Wall clock time and date at job start Tue Mar 31 2020 10:50:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.47165 * 2 1 4 4 N 1.46903 * 109.46631 * 183.45617 * 3 2 1 5 5 C 1.46900 * 110.99798 * 297.74851 * 4 3 2 6 6 C 1.50705 * 109.47135 * 284.89777 * 5 4 3 7 7 H 1.07995 * 120.00039 * 355.62901 * 6 5 4 8 8 C 1.37872 * 119.99594 * 175.63229 * 6 5 4 9 9 N 1.31514 * 120.00307 * 0.02562 * 8 6 5 10 10 Si 1.86809 * 119.99674 * 179.97438 * 8 6 5 11 11 H 1.48492 * 109.47145 * 359.97438 * 10 8 6 12 12 H 1.48502 * 109.46772 * 120.00271 * 10 8 6 13 13 H 1.48503 * 109.46954 * 239.99985 * 10 8 6 14 14 C 1.46891 * 111.00460 * 61.70764 * 4 3 2 15 15 C 1.50703 * 109.47221 * 66.04012 * 14 4 3 16 16 C 1.36606 * 120.92459 * 259.99879 * 15 14 4 17 17 C 1.39290 * 119.93035 * 180.02562 * 16 15 14 18 18 N 1.31100 * 121.75818 * 0.02562 * 17 16 15 19 19 C 1.33651 * 121.33795 * 359.97438 * 18 17 16 20 20 C 1.40651 * 121.01678 * 180.02562 * 19 18 17 21 21 C 1.35972 * 119.82327 * 179.13025 * 20 19 18 22 22 C 1.39844 * 121.00890 * 0.87732 * 21 20 19 23 23 O 1.35898 * 119.62482 * 179.38724 * 22 21 20 24 24 C 1.42900 * 116.99882 * 0.02562 * 23 22 21 25 25 C 1.36599 * 120.75551 * 359.40577 * 22 21 20 26 26 C 1.40360 * 119.57926 * 0.02562 * 25 22 21 27 27 H 1.08996 * 109.47381 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47147 * 300.00526 * 1 2 3 29 29 H 1.09001 * 109.46686 * 60.00406 * 1 2 3 30 30 H 1.08996 * 109.47147 * 239.99474 * 2 1 3 31 31 H 1.09001 * 109.46686 * 119.99594 * 2 1 3 32 32 H 1.08993 * 109.47140 * 63.45247 * 3 2 1 33 33 H 1.08999 * 109.46484 * 303.45140 * 3 2 1 34 34 H 1.08994 * 109.47426 * 44.89717 * 5 4 3 35 35 H 1.09005 * 109.46536 * 164.89973 * 5 4 3 36 36 H 0.97000 * 119.99555 * 179.97438 * 9 8 6 37 37 H 1.08997 * 109.47249 * 186.04480 * 14 4 3 38 38 H 1.09007 * 109.47062 * 306.04641 * 14 4 3 39 39 H 1.07993 * 120.03264 * 359.97438 * 16 15 14 40 40 H 1.08005 * 119.12042 * 180.02562 * 17 16 15 41 41 H 1.08009 * 120.08599 * 359.96130 * 20 19 18 42 42 H 1.07996 * 119.49555 * 180.26006 * 21 20 19 43 43 H 1.09001 * 109.46886 * 300.00552 * 24 23 22 44 44 H 1.08997 * 109.47033 * 59.99900 * 24 23 22 45 45 H 1.08997 * 109.47289 * 180.02562 * 24 23 22 46 46 H 1.07999 * 120.21298 * 180.02562 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5067 1.4432 -0.0835 5 6 4.1008 0.7807 1.0853 6 6 4.0072 1.6928 2.2813 7 1 3.6166 2.6933 2.1682 8 6 4.4202 1.2499 3.5199 9 7 4.8964 0.0318 3.6576 10 14 4.3048 2.3808 5.0023 11 1 3.7406 3.6891 4.5841 12 1 3.4232 1.7655 6.0267 13 1 5.6597 2.5867 5.5745 14 6 3.9633 0.8179 -1.3318 15 6 3.5370 1.6649 -2.5031 16 6 2.4363 1.3371 -3.2428 17 6 2.0613 2.1344 -4.3216 18 7 2.7395 3.2051 -4.6570 19 6 3.8257 3.5817 -3.9754 20 6 4.5480 4.7319 -4.3408 21 6 5.6394 5.1026 -3.6196 22 6 6.0705 4.3464 -2.5250 23 8 7.1723 4.7360 -1.8315 24 6 7.8336 5.9219 -2.2771 25 6 5.3968 3.2204 -2.1452 26 6 4.2595 2.8183 -2.8626 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.7281 1.9382 0.9193 33 1 1.6270 1.9738 -0.8575 34 1 3.5627 -0.1446 1.2910 35 1 5.1476 0.5547 0.8817 36 1 5.1873 -0.2796 4.5290 37 1 5.0500 0.7345 -1.3200 38 1 3.5236 -0.1754 -1.4226 39 1 1.8580 0.4603 -2.9918 40 1 1.1885 1.8634 -4.8972 41 1 4.2286 5.3267 -5.1839 42 1 6.1876 5.9891 -3.9023 43 1 8.1674 5.7870 -3.3059 44 1 7.1430 6.7637 -2.2267 45 1 8.6948 6.1193 -1.6388 46 1 5.7372 2.6432 -1.2982 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001141151099.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:50:07 Heat of formation + Delta-G solvation = 18.431207 kcal Electronic energy + Delta-G solvation = -26470.976504 eV Core-core repulsion = 22939.886162 eV Total energy + Delta-G solvation = -3531.090342 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.91780 -39.19453 -37.59012 -35.81633 -33.82376 -32.85371 -31.65479 -30.37265 -29.81564 -27.55476 -27.00451 -26.39008 -24.30094 -23.35450 -23.01961 -22.15441 -21.02420 -19.21711 -18.57844 -17.62695 -16.70415 -16.15113 -15.83051 -15.72173 -15.20153 -14.96973 -14.70521 -14.30828 -14.13195 -14.02673 -13.65689 -13.48918 -13.32696 -13.05705 -12.71974 -12.45215 -12.08697 -12.07724 -11.89067 -11.51959 -11.24043 -11.16215 -11.02446 -10.99239 -10.92700 -10.67718 -10.63833 -10.50066 -10.04649 -9.97754 -9.72329 -9.36001 -9.17602 -8.52242 -8.41213 -7.68847 -7.21152 -6.01546 -4.02006 0.55743 0.99360 2.16754 3.04779 3.31634 3.34212 3.39409 3.44945 4.24009 4.39881 4.45063 4.69520 4.79011 4.84672 4.97297 5.07758 5.10245 5.16924 5.18844 5.31571 5.34032 5.41998 5.46246 5.48069 5.65667 5.70182 5.77536 5.86779 5.96164 6.02909 6.07737 6.15076 6.21508 6.26540 6.34907 6.40145 6.43389 6.45348 6.67012 6.77640 6.87902 6.89474 7.22411 7.38792 7.44668 7.82502 8.06304 8.07712 8.15787 8.52080 9.06487 9.62176 11.08762 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.010093 B = 0.005067 C = 0.003614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2773.575917 B = 5524.507309 C = 7746.308917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.164 4.164 3 C 0.065 3.935 4 N -0.524 5.524 5 C 0.188 3.812 6 C -0.499 4.499 7 H 0.063 0.937 8 C 0.055 3.945 9 N -0.900 5.900 10 Si 0.894 3.106 11 H -0.272 1.272 12 H -0.286 1.286 13 H -0.285 1.285 14 C 0.079 3.921 15 C 0.000 4.000 16 C -0.174 4.174 17 C 0.122 3.878 18 N -0.478 5.478 19 C 0.096 3.904 20 C -0.065 4.065 21 C -0.171 4.171 22 C 0.114 3.886 23 O -0.311 6.311 24 C 0.027 3.973 25 C -0.112 4.112 26 C -0.049 4.049 27 H 0.046 0.954 28 H 0.053 0.947 29 H 0.047 0.953 30 H 0.053 0.947 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.053 0.947 34 H 0.007 0.993 35 H 0.024 0.976 36 H 0.260 0.740 37 H 0.083 0.917 38 H 0.045 0.955 39 H 0.133 0.867 40 H 0.154 0.846 41 H 0.135 0.865 42 H 0.132 0.868 43 H 0.052 0.948 44 H 0.054 0.946 45 H 0.099 0.901 46 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.088 5.870 -15.760 16.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.203 4.203 3 C -0.064 4.064 4 N -0.247 5.247 5 C 0.063 3.937 6 C -0.538 4.538 7 H 0.081 0.919 8 C -0.145 4.145 9 N -0.540 5.540 10 Si 0.723 3.277 11 H -0.197 1.197 12 H -0.212 1.212 13 H -0.211 1.211 14 C -0.048 4.048 15 C -0.009 4.009 16 C -0.195 4.195 17 C -0.051 4.051 18 N -0.187 5.187 19 C -0.025 4.025 20 C -0.084 4.084 21 C -0.191 4.191 22 C 0.069 3.931 23 O -0.225 6.225 24 C -0.068 4.068 25 C -0.131 4.131 26 C -0.051 4.051 27 H 0.065 0.935 28 H 0.072 0.928 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.093 0.907 32 H 0.098 0.902 33 H 0.071 0.929 34 H 0.025 0.975 35 H 0.042 0.958 36 H 0.069 0.931 37 H 0.101 0.899 38 H 0.063 0.937 39 H 0.150 0.850 40 H 0.171 0.829 41 H 0.152 0.848 42 H 0.149 0.851 43 H 0.071 0.929 44 H 0.072 0.928 45 H 0.117 0.883 46 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -0.909 6.759 -16.147 17.528 hybrid contribution -0.065 -0.628 1.491 1.619 sum -0.974 6.132 -14.656 15.917 Atomic orbital electron populations 1.21653 0.96357 1.00740 1.01324 1.22197 0.95647 1.00322 1.02174 1.22072 0.88253 0.94378 1.01686 1.62403 1.06661 1.54517 1.01147 1.19856 0.94186 0.93558 0.86077 1.21162 1.41168 0.99793 0.91687 0.91891 1.24955 0.95554 0.95133 0.98893 1.69960 1.43408 1.16668 1.23948 0.86492 0.77643 0.80983 0.82630 1.19693 1.21189 1.21071 1.21157 1.00882 0.94110 0.88688 1.20228 0.92894 0.93162 0.94576 1.21763 0.98084 1.02202 0.97453 1.22754 0.97888 0.90097 0.94319 1.67916 1.06044 1.15581 1.29111 1.18793 0.94022 0.96215 0.93520 1.20510 0.93817 0.94805 0.99274 1.21050 0.99592 1.01401 0.97050 1.18671 0.88070 0.94602 0.91748 1.86175 1.38926 1.43270 1.54109 1.23038 0.97204 0.86021 1.00549 1.20344 0.94828 0.96638 1.01329 1.18351 0.95773 0.95481 0.95512 0.93527 0.92772 0.93404 0.92867 0.90654 0.90211 0.92856 0.97482 0.95795 0.93063 0.89920 0.93695 0.84953 0.82909 0.84765 0.85055 0.92922 0.92768 0.88299 0.83352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 9.91 37.16 0.37 -1.62 16 2 C -0.16 -2.75 5.31 -26.73 -0.14 -2.89 16 3 C 0.06 1.21 4.98 -3.82 -0.02 1.19 16 4 N -0.52 -10.74 4.62 -237.52 -1.10 -11.84 16 5 C 0.19 4.65 4.63 -4.97 -0.02 4.63 16 6 C -0.50 -13.73 8.61 -34.44 -0.30 -14.02 16 7 H 0.06 1.76 7.81 -52.49 -0.41 1.35 16 8 C 0.06 1.55 5.46 -17.82 -0.10 1.46 16 9 N -0.90 -26.26 13.29 55.43 0.74 -25.53 16 10 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 11 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 12 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 13 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 14 C 0.08 1.38 4.18 -4.98 -0.02 1.36 16 15 C 0.00 0.00 4.61 -104.26 -0.48 -0.48 16 16 C -0.17 -2.37 8.73 -39.78 -0.35 -2.71 16 17 C 0.12 1.58 11.14 -17.47 -0.19 1.39 16 18 N -0.48 -7.18 10.34 -10.96 -0.11 -7.30 16 19 C 0.10 1.49 6.61 -84.83 -0.56 0.93 16 20 C -0.07 -0.87 9.97 -39.48 -0.39 -1.26 16 21 C -0.17 -2.14 8.93 -39.79 -0.36 -2.49 16 22 C 0.11 1.72 6.64 -39.57 -0.26 1.46 16 23 O -0.31 -4.55 10.47 -19.42 -0.20 -4.75 16 24 C 0.03 0.25 9.80 101.05 0.99 1.25 16 25 C -0.11 -1.90 9.24 -39.38 -0.36 -2.26 16 26 C -0.05 -0.81 5.74 -106.81 -0.61 -1.42 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.05 0.82 5.83 -51.93 -0.30 0.52 16 31 H 0.07 1.48 6.33 -51.93 -0.33 1.15 16 32 H 0.08 1.66 7.56 -51.93 -0.39 1.27 16 33 H 0.05 0.93 6.56 -51.93 -0.34 0.59 16 34 H 0.01 0.19 5.82 -51.93 -0.30 -0.11 16 35 H 0.02 0.63 7.75 -51.93 -0.40 0.23 16 36 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 37 H 0.08 1.46 6.78 -51.93 -0.35 1.10 16 38 H 0.05 0.74 5.88 -51.92 -0.31 0.43 16 39 H 0.13 1.55 7.74 -52.49 -0.41 1.14 16 40 H 0.15 1.45 8.06 -52.48 -0.42 1.03 16 41 H 0.13 1.48 8.06 -52.48 -0.42 1.05 16 42 H 0.13 1.22 6.22 -52.49 -0.33 0.89 16 43 H 0.05 0.40 7.64 -51.93 -0.40 0.01 16 44 H 0.05 0.45 7.64 -51.93 -0.40 0.05 16 45 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 46 H 0.15 2.75 6.69 -52.49 -0.35 2.40 16 LS Contribution 367.30 15.07 5.54 5.54 Total: -1.00 -31.13 367.30 -9.66 -40.79 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -6.68 Total: 1.97 kcal Atomic # 6 Polarization: -12.70 SS G_CDS: -2.81 Total: -15.51 kcal Atomic # 7 Polarization: -44.19 SS G_CDS: -0.48 Total: -44.66 kcal Atomic # 8 Polarization: -4.55 SS G_CDS: -0.20 Total: -4.75 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -31.13 -9.66 -40.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001141151099.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.223 kcal (2) G-P(sol) polarization free energy of solvation -31.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.792 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds