Wall clock time and date at job start Tue Mar 31 2020 10:48:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52993 * 1
3 3 C 1.53001 * 109.46993 * 2 1
4 4 N 1.46901 * 109.47628 * 120.00113 * 2 1 3
5 5 C 1.46898 * 110.99722 * 306.04921 * 4 2 1
6 6 C 1.46902 * 110.99598 * 69.99818 * 4 2 1
7 7 C 1.53002 * 109.46673 * 170.00524 * 6 4 2
8 8 H 1.09004 * 109.58841 * 50.91514 * 7 6 4
9 9 C 1.53195 * 109.70228 * 171.27101 * 7 6 4
10 10 C 1.53044 * 109.31214 * 174.49017 * 9 7 6
11 11 C 1.53039 * 109.53702 * 298.63449 * 10 9 7
12 12 C 1.52761 * 109.38336 * 61.24176 * 11 10 9
13 13 N 1.46924 * 109.00727 * 305.58656 * 12 11 10
14 14 C 1.34782 * 120.63122 * 233.58191 * 13 12 11
15 15 O 1.21281 * 120.00119 * 173.74700 * 14 13 12
16 16 C 1.50696 * 119.99642 * 353.75432 * 14 13 12
17 17 S 1.81007 * 109.47124 * 179.97438 * 16 14 13
18 18 C 1.76197 * 100.00018 * 179.97438 * 17 16 14
19 19 H 1.08003 * 120.00318 * 0.02562 * 18 17 16
20 20 C 1.38798 * 119.99807 * 180.02562 * 18 17 16
21 21 N 1.31632 * 120.00340 * 359.97438 * 20 18 17
22 22 Si 1.86798 * 119.99986 * 180.02562 * 20 18 17
23 23 H 1.48501 * 109.47355 * 179.97438 * 22 20 18
24 24 H 1.48503 * 109.47362 * 59.99785 * 22 20 18
25 25 H 1.48498 * 109.47369 * 299.99860 * 22 20 18
26 26 H 1.08995 * 109.47065 * 299.99803 * 1 2 3
27 27 H 1.08998 * 109.47356 * 59.99809 * 1 2 3
28 28 H 1.08998 * 109.46992 * 179.97438 * 1 2 3
29 29 H 1.09006 * 109.47421 * 240.00545 * 2 1 3
30 30 H 1.09005 * 109.46865 * 180.02562 * 3 2 1
31 31 H 1.08996 * 109.47082 * 299.99746 * 3 2 1
32 32 H 1.08995 * 109.47054 * 60.00190 * 3 2 1
33 33 H 1.08998 * 109.47161 * 183.94881 * 5 4 2
34 34 H 1.08996 * 109.47128 * 303.95211 * 5 4 2
35 35 H 1.08999 * 109.47288 * 63.94736 * 5 4 2
36 36 H 1.08994 * 109.47111 * 50.00893 * 6 4 2
37 37 H 1.09000 * 109.47403 * 290.00281 * 6 4 2
38 38 H 1.08992 * 109.49581 * 294.44143 * 9 7 6
39 39 H 1.09002 * 109.49422 * 54.54236 * 9 7 6
40 40 H 1.09003 * 109.45555 * 58.65426 * 10 9 7
41 41 H 1.08993 * 109.46005 * 178.61551 * 10 9 7
42 42 H 1.09001 * 109.49603 * 181.31533 * 11 10 9
43 43 H 1.08991 * 109.49837 * 301.38071 * 11 10 9
44 44 H 1.09003 * 109.51221 * 185.70461 * 12 11 10
45 45 H 1.09005 * 109.43462 * 65.42045 * 12 11 10
46 46 H 1.08999 * 109.47469 * 59.99817 * 16 14 13
47 47 H 1.09002 * 109.47771 * 299.99571 * 16 14 13
48 48 H 0.97001 * 119.99392 * 0.02562 * 21 20 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0399 1.4425 0.0000
4 7 2.0197 -0.6925 1.1994
5 6 1.4343 -0.1149 2.4166
6 6 1.7529 -2.1349 1.1202
7 6 2.4885 -2.8525 2.2538
8 1 2.2625 -2.3651 3.2022
9 6 2.0452 -4.3178 2.3109
10 6 2.8837 -5.0599 3.3542
11 6 4.3591 -5.0170 2.9498
12 6 4.8281 -3.5642 2.8965
13 7 3.9364 -2.8057 2.0086
14 6 4.4367 -2.0851 0.9854
15 8 3.6868 -1.5561 0.1925
16 6 5.9279 -1.9369 0.8264
17 16 6.2815 -0.9216 -0.6298
18 6 8.0426 -0.9125 -0.5761
19 1 8.5618 -1.4419 0.2092
20 6 8.7628 -0.2249 -1.5430
21 7 8.1302 0.4200 -2.5005
22 14 10.6299 -0.2157 -1.4865
23 1 11.1557 0.5831 -2.6226
24 1 11.1351 -1.6087 -1.5859
25 1 11.0836 0.3851 -0.2065
26 1 -0.3633 0.5138 0.8900
27 1 -0.3634 0.5138 -0.8899
28 1 -0.3633 -1.0277 -0.0005
29 1 1.8933 -0.5138 -0.8901
30 1 3.1300 1.4425 -0.0005
31 1 1.6766 1.9563 -0.8900
32 1 1.6766 1.9563 0.8900
33 1 1.8664 -0.5988 3.2925
34 1 1.6466 0.9536 2.4501
35 1 0.3556 -0.2710 2.4104
36 1 2.1026 -2.5169 0.1611
37 1 0.6814 -2.3119 1.2131
38 1 0.9922 -4.3687 2.5873
39 1 2.1883 -4.7795 1.3339
40 1 2.7596 -4.5824 4.3262
41 1 2.5537 -6.0969 3.4144
42 1 4.9528 -5.5657 3.6810
43 1 4.4803 -5.4727 1.9671
44 1 5.8472 -3.5245 2.5116
45 1 4.7968 -3.1360 3.8984
46 1 6.3796 -2.9210 0.7011
47 1 6.3421 -1.4574 1.7133
48 1 7.1607 0.4149 -2.5300
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001157572820.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:48:26
Heat of formation + Delta-G solvation = -25.394051 kcal
Electronic energy + Delta-G solvation = -26100.446444 eV
Core-core repulsion = 22702.899647 eV
Total energy + Delta-G solvation = -3397.546797 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 314.177 amu
Computer time = 0.67 seconds
Orbital eigenvalues (eV)
-41.54783 -38.94008 -38.14114 -34.71522 -34.19857 -33.70686 -31.47879 -30.43228
-28.45674 -27.82026 -27.03802 -26.30896 -24.85226 -22.85960 -21.78952 -20.60895
-20.44683 -19.63742 -17.85990 -17.31375 -17.01881 -16.37950 -16.31798 -15.83826
-15.70917 -15.47952 -15.15984 -15.04548 -14.71943 -14.52648 -14.36416 -14.23935
-13.95370 -13.79052 -13.59242 -13.36286 -13.30166 -12.88228 -12.85505 -12.72909
-12.49887 -12.30031 -12.07611 -11.96176 -11.94580 -11.75625 -11.57954 -11.52086
-11.46614 -11.33263 -11.07227 -10.23555 -9.88923 -9.39369 -8.89502 -8.76941
-8.75221 -6.21192 1.31302 1.52743 1.59847 1.80345 1.89061 2.23301
2.37106 3.04804 3.12662 3.17531 3.63874 3.88407 3.95216 4.03674
4.06582 4.18400 4.19207 4.24457 4.26201 4.29992 4.39976 4.42106
4.45634 4.50980 4.65116 4.71630 4.72223 4.73176 4.81512 4.86873
4.94130 4.97392 5.02013 5.07433 5.09599 5.12614 5.19876 5.24548
5.35161 5.46307 5.47651 5.65803 5.80175 6.18482 6.39451 6.50895
6.55030 7.09574 7.51588 8.54083
Molecular weight = 314.18amu
Principal moments of inertia in cm(-1)
A = 0.012869 B = 0.004680 C = 0.003603
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2175.168122 B = 5980.905267 C = 7769.156472
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.173 4.173
2 C 0.095 3.905
3 C -0.131 4.131
4 N -0.518 5.518
5 C 0.014 3.986
6 C 0.074 3.926
7 C 0.154 3.846
8 H 0.079 0.921
9 C -0.126 4.126
10 C -0.111 4.111
11 C -0.131 4.131
12 C 0.102 3.898
13 N -0.605 5.605
14 C 0.525 3.475
15 O -0.493 6.493
16 C -0.103 4.103
17 S -0.178 6.178
18 C -0.617 4.617
19 H 0.067 0.933
20 C -0.017 4.017
21 N -0.913 5.913
22 Si 1.133 2.867
23 H -0.279 1.279
24 H -0.264 1.264
25 H -0.265 1.265
26 H 0.066 0.934
27 H 0.062 0.938
28 H 0.053 0.947
29 H 0.052 0.948
30 H 0.029 0.971
31 H 0.059 0.941
32 H 0.061 0.939
33 H 0.064 0.936
34 H 0.059 0.941
35 H 0.035 0.965
36 H 0.065 0.935
37 H 0.036 0.964
38 H 0.090 0.910
39 H 0.053 0.947
40 H 0.075 0.925
41 H 0.080 0.920
42 H 0.095 0.905
43 H 0.052 0.948
44 H 0.075 0.925
45 H 0.080 0.920
46 H 0.091 0.909
47 H 0.088 0.912
48 H 0.260 0.740
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -14.752 -9.888 15.556 23.609
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.232 4.232
2 C -0.014 4.014
3 C -0.189 4.189
4 N -0.242 5.242
5 C -0.134 4.134
6 C -0.053 4.053
7 C 0.051 3.949
8 H 0.097 0.903
9 C -0.164 4.164
10 C -0.149 4.149
11 C -0.169 4.169
12 C -0.020 4.020
13 N -0.342 5.342
14 C 0.311 3.689
15 O -0.366 6.366
16 C -0.254 4.254
17 S 0.049 5.951
18 C -0.764 4.764
19 H 0.085 0.915
20 C -0.220 4.220
21 N -0.549 5.549
22 Si 0.951 3.049
23 H -0.204 1.204
24 H -0.189 1.189
25 H -0.190 1.190
26 H 0.084 0.916
27 H 0.081 0.919
28 H 0.072 0.928
29 H 0.070 0.930
30 H 0.048 0.952
31 H 0.078 0.922
32 H 0.080 0.920
33 H 0.083 0.917
34 H 0.078 0.922
35 H 0.054 0.946
36 H 0.084 0.916
37 H 0.053 0.947
38 H 0.109 0.891
39 H 0.071 0.929
40 H 0.094 0.906
41 H 0.098 0.902
42 H 0.114 0.886
43 H 0.071 0.929
44 H 0.093 0.907
45 H 0.099 0.901
46 H 0.109 0.891
47 H 0.107 0.893
48 H 0.071 0.929
Dipole moment (debyes) X Y Z Total
from point charges -14.043 -8.464 13.627 21.320
hybrid contribution -1.027 -1.036 1.250 1.921
sum -15.070 -9.500 14.878 23.210
Atomic orbital electron populations
1.22389 0.96490 1.01724 1.02625 1.21352 0.92431 0.94518 0.93060
1.21695 1.00152 0.95660 1.01387 1.62371 1.57798 1.02541 1.01537
1.22548 0.97272 1.00206 0.93375 1.22139 0.95827 0.88280 0.99094
1.21380 0.78960 0.96276 0.98267 0.90286 1.21934 1.00957 0.93450
1.00098 1.21473 0.93764 1.01167 0.98470 1.21833 0.97709 0.95046
1.02327 1.21802 0.93550 0.92270 0.94401 1.47841 1.07178 1.49043
1.30098 1.19653 0.88405 0.78897 0.81974 1.90732 1.57912 1.45786
1.42147 1.23257 0.97779 1.02964 1.01443 1.84850 1.07666 1.67661
1.34922 1.24063 0.91606 1.41723 1.19034 0.91473 1.27734 1.11993
0.91356 0.90936 1.70917 1.10550 1.40389 1.33008 0.82760 0.67087
0.77827 0.77211 1.20399 1.18920 1.18988 0.91554 0.91936 0.92810
0.92960 0.95201 0.92227 0.92001 0.91707 0.92242 0.94635 0.91641
0.94656 0.89144 0.92863 0.90601 0.90168 0.88615 0.92893 0.90662
0.90133 0.89090 0.89322 0.92869
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -4.03 8.44 71.98 0.61 -3.42 16
2 C 0.09 2.92 2.23 44.91 0.10 3.02 16
3 C -0.13 -4.15 9.12 71.98 0.66 -3.49 16
4 N -0.52 -15.47 2.48 -897.06 -2.22 -17.69 16
5 C 0.01 0.33 8.45 127.69 1.08 1.41 16
6 C 0.07 2.00 3.19 86.30 0.28 2.28 16
7 C 0.15 3.47 2.91 44.98 0.13 3.60 16
8 H 0.08 1.63 6.19 -2.38 -0.01 1.61 16
9 C -0.13 -2.11 5.37 30.67 0.16 -1.95 16
10 C -0.11 -1.46 5.89 30.62 0.18 -1.28 16
11 C -0.13 -2.07 6.06 30.53 0.19 -1.88 16
12 C 0.10 2.13 6.29 86.22 0.54 2.67 16
13 N -0.61 -16.48 2.98 -795.83 -2.37 -18.85 16
14 C 0.53 19.61 7.40 87.65 0.65 20.25 16
15 O -0.49 -20.75 8.57 -3.03 -0.03 -20.77 16
16 C -0.10 -4.32 4.58 71.23 0.33 -3.99 16
17 S -0.18 -9.92 19.60 -56.49 -1.11 -11.03 16
18 C -0.62 -36.48 9.50 67.95 0.65 -35.84 16
19 H 0.07 3.78 7.80 -2.91 -0.02 3.76 16
20 C -0.02 -1.00 5.49 84.86 0.47 -0.54 16
21 N -0.91 -58.78 13.67 21.65 0.30 -58.49 16
22 Si 1.13 50.40 29.92 68.60 2.05 52.45 16
23 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16
24 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16
25 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16
26 H 0.07 1.37 6.42 -2.39 -0.02 1.36 16
27 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16
28 H 0.05 1.20 6.91 -2.39 -0.02 1.18 16
29 H 0.05 1.98 7.17 -2.38 -0.02 1.96 16
30 H 0.03 1.17 8.14 -2.38 -0.02 1.15 16
31 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16
32 H 0.06 1.70 6.47 -2.39 -0.02 1.68 16
33 H 0.06 1.43 6.30 -2.39 -0.02 1.42 16
34 H 0.06 1.47 6.30 -2.39 -0.02 1.45 16
35 H 0.04 0.72 6.46 -2.39 -0.02 0.70 16
36 H 0.07 2.22 6.10 -2.39 -0.01 2.21 16
37 H 0.04 0.82 7.05 -2.39 -0.02 0.80 16
38 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16
39 H 0.05 1.07 8.14 -2.39 -0.02 1.06 16
40 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16
41 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16
42 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16
43 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16
44 H 0.07 1.72 5.97 -2.39 -0.01 1.71 16
45 H 0.08 1.41 8.14 -2.38 -0.02 1.39 16
46 H 0.09 3.62 7.43 -2.40 -0.02 3.60 16
47 H 0.09 3.60 8.13 -2.39 -0.02 3.58 16
48 H 0.26 17.41 7.12 -92.71 -0.66 16.75 16
Total: -1.00 -73.70 366.71 3.67 -70.04
By element:
Atomic # 1 Polarization: 22.47 SS G_CDS: 1.04 Total: 23.51 kcal
Atomic # 6 Polarization: -25.18 SS G_CDS: 6.01 Total: -19.17 kcal
Atomic # 7 Polarization: -90.73 SS G_CDS: -4.30 Total: -95.02 kcal
Atomic # 8 Polarization: -20.75 SS G_CDS: -0.03 Total: -20.77 kcal
Atomic # 14 Polarization: 50.40 SS G_CDS: 2.05 Total: 52.45 kcal
Atomic # 16 Polarization: -9.92 SS G_CDS: -1.11 Total: -11.03 kcal
Total: -73.70 3.67 -70.04 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001157572820.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 44.643 kcal
(2) G-P(sol) polarization free energy of solvation -73.704 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.062 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.668 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.037 kcal
(6) G-S(sol) free energy of system = (1) + (5) -25.394 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.67 seconds