Wall clock time and date at job start Tue Mar 31 2020 10:48:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.46993 * 2 1 4 4 N 1.46901 * 109.47628 * 120.00113 * 2 1 3 5 5 C 1.46898 * 110.99722 * 306.04921 * 4 2 1 6 6 C 1.46902 * 110.99598 * 69.99818 * 4 2 1 7 7 C 1.53002 * 109.46673 * 170.00524 * 6 4 2 8 8 H 1.09004 * 109.58841 * 50.91514 * 7 6 4 9 9 C 1.53195 * 109.70228 * 171.27101 * 7 6 4 10 10 C 1.53044 * 109.31214 * 174.49017 * 9 7 6 11 11 C 1.53039 * 109.53702 * 298.63449 * 10 9 7 12 12 C 1.52761 * 109.38336 * 61.24176 * 11 10 9 13 13 N 1.46924 * 109.00727 * 305.58656 * 12 11 10 14 14 C 1.34782 * 120.63122 * 233.58191 * 13 12 11 15 15 O 1.21281 * 120.00119 * 173.74700 * 14 13 12 16 16 C 1.50696 * 119.99642 * 353.75432 * 14 13 12 17 17 S 1.81007 * 109.47124 * 179.97438 * 16 14 13 18 18 C 1.76197 * 100.00018 * 179.97438 * 17 16 14 19 19 H 1.08003 * 120.00318 * 0.02562 * 18 17 16 20 20 C 1.38798 * 119.99807 * 180.02562 * 18 17 16 21 21 N 1.31632 * 120.00340 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99986 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47355 * 179.97438 * 22 20 18 24 24 H 1.48503 * 109.47362 * 59.99785 * 22 20 18 25 25 H 1.48498 * 109.47369 * 299.99860 * 22 20 18 26 26 H 1.08995 * 109.47065 * 299.99803 * 1 2 3 27 27 H 1.08998 * 109.47356 * 59.99809 * 1 2 3 28 28 H 1.08998 * 109.46992 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.47421 * 240.00545 * 2 1 3 30 30 H 1.09005 * 109.46865 * 180.02562 * 3 2 1 31 31 H 1.08996 * 109.47082 * 299.99746 * 3 2 1 32 32 H 1.08995 * 109.47054 * 60.00190 * 3 2 1 33 33 H 1.08998 * 109.47161 * 183.94881 * 5 4 2 34 34 H 1.08996 * 109.47128 * 303.95211 * 5 4 2 35 35 H 1.08999 * 109.47288 * 63.94736 * 5 4 2 36 36 H 1.08994 * 109.47111 * 50.00893 * 6 4 2 37 37 H 1.09000 * 109.47403 * 290.00281 * 6 4 2 38 38 H 1.08992 * 109.49581 * 294.44143 * 9 7 6 39 39 H 1.09002 * 109.49422 * 54.54236 * 9 7 6 40 40 H 1.09003 * 109.45555 * 58.65426 * 10 9 7 41 41 H 1.08993 * 109.46005 * 178.61551 * 10 9 7 42 42 H 1.09001 * 109.49603 * 181.31533 * 11 10 9 43 43 H 1.08991 * 109.49837 * 301.38071 * 11 10 9 44 44 H 1.09003 * 109.51221 * 185.70461 * 12 11 10 45 45 H 1.09005 * 109.43462 * 65.42045 * 12 11 10 46 46 H 1.08999 * 109.47469 * 59.99817 * 16 14 13 47 47 H 1.09002 * 109.47771 * 299.99571 * 16 14 13 48 48 H 0.97001 * 119.99392 * 0.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 1.4343 -0.1149 2.4166 6 6 1.7529 -2.1349 1.1202 7 6 2.4885 -2.8525 2.2538 8 1 2.2625 -2.3651 3.2022 9 6 2.0452 -4.3178 2.3109 10 6 2.8837 -5.0599 3.3542 11 6 4.3591 -5.0170 2.9498 12 6 4.8281 -3.5642 2.8965 13 7 3.9364 -2.8057 2.0086 14 6 4.4367 -2.0851 0.9854 15 8 3.6868 -1.5561 0.1925 16 6 5.9279 -1.9369 0.8264 17 16 6.2815 -0.9216 -0.6298 18 6 8.0426 -0.9125 -0.5761 19 1 8.5618 -1.4419 0.2092 20 6 8.7628 -0.2249 -1.5430 21 7 8.1302 0.4200 -2.5005 22 14 10.6299 -0.2157 -1.4865 23 1 11.1557 0.5831 -2.6226 24 1 11.1351 -1.6087 -1.5859 25 1 11.0836 0.3851 -0.2065 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.8664 -0.5988 3.2925 34 1 1.6466 0.9536 2.4501 35 1 0.3556 -0.2710 2.4104 36 1 2.1026 -2.5169 0.1611 37 1 0.6814 -2.3119 1.2131 38 1 0.9922 -4.3687 2.5873 39 1 2.1883 -4.7795 1.3339 40 1 2.7596 -4.5824 4.3262 41 1 2.5537 -6.0969 3.4144 42 1 4.9528 -5.5657 3.6810 43 1 4.4803 -5.4727 1.9671 44 1 5.8472 -3.5245 2.5116 45 1 4.7968 -3.1360 3.8984 46 1 6.3796 -2.9210 0.7011 47 1 6.3421 -1.4574 1.7133 48 1 7.1607 0.4149 -2.5300 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157572820.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:48:27 Heat of formation + Delta-G solvation = -6.589700 kcal Electronic energy + Delta-G solvation = -26099.631026 eV Core-core repulsion = 22702.899647 eV Total energy + Delta-G solvation = -3396.731379 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.177 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.37265 -37.80105 -36.97644 -33.09038 -32.68893 -32.45231 -30.42629 -28.94472 -27.36657 -26.72198 -25.33991 -24.72564 -23.89437 -21.73827 -20.88119 -19.34319 -18.85241 -18.00636 -16.58514 -16.14647 -15.74447 -15.12108 -14.87062 -14.63414 -14.31362 -14.12472 -13.93296 -13.80159 -13.46163 -13.36421 -13.10217 -12.81753 -12.65142 -12.36445 -12.27175 -11.98910 -11.93151 -11.75096 -11.68255 -11.43723 -11.24634 -11.05300 -10.95164 -10.88724 -10.85572 -10.71877 -10.48664 -10.27421 -10.14222 -9.45978 -8.94987 -8.50117 -8.25764 -8.11094 -7.66512 -6.55898 -6.55411 -3.91070 3.01536 3.31710 3.37566 3.40965 3.57923 3.64323 4.19080 4.31088 4.60193 4.69716 4.78452 5.01208 5.06853 5.18134 5.19271 5.21803 5.28561 5.32628 5.35634 5.41429 5.50956 5.55318 5.58164 5.63939 5.65028 5.73544 5.74513 5.83878 5.85928 5.88291 5.90858 5.93423 5.98999 6.04527 6.10633 6.13638 6.16120 6.20806 6.35235 6.56736 6.74473 6.86893 7.50872 7.56598 7.82556 7.98485 8.56789 8.89757 9.33853 10.88234 Molecular weight = 314.18amu Principal moments of inertia in cm(-1) A = 0.012869 B = 0.004680 C = 0.003603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2175.168122 B = 5980.905267 C = 7769.156472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.093 3.907 3 C -0.139 4.139 4 N -0.495 5.495 5 C 0.009 3.991 6 C 0.068 3.932 7 C 0.155 3.845 8 H 0.066 0.934 9 C -0.131 4.131 10 C -0.116 4.116 11 C -0.136 4.136 12 C 0.110 3.890 13 N -0.614 5.614 14 C 0.530 3.470 15 O -0.470 6.470 16 C -0.126 4.126 17 S -0.112 6.112 18 C -0.606 4.606 19 H 0.062 0.938 20 C 0.036 3.964 21 N -0.886 5.886 22 Si 1.081 2.919 23 H -0.278 1.278 24 H -0.286 1.286 25 H -0.286 1.286 26 H 0.052 0.948 27 H 0.055 0.945 28 H 0.048 0.952 29 H 0.089 0.911 30 H 0.071 0.929 31 H 0.050 0.950 32 H 0.044 0.956 33 H 0.057 0.943 34 H 0.065 0.935 35 H 0.018 0.982 36 H 0.099 0.901 37 H 0.018 0.982 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.061 0.939 41 H 0.062 0.938 42 H 0.072 0.928 43 H 0.067 0.933 44 H 0.086 0.914 45 H 0.061 0.939 46 H 0.082 0.918 47 H 0.084 0.916 48 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.105 -8.352 12.701 20.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.015 4.015 3 C -0.197 4.197 4 N -0.218 5.218 5 C -0.139 4.139 6 C -0.060 4.060 7 C 0.051 3.949 8 H 0.083 0.917 9 C -0.170 4.170 10 C -0.153 4.153 11 C -0.174 4.174 12 C -0.013 4.013 13 N -0.351 5.351 14 C 0.317 3.683 15 O -0.340 6.340 16 C -0.277 4.277 17 S 0.114 5.886 18 C -0.754 4.754 19 H 0.081 0.919 20 C -0.175 4.175 21 N -0.521 5.521 22 Si 0.908 3.092 23 H -0.203 1.203 24 H -0.212 1.212 25 H -0.212 1.212 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.068 0.932 29 H 0.107 0.893 30 H 0.090 0.910 31 H 0.069 0.931 32 H 0.063 0.937 33 H 0.076 0.924 34 H 0.084 0.916 35 H 0.037 0.963 36 H 0.117 0.883 37 H 0.036 0.964 38 H 0.087 0.913 39 H 0.086 0.914 40 H 0.080 0.920 41 H 0.081 0.919 42 H 0.090 0.910 43 H 0.086 0.914 44 H 0.104 0.896 45 H 0.079 0.921 46 H 0.100 0.900 47 H 0.102 0.898 48 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -13.363 -6.888 10.724 18.467 hybrid contribution -1.150 -1.464 2.067 2.782 sum -14.513 -8.353 12.790 21.071 Atomic orbital electron populations 1.22543 0.99133 1.01160 1.01701 1.21508 0.90462 0.95467 0.94063 1.21779 1.03036 0.94713 1.00135 1.62476 1.56569 1.01812 1.00970 1.22572 0.96326 1.00675 0.94308 1.22273 0.94788 0.88840 1.00082 1.21185 0.80678 0.94482 0.98603 0.91654 1.21952 0.99378 0.95517 1.00144 1.21470 0.95066 1.00211 0.98594 1.21855 0.96441 0.96825 1.02310 1.21547 0.94522 0.90926 0.94348 1.47875 1.05700 1.50273 1.31301 1.19975 0.89713 0.77887 0.80746 1.90695 1.57982 1.44450 1.40913 1.23362 0.95227 1.04206 1.04896 1.84671 1.07944 1.65471 1.30509 1.23723 0.90674 1.42045 1.19002 0.91936 1.25982 1.07255 0.92446 0.91786 1.70797 1.11486 1.38380 1.31397 0.83366 0.72939 0.76534 0.76380 1.20347 1.21233 1.21215 0.92863 0.92557 0.93249 0.89273 0.90970 0.93076 0.93722 0.92405 0.91649 0.96339 0.88272 0.96439 0.91306 0.91358 0.91989 0.91890 0.90951 0.91423 0.89581 0.92074 0.89975 0.89807 0.91010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.27 8.44 37.15 0.31 -1.96 16 2 C 0.09 1.40 2.23 -67.71 -0.15 1.24 16 3 C -0.14 -2.11 9.12 37.16 0.34 -1.77 16 4 N -0.49 -7.39 2.48 -234.89 -0.58 -7.97 16 5 C 0.01 0.12 8.45 60.06 0.51 0.63 16 6 C 0.07 0.93 3.19 -3.82 -0.01 0.92 16 7 C 0.15 1.89 2.91 -67.60 -0.20 1.69 16 8 H 0.07 0.78 6.19 -51.93 -0.32 0.46 16 9 C -0.13 -1.29 5.37 -26.61 -0.14 -1.43 16 10 C -0.12 -0.98 5.89 -26.69 -0.16 -1.14 16 11 C -0.14 -1.27 6.06 -26.83 -0.16 -1.43 16 12 C 0.11 1.26 6.29 -3.93 -0.02 1.24 16 13 N -0.61 -8.67 2.98 -165.48 -0.49 -9.17 16 14 C 0.53 9.70 7.40 -10.98 -0.08 9.62 16 15 O -0.47 -9.42 8.57 5.56 0.05 -9.37 16 16 C -0.13 -2.59 4.58 36.00 0.16 -2.42 16 17 S -0.11 -2.99 19.60 -107.50 -2.11 -5.10 16 18 C -0.61 -17.59 9.50 30.94 0.29 -17.30 16 19 H 0.06 1.75 7.80 -52.48 -0.41 1.34 16 20 C 0.04 1.04 5.49 -17.43 -0.10 0.95 16 21 N -0.89 -27.64 13.67 55.49 0.76 -26.88 16 22 Si 1.08 25.19 29.92 -169.99 -5.09 20.10 16 23 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 24 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 25 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 26 H 0.05 0.61 6.42 -51.93 -0.33 0.28 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.05 0.58 6.91 -51.93 -0.36 0.23 16 29 H 0.09 1.56 7.17 -51.93 -0.37 1.19 16 30 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 31 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.04 0.61 6.47 -51.93 -0.34 0.27 16 33 H 0.06 0.71 6.30 -51.93 -0.33 0.38 16 34 H 0.06 0.85 6.30 -51.93 -0.33 0.52 16 35 H 0.02 0.21 6.46 -51.93 -0.34 -0.12 16 36 H 0.10 1.62 6.10 -51.93 -0.32 1.30 16 37 H 0.02 0.22 7.05 -51.93 -0.37 -0.14 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 41 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.09 1.04 5.97 -51.93 -0.31 0.73 16 45 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.08 1.61 7.43 -51.92 -0.39 1.23 16 47 H 0.08 1.69 8.13 -51.92 -0.42 1.27 16 48 H 0.28 8.82 7.12 -40.82 -0.29 8.53 16 LS Contribution 366.71 15.07 5.53 5.53 Total: -1.00 -32.21 366.71 -9.58 -41.79 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -8.24 Total: 2.23 kcal Atomic # 6 Polarization: -11.75 SS G_CDS: 0.59 Total: -11.16 kcal Atomic # 7 Polarization: -43.70 SS G_CDS: -0.32 Total: -44.02 kcal Atomic # 8 Polarization: -9.42 SS G_CDS: 0.05 Total: -9.37 kcal Atomic # 14 Polarization: 25.19 SS G_CDS: -5.09 Total: 20.10 kcal Atomic # 16 Polarization: -2.99 SS G_CDS: -2.11 Total: -5.10 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.21 -9.58 -41.79 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157572820.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.201 kcal (2) G-P(sol) polarization free energy of solvation -32.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds