Wall clock time and date at job start Tue Mar 31 2020 10:48:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.46993 * 2 1 4 4 N 1.46901 * 109.47628 * 120.00113 * 2 1 3 5 5 C 1.46898 * 110.99722 * 306.04921 * 4 2 1 6 6 C 1.46902 * 110.99598 * 69.99818 * 4 2 1 7 7 C 1.53002 * 109.46673 * 170.00524 * 6 4 2 8 8 H 1.09004 * 109.58841 * 50.91514 * 7 6 4 9 9 C 1.53195 * 109.70228 * 171.27101 * 7 6 4 10 10 C 1.53044 * 109.31214 * 174.49017 * 9 7 6 11 11 C 1.53039 * 109.53702 * 298.63449 * 10 9 7 12 12 C 1.52761 * 109.38336 * 61.24176 * 11 10 9 13 13 N 1.46924 * 109.00727 * 305.58656 * 12 11 10 14 14 C 1.34782 * 120.63122 * 233.58191 * 13 12 11 15 15 O 1.21281 * 120.00119 * 173.74700 * 14 13 12 16 16 C 1.50696 * 119.99642 * 353.75432 * 14 13 12 17 17 S 1.81007 * 109.47124 * 179.97438 * 16 14 13 18 18 C 1.76197 * 100.00018 * 179.97438 * 17 16 14 19 19 H 1.08003 * 120.00318 * 0.02562 * 18 17 16 20 20 C 1.38798 * 119.99807 * 180.02562 * 18 17 16 21 21 N 1.31632 * 120.00340 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99986 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47355 * 179.97438 * 22 20 18 24 24 H 1.48503 * 109.47362 * 59.99785 * 22 20 18 25 25 H 1.48498 * 109.47369 * 299.99860 * 22 20 18 26 26 H 1.08995 * 109.47065 * 299.99803 * 1 2 3 27 27 H 1.08998 * 109.47356 * 59.99809 * 1 2 3 28 28 H 1.08998 * 109.46992 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.47421 * 240.00545 * 2 1 3 30 30 H 1.09005 * 109.46865 * 180.02562 * 3 2 1 31 31 H 1.08996 * 109.47082 * 299.99746 * 3 2 1 32 32 H 1.08995 * 109.47054 * 60.00190 * 3 2 1 33 33 H 1.08998 * 109.47161 * 183.94881 * 5 4 2 34 34 H 1.08996 * 109.47128 * 303.95211 * 5 4 2 35 35 H 1.08999 * 109.47288 * 63.94736 * 5 4 2 36 36 H 1.08994 * 109.47111 * 50.00893 * 6 4 2 37 37 H 1.09000 * 109.47403 * 290.00281 * 6 4 2 38 38 H 1.08992 * 109.49581 * 294.44143 * 9 7 6 39 39 H 1.09002 * 109.49422 * 54.54236 * 9 7 6 40 40 H 1.09003 * 109.45555 * 58.65426 * 10 9 7 41 41 H 1.08993 * 109.46005 * 178.61551 * 10 9 7 42 42 H 1.09001 * 109.49603 * 181.31533 * 11 10 9 43 43 H 1.08991 * 109.49837 * 301.38071 * 11 10 9 44 44 H 1.09003 * 109.51221 * 185.70461 * 12 11 10 45 45 H 1.09005 * 109.43462 * 65.42045 * 12 11 10 46 46 H 1.08999 * 109.47469 * 59.99817 * 16 14 13 47 47 H 1.09002 * 109.47771 * 299.99571 * 16 14 13 48 48 H 0.97001 * 119.99392 * 0.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 1.4343 -0.1149 2.4166 6 6 1.7529 -2.1349 1.1202 7 6 2.4885 -2.8525 2.2538 8 1 2.2625 -2.3651 3.2022 9 6 2.0452 -4.3178 2.3109 10 6 2.8837 -5.0599 3.3542 11 6 4.3591 -5.0170 2.9498 12 6 4.8281 -3.5642 2.8965 13 7 3.9364 -2.8057 2.0086 14 6 4.4367 -2.0851 0.9854 15 8 3.6868 -1.5561 0.1925 16 6 5.9279 -1.9369 0.8264 17 16 6.2815 -0.9216 -0.6298 18 6 8.0426 -0.9125 -0.5761 19 1 8.5618 -1.4419 0.2092 20 6 8.7628 -0.2249 -1.5430 21 7 8.1302 0.4200 -2.5005 22 14 10.6299 -0.2157 -1.4865 23 1 11.1557 0.5831 -2.6226 24 1 11.1351 -1.6087 -1.5859 25 1 11.0836 0.3851 -0.2065 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.8664 -0.5988 3.2925 34 1 1.6466 0.9536 2.4501 35 1 0.3556 -0.2710 2.4104 36 1 2.1026 -2.5169 0.1611 37 1 0.6814 -2.3119 1.2131 38 1 0.9922 -4.3687 2.5873 39 1 2.1883 -4.7795 1.3339 40 1 2.7596 -4.5824 4.3262 41 1 2.5537 -6.0969 3.4144 42 1 4.9528 -5.5657 3.6810 43 1 4.4803 -5.4727 1.9671 44 1 5.8472 -3.5245 2.5116 45 1 4.7968 -3.1360 3.8984 46 1 6.3796 -2.9210 0.7011 47 1 6.3421 -1.4574 1.7133 48 1 7.1607 0.4149 -2.5300 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157572820.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:48:26 Heat of formation + Delta-G solvation = -25.394051 kcal Electronic energy + Delta-G solvation = -26100.446444 eV Core-core repulsion = 22702.899647 eV Total energy + Delta-G solvation = -3397.546797 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.177 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.54783 -38.94008 -38.14114 -34.71522 -34.19857 -33.70686 -31.47879 -30.43228 -28.45674 -27.82026 -27.03802 -26.30896 -24.85226 -22.85960 -21.78952 -20.60895 -20.44683 -19.63742 -17.85990 -17.31375 -17.01881 -16.37950 -16.31798 -15.83826 -15.70917 -15.47952 -15.15984 -15.04548 -14.71943 -14.52648 -14.36416 -14.23935 -13.95370 -13.79052 -13.59242 -13.36286 -13.30166 -12.88228 -12.85505 -12.72909 -12.49887 -12.30031 -12.07611 -11.96176 -11.94580 -11.75625 -11.57954 -11.52086 -11.46614 -11.33263 -11.07227 -10.23555 -9.88923 -9.39369 -8.89502 -8.76941 -8.75221 -6.21192 1.31302 1.52743 1.59847 1.80345 1.89061 2.23301 2.37106 3.04804 3.12662 3.17531 3.63874 3.88407 3.95216 4.03674 4.06582 4.18400 4.19207 4.24457 4.26201 4.29992 4.39976 4.42106 4.45634 4.50980 4.65116 4.71630 4.72223 4.73176 4.81512 4.86873 4.94130 4.97392 5.02013 5.07433 5.09599 5.12614 5.19876 5.24548 5.35161 5.46307 5.47651 5.65803 5.80175 6.18482 6.39451 6.50895 6.55030 7.09574 7.51588 8.54083 Molecular weight = 314.18amu Principal moments of inertia in cm(-1) A = 0.012869 B = 0.004680 C = 0.003603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2175.168122 B = 5980.905267 C = 7769.156472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.095 3.905 3 C -0.131 4.131 4 N -0.518 5.518 5 C 0.014 3.986 6 C 0.074 3.926 7 C 0.154 3.846 8 H 0.079 0.921 9 C -0.126 4.126 10 C -0.111 4.111 11 C -0.131 4.131 12 C 0.102 3.898 13 N -0.605 5.605 14 C 0.525 3.475 15 O -0.493 6.493 16 C -0.103 4.103 17 S -0.178 6.178 18 C -0.617 4.617 19 H 0.067 0.933 20 C -0.017 4.017 21 N -0.913 5.913 22 Si 1.133 2.867 23 H -0.279 1.279 24 H -0.264 1.264 25 H -0.265 1.265 26 H 0.066 0.934 27 H 0.062 0.938 28 H 0.053 0.947 29 H 0.052 0.948 30 H 0.029 0.971 31 H 0.059 0.941 32 H 0.061 0.939 33 H 0.064 0.936 34 H 0.059 0.941 35 H 0.035 0.965 36 H 0.065 0.935 37 H 0.036 0.964 38 H 0.090 0.910 39 H 0.053 0.947 40 H 0.075 0.925 41 H 0.080 0.920 42 H 0.095 0.905 43 H 0.052 0.948 44 H 0.075 0.925 45 H 0.080 0.920 46 H 0.091 0.909 47 H 0.088 0.912 48 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.752 -9.888 15.556 23.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.014 4.014 3 C -0.189 4.189 4 N -0.242 5.242 5 C -0.134 4.134 6 C -0.053 4.053 7 C 0.051 3.949 8 H 0.097 0.903 9 C -0.164 4.164 10 C -0.149 4.149 11 C -0.169 4.169 12 C -0.020 4.020 13 N -0.342 5.342 14 C 0.311 3.689 15 O -0.366 6.366 16 C -0.254 4.254 17 S 0.049 5.951 18 C -0.764 4.764 19 H 0.085 0.915 20 C -0.220 4.220 21 N -0.549 5.549 22 Si 0.951 3.049 23 H -0.204 1.204 24 H -0.189 1.189 25 H -0.190 1.190 26 H 0.084 0.916 27 H 0.081 0.919 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.048 0.952 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.078 0.922 35 H 0.054 0.946 36 H 0.084 0.916 37 H 0.053 0.947 38 H 0.109 0.891 39 H 0.071 0.929 40 H 0.094 0.906 41 H 0.098 0.902 42 H 0.114 0.886 43 H 0.071 0.929 44 H 0.093 0.907 45 H 0.099 0.901 46 H 0.109 0.891 47 H 0.107 0.893 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -14.043 -8.464 13.627 21.320 hybrid contribution -1.027 -1.036 1.250 1.921 sum -15.070 -9.500 14.878 23.210 Atomic orbital electron populations 1.22389 0.96490 1.01724 1.02625 1.21352 0.92431 0.94518 0.93060 1.21695 1.00152 0.95660 1.01387 1.62371 1.57798 1.02541 1.01537 1.22548 0.97272 1.00206 0.93375 1.22139 0.95827 0.88280 0.99094 1.21380 0.78960 0.96276 0.98267 0.90286 1.21934 1.00957 0.93450 1.00098 1.21473 0.93764 1.01167 0.98470 1.21833 0.97709 0.95046 1.02327 1.21802 0.93550 0.92270 0.94401 1.47841 1.07178 1.49043 1.30098 1.19653 0.88405 0.78897 0.81974 1.90732 1.57912 1.45786 1.42147 1.23257 0.97779 1.02964 1.01443 1.84850 1.07666 1.67661 1.34922 1.24063 0.91606 1.41723 1.19034 0.91473 1.27734 1.11993 0.91356 0.90936 1.70917 1.10550 1.40389 1.33008 0.82760 0.67087 0.77827 0.77211 1.20399 1.18920 1.18988 0.91554 0.91936 0.92810 0.92960 0.95201 0.92227 0.92001 0.91707 0.92242 0.94635 0.91641 0.94656 0.89144 0.92863 0.90601 0.90168 0.88615 0.92893 0.90662 0.90133 0.89090 0.89322 0.92869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.03 8.44 71.98 0.61 -3.42 16 2 C 0.09 2.92 2.23 44.91 0.10 3.02 16 3 C -0.13 -4.15 9.12 71.98 0.66 -3.49 16 4 N -0.52 -15.47 2.48 -897.06 -2.22 -17.69 16 5 C 0.01 0.33 8.45 127.69 1.08 1.41 16 6 C 0.07 2.00 3.19 86.30 0.28 2.28 16 7 C 0.15 3.47 2.91 44.98 0.13 3.60 16 8 H 0.08 1.63 6.19 -2.38 -0.01 1.61 16 9 C -0.13 -2.11 5.37 30.67 0.16 -1.95 16 10 C -0.11 -1.46 5.89 30.62 0.18 -1.28 16 11 C -0.13 -2.07 6.06 30.53 0.19 -1.88 16 12 C 0.10 2.13 6.29 86.22 0.54 2.67 16 13 N -0.61 -16.48 2.98 -795.83 -2.37 -18.85 16 14 C 0.53 19.61 7.40 87.65 0.65 20.25 16 15 O -0.49 -20.75 8.57 -3.03 -0.03 -20.77 16 16 C -0.10 -4.32 4.58 71.23 0.33 -3.99 16 17 S -0.18 -9.92 19.60 -56.49 -1.11 -11.03 16 18 C -0.62 -36.48 9.50 67.95 0.65 -35.84 16 19 H 0.07 3.78 7.80 -2.91 -0.02 3.76 16 20 C -0.02 -1.00 5.49 84.86 0.47 -0.54 16 21 N -0.91 -58.78 13.67 21.65 0.30 -58.49 16 22 Si 1.13 50.40 29.92 68.60 2.05 52.45 16 23 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 24 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 25 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 26 H 0.07 1.37 6.42 -2.39 -0.02 1.36 16 27 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.05 1.20 6.91 -2.39 -0.02 1.18 16 29 H 0.05 1.98 7.17 -2.38 -0.02 1.96 16 30 H 0.03 1.17 8.14 -2.38 -0.02 1.15 16 31 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.06 1.70 6.47 -2.39 -0.02 1.68 16 33 H 0.06 1.43 6.30 -2.39 -0.02 1.42 16 34 H 0.06 1.47 6.30 -2.39 -0.02 1.45 16 35 H 0.04 0.72 6.46 -2.39 -0.02 0.70 16 36 H 0.07 2.22 6.10 -2.39 -0.01 2.21 16 37 H 0.04 0.82 7.05 -2.39 -0.02 0.80 16 38 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.05 1.07 8.14 -2.39 -0.02 1.06 16 40 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 42 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 43 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 44 H 0.07 1.72 5.97 -2.39 -0.01 1.71 16 45 H 0.08 1.41 8.14 -2.38 -0.02 1.39 16 46 H 0.09 3.62 7.43 -2.40 -0.02 3.60 16 47 H 0.09 3.60 8.13 -2.39 -0.02 3.58 16 48 H 0.26 17.41 7.12 -92.71 -0.66 16.75 16 Total: -1.00 -73.70 366.71 3.67 -70.04 By element: Atomic # 1 Polarization: 22.47 SS G_CDS: 1.04 Total: 23.51 kcal Atomic # 6 Polarization: -25.18 SS G_CDS: 6.01 Total: -19.17 kcal Atomic # 7 Polarization: -90.73 SS G_CDS: -4.30 Total: -95.02 kcal Atomic # 8 Polarization: -20.75 SS G_CDS: -0.03 Total: -20.77 kcal Atomic # 14 Polarization: 50.40 SS G_CDS: 2.05 Total: 52.45 kcal Atomic # 16 Polarization: -9.92 SS G_CDS: -1.11 Total: -11.03 kcal Total: -73.70 3.67 -70.04 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157572820.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.643 kcal (2) G-P(sol) polarization free energy of solvation -73.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds