 0.49537 1.43755 1.48586 1.52088 1.55834 1.68942 2.34116 2.60456 3.48490 3.65583 3.69971 3.83880 3.93744 3.96760 4.03603 4.15245 4.27740 4.37700 4.40751 4.41260 4.43554 4.49357 4.67994 4.68767 4.76393 4.78181 4.83008 4.91438 4.91923 4.97542 5.03465 5.08137 5.12501 5.19816 5.23680 5.45389 5.46573 5.50374 5.52460 5.58051 5.64279 5.70074 5.82587 6.38363 6.60019 7.25034 7.48420 8.19482 8.47353 9.37689 Molecular weight = 314.18amu Principal moments of inertia in cm(-1) A = 0.011705 B = 0.005197 C = 0.004081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2391.609782 B = 5386.937375 C = 6859.079038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.099 4.099 3 C -0.073 4.073 4 H 0.128 0.872 5 S -0.256 6.256 6 C -0.122 4.122 7 C 0.525 3.475 8 O -0.577 6.577 9 N -0.687 5.687 10 C 0.122 3.878 11 C 0.191 3.809 12 N -0.705 5.705 13 C -0.202 4.202 14 H 0.057 0.943 15 C -0.052 4.052 16 N -0.953 5.953 17 Si 0.935 3.065 18 H -0.296 1.296 19 H -0.299 1.299 20 H -0.286 1.286 21 C -0.113 4.113 22 C -0.105 4.105 23 C -0.108 4.108 24 C -0.112 4.112 25 C -0.108 4.108 26 H 0.049 0.951 27 H 0.070 0.930 28 H 0.058 0.942 29 H 0.099 0.901 30 H 0.056 0.944 31 H 0.091 0.909 32 H 0.116 0.884 33 H 0.089 0.911 34 H 0.408 0.592 35 H 0.064 0.936 36 H 0.032 0.968 37 H 0.378 0.622 38 H 0.246 0.754 39 H 0.037 0.963 40 H 0.070 0.930 41 H 0.055 0.945 42 H 0.042 0.958 43 H 0.072 0.928 44 H 0.058 0.942 45 H 0.074 0.926 46 H 0.045 0.955 47 H 0.081 0.919 48 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.618 7.049 -8.446 13.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.138 4.138 3 C -0.205 4.205 4 H 0.146 0.854 5 S -0.029 6.029 6 C -0.291 4.291 7 C 0.310 3.690 8 O -0.457 6.457 9 N -0.338 5.338 10 C -0.005 4.005 11 C 0.100 3.900 12 N -0.346 5.346 13 C -0.334 4.334 14 H 0.075 0.925 15 C -0.245 4.245 16 N -0.604 5.604 17 Si 0.768 3.232 18 H -0.224 1.224 19 H -0.226 1.226 20 H -0.212 1.212 21 C -0.153 4.153 22 C -0.143 4.143 23 C -0.145 4.145 24 C -0.149 4.149 25 C -0.146 4.146 26 H 0.068 0.932 27 H 0.089 0.911 28 H 0.077 0.923 29 H 0.117 0.883 30 H 0.075 0.925 31 H 0.110 0.890 32 H 0.135 0.865 33 H 0.108 0.892 34 H 0.246 0.754 35 H 0.082 0.918 36 H 0.050 0.950 37 H 0.212 0.788 38 H 0.055 0.945 39 H 0.056 0.944 40 H 0.089 0.911 41 H 0.073 0.927 42 H 0.061 0.939 43 H 0.091 0.909 44 H 0.077 0.923 45 H 0.093 0.907 46 H 0.064 0.936 47 H 0.100 0.900 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 9.994 7.341 -6.957 14.219 hybrid contribution -1.818 -1.833 -0.322 2.602 sum 8.176 5.508 -7.280 12.255 Atomic orbital electron populations 1.21896 0.94088 1.02692 1.02809 1.21681 0.96494 0.91978 1.03674 1.23387 0.96556 1.01274 0.99263 0.85371 1.87530 1.05941 1.87531 1.21925 1.23608 1.07381 1.04602 0.93480 1.20097 0.82347 0.78017 0.88538 1.90670 1.50795 1.58901 1.45358 1.45757 1.11441 1.58068 1.18505 1.21774 0.97726 0.95827 0.85161 1.19996 0.87292 0.88031 0.94689 1.42423 1.51573 1.16372 1.24249 1.19083 1.13186 0.96884 1.04291 0.92521 1.24977 0.99632 1.00702 0.99203 1.69718 1.27062 1.35135 1.28524 0.85720 0.77054 0.81486 0.78940 1.22437 1.22616 1.21190 1.21773 0.97081 0.99289 0.97172 1.21293 0.96489 0.98095 0.98434 1.21447 1.01033 0.97392 0.94629 1.21423 0.95914 1.00108 0.97471 1.21655 0.97673 0.97254 0.97976 0.93211 0.91126 0.92305 0.88270 0.92546 0.89039 0.86538 0.89198 0.75398 0.91762 0.94996 0.78762 0.94508 0.94381 0.91148 0.92654 0.93913 0.90917 0.92281 0.90720 0.93615 0.90035 0.91949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.57 8.94 71.98 0.64 -3.93 16 2 C -0.10 -2.55 5.35 30.59 0.16 -2.39 16 3 C -0.07 -1.96 2.63 29.85 0.08 -1.88 16 4 H 0.13 2.75 8.13 -2.39 -0.02 2.73 16 5 S -0.26 -6.81 21.02 -56.49 -1.19 -8.00 16 6 C -0.12 -1.86 10.55 113.37 1.20 -0.67 16 7 C 0.52 18.23 6.64 87.66 0.58 18.81 16 8 O -0.58 -24.60 16.04 -3.02 -0.05 -24.65 16 9 N -0.69 -22.74 4.05 -463.07 -1.87 -24.61 16 10 C 0.12 4.28 4.35 86.38 0.38 4.66 16 11 C 0.19 6.38 0.41 3.60 0.00 6.38 16 12 N -0.71 -29.21 3.42 -303.34 -1.04 -30.25 16 13 C -0.20 -9.92 8.70 84.03 0.73 -9.19 16 14 H 0.06 2.91 6.78 -2.91 -0.02 2.89 16 15 C -0.05 -2.73 5.50 84.86 0.47 -2.27 16 16 N -0.95 -52.53 13.07 21.65 0.28 -52.25 16 17 Si 0.94 44.95 29.55 68.60 2.03 46.98 16 18 H -0.30 -14.35 7.11 99.48 0.71 -13.65 16 19 H -0.30 -14.58 7.11 99.48 0.71 -13.88 16 20 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 21 C -0.11 -3.73 4.53 30.60 0.14 -3.59 16 22 C -0.11 -3.38 5.77 30.60 0.18 -3.20 16 23 C -0.11 -2.80 5.92 30.60 0.18 -2.62 16 24 C -0.11 -2.99 5.75 30.58 0.18 -2.81 16 25 C -0.11 -2.90 4.64 30.58 0.14 -2.76 16 26 H 0.05 1.84 6.44 -2.39 -0.02 1.83 16 27 H 0.07 1.80 8.13 -2.39 -0.02 1.78 16 28 H 0.06 1.73 8.14 -2.38 -0.02 1.71 16 29 H 0.10 1.96 6.76 -2.39 -0.02 1.94 16 30 H 0.06 1.71 8.14 -2.38 -0.02 1.69 16 31 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.12 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.09 1.18 6.96 -2.39 -0.02 1.16 16 34 H 0.41 12.78 6.23 -92.71 -0.58 12.20 16 35 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 36 H 0.03 1.33 7.48 -2.38 -0.02 1.31 16 37 H 0.38 16.87 6.62 -92.71 -0.61 16.26 16 38 H 0.25 13.57 8.31 -92.71 -0.77 12.80 16 39 H 0.04 1.43 7.27 -2.39 -0.02 1.41 16 40 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 41 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 42 H 0.04 1.72 7.60 -2.39 -0.02 1.70 16 43 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 44 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 45 H 0.07 1.65 8.14 -2.38 -0.02 1.63 16 46 H 0.05 1.50 6.91 -2.39 -0.02 1.49 16 47 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 48 H 0.06 1.62 7.27 -2.38 -0.02 1.60 16 Total: -1.00 -62.48 378.60 2.97 -59.52 By element: Atomic # 1 Polarization: 38.96 SS G_CDS: -0.25 Total: 38.71 kcal Atomic # 6 Polarization: -10.50 SS G_CDS: 5.05 Total: -5.45 kcal Atomic # 7 Polarization: -104.48 SS G_CDS: -2.63 Total: -107.10 kcal Atomic # 8 Polarization: -24.60 SS G_CDS: -0.05 Total: -24.65 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Atomic # 16 Polarization: -6.81 SS G_CDS: -1.19 Total: -8.00 kcal Total: -62.48 2.97 -59.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115484756.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.117 kcal (2) G-P(sol) polarization free energy of solvation -62.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds