Wall clock time and date at job start Tue Mar 31 2020 10:49:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52999 * 109.46653 * 2 1 4 4 N 1.46900 * 109.47051 * 179.97438 * 3 2 1 5 5 C 1.46902 * 110.99970 * 179.97438 * 4 3 2 6 6 C 1.52999 * 109.46660 * 179.97438 * 5 4 3 7 7 H 1.09004 * 109.46196 * 55.03533 * 6 5 4 8 8 C 1.53035 * 109.45384 * 295.06284 * 6 5 4 9 9 C 1.53191 * 109.31508 * 178.62632 * 8 6 5 10 10 N 1.46928 * 108.77779 * 54.63147 * 9 8 6 11 11 C 1.34772 * 120.62713 * 126.41584 * 10 9 8 12 12 O 1.21284 * 120.00170 * 180.02562 * 11 10 9 13 13 C 1.50701 * 120.00224 * 359.97438 * 11 10 9 14 14 S 1.81000 * 109.47244 * 179.97438 * 13 11 10 15 15 C 1.76200 * 100.00039 * 180.02562 * 14 13 11 16 16 H 1.07995 * 119.99938 * 0.02562 * 15 14 13 17 17 C 1.38800 * 119.99667 * 180.02562 * 15 14 13 18 18 N 1.31623 * 120.00187 * 0.02562 * 17 15 14 19 19 Si 1.86810 * 119.99567 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47115 * 59.99912 * 19 17 15 21 21 H 1.48499 * 109.46674 * 180.02562 * 19 17 15 22 22 H 1.48492 * 109.46933 * 299.99729 * 19 17 15 23 23 C 1.46992 * 118.75388 * 306.39757 * 10 9 8 24 24 C 1.53044 * 109.45653 * 175.00204 * 6 5 4 25 25 H 1.09002 * 109.50098 * 301.35401 * 24 6 5 26 26 C 1.52997 * 109.49922 * 61.42175 * 24 6 5 27 27 H 1.08998 * 109.47143 * 299.99899 * 1 2 3 28 28 H 1.08993 * 109.47092 * 60.00313 * 1 2 3 29 29 H 1.09005 * 109.46426 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47143 * 240.00100 * 2 1 3 31 31 H 1.08993 * 109.47092 * 119.99686 * 2 1 3 32 32 H 1.08994 * 109.47487 * 59.99713 * 3 2 1 33 33 H 1.09003 * 109.47085 * 299.99667 * 3 2 1 34 34 H 1.00897 * 110.99853 * 303.95654 * 4 3 2 35 35 H 1.08992 * 109.46861 * 60.00474 * 5 4 3 36 36 H 1.09003 * 109.47173 * 299.99648 * 5 4 3 37 37 H 1.09006 * 109.49332 * 298.57647 * 8 6 5 38 38 H 1.08998 * 109.49780 * 58.63677 * 8 6 5 39 39 H 1.08997 * 109.58579 * 174.42673 * 9 8 6 40 40 H 1.09007 * 109.58484 * 294.70291 * 9 8 6 41 41 H 1.09004 * 109.47546 * 300.00516 * 13 11 10 42 42 H 1.09005 * 109.47242 * 60.00083 * 13 11 10 43 43 H 0.97006 * 119.99941 * 180.02562 * 18 17 15 44 44 H 1.09000 * 109.57835 * 293.82029 * 23 10 9 45 45 H 1.09002 * 109.62350 * 173.38217 * 23 10 9 46 46 H 1.09002 * 109.47153 * 59.93378 * 26 24 6 47 47 H 1.09001 * 109.46832 * 299.93569 * 26 24 6 48 48 H 1.09004 * 109.47261 * 179.97438 * 26 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4426 0.0006 5 6 4.0353 2.8141 0.0000 6 6 5.5648 2.7733 0.0013 7 1 5.9128 2.1742 -0.8402 8 6 6.0568 2.1496 1.3093 9 6 7.5870 2.0789 1.2928 10 7 8.1198 3.4221 1.0268 11 6 9.0282 3.9766 1.8536 12 8 9.4600 5.0863 1.6235 13 6 9.5066 3.2182 3.0649 14 16 10.7141 4.2209 3.9664 15 6 11.0937 3.1240 5.2921 16 1 10.6123 2.1589 5.3492 17 6 12.0115 3.5003 6.2630 18 7 12.5978 4.6767 6.1937 19 14 12.4145 2.3371 7.6681 20 1 12.9693 1.0731 7.1206 21 1 13.4154 2.9708 8.5635 22 1 11.1788 2.0432 8.4372 23 6 7.6436 4.1497 -0.1584 24 6 6.1128 4.1966 -0.1250 25 1 5.7426 4.6488 -1.0452 26 6 5.6534 5.0290 1.0737 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0278 0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.6766 1.9564 0.8899 33 1 1.6766 1.9563 -0.8900 34 1 3.8702 0.9166 0.7822 35 1 3.6855 3.3379 0.8895 36 1 3.6862 3.3369 -0.8905 37 1 5.7300 2.7620 2.1499 38 1 5.6467 1.1448 1.4102 39 1 7.9471 1.7278 2.2598 40 1 7.9127 1.3929 0.5107 41 1 8.6590 2.9984 3.7142 42 1 9.9733 2.2853 2.7485 43 1 13.2395 4.9396 6.8720 44 1 7.9739 3.6345 -1.0604 45 1 8.0407 5.1648 -0.1487 46 1 6.0239 4.5766 1.9936 47 1 4.5642 5.0612 1.0976 48 1 6.0444 6.0426 0.9835 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001183948126.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:49:30 Heat of formation + Delta-G solvation = -56.864096 kcal Electronic energy + Delta-G solvation = -24302.365278 eV Core-core repulsion = 20903.453837 eV Total energy + Delta-G solvation = -3398.911440 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.177 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.32493 -38.22974 -36.64821 -34.21745 -32.93177 -32.42418 -31.35957 -29.43742 -27.84239 -26.44277 -25.46158 -24.82279 -23.39893 -22.09070 -21.68255 -19.98607 -18.40590 -17.69319 -16.77055 -16.49379 -15.63767 -15.48070 -15.43795 -15.13227 -14.80029 -14.66170 -14.19150 -13.93510 -13.82473 -13.53393 -13.39910 -13.10381 -12.84968 -12.58498 -12.54886 -12.37100 -12.07022 -11.93409 -11.76009 -11.57237 -11.46703 -11.22076 -11.07968 -11.03940 -11.03275 -10.80877 -10.76050 -10.46842 -10.43340 -9.80164 -9.29864 -9.05515 -8.76022 -8.43517 -8.21578 -6.49182 -6.20842 -3.91381 2.97681 3.09745 3.23491 3.26464 3.29478 3.61861 3.78245 4.20875 4.46780 4.50889 4.55026 4.65073 4.68248 4.89834 4.95652 5.02687 5.07640 5.11101 5.13932 5.14482 5.25945 5.29409 5.34320 5.38614 5.39766 5.53847 5.60033 5.63041 5.69171 5.71725 5.73330 5.77641 5.79570 5.80320 5.86544 5.90022 5.97726 6.06537 6.10838 6.13224 6.34154 6.68791 6.71406 7.03215 7.59291 7.62520 8.35443 8.61175 9.24161 10.86455 Molecular weight = 314.18amu Principal moments of inertia in cm(-1) A = 0.017719 B = 0.002602 C = 0.002348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.850597 B =10759.896906 C =11922.095028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.123 4.123 3 C 0.057 3.943 4 N -0.693 5.693 5 C 0.064 3.936 6 C -0.079 4.079 7 H 0.081 0.919 8 C -0.134 4.134 9 C 0.110 3.890 10 N -0.617 5.617 11 C 0.535 3.465 12 O -0.518 6.518 13 C -0.150 4.150 14 S -0.061 6.061 15 C -0.535 4.535 16 H 0.071 0.929 17 C 0.074 3.926 18 N -0.867 5.867 19 Si 0.918 3.082 20 H -0.274 1.274 21 H -0.283 1.283 22 H -0.274 1.274 23 C 0.118 3.882 24 C -0.099 4.099 25 H 0.079 0.921 26 C -0.148 4.148 27 H 0.052 0.948 28 H 0.054 0.946 29 H 0.056 0.944 30 H 0.070 0.930 31 H 0.060 0.940 32 H 0.027 0.973 33 H 0.070 0.930 34 H 0.340 0.660 35 H 0.033 0.967 36 H 0.071 0.929 37 H 0.070 0.930 38 H 0.073 0.927 39 H 0.088 0.912 40 H 0.067 0.933 41 H 0.087 0.913 42 H 0.088 0.912 43 H 0.269 0.731 44 H 0.063 0.937 45 H 0.093 0.907 46 H 0.060 0.940 47 H 0.051 0.949 48 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.816 -8.091 -13.902 27.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.161 4.161 3 C -0.072 4.072 4 N -0.324 5.324 5 C -0.065 4.065 6 C -0.098 4.098 7 H 0.099 0.901 8 C -0.173 4.173 9 C -0.014 4.014 10 N -0.353 5.353 11 C 0.323 3.677 12 O -0.393 6.393 13 C -0.301 4.301 14 S 0.166 5.834 15 C -0.684 4.684 16 H 0.090 0.910 17 C -0.136 4.136 18 N -0.503 5.503 19 Si 0.744 3.256 20 H -0.199 1.199 21 H -0.208 1.208 22 H -0.200 1.200 23 C -0.005 4.005 24 C -0.118 4.118 25 H 0.097 0.903 26 C -0.205 4.205 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.089 0.911 31 H 0.079 0.921 32 H 0.046 0.954 33 H 0.088 0.912 34 H 0.159 0.841 35 H 0.051 0.949 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.091 0.909 39 H 0.107 0.893 40 H 0.085 0.915 41 H 0.106 0.894 42 H 0.106 0.894 43 H 0.079 0.921 44 H 0.081 0.919 45 H 0.112 0.888 46 H 0.079 0.921 47 H 0.070 0.930 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -20.983 -6.372 -14.835 26.476 hybrid contribution -0.515 -1.844 2.104 2.844 sum -21.498 -8.216 -12.732 26.301 Atomic orbital electron populations 1.21734 0.95584 1.01826 1.01806 1.21509 0.95598 0.96398 1.02629 1.21996 0.87754 0.96984 1.00447 1.60514 1.07213 1.14499 1.50205 1.22045 0.94621 0.89229 1.00632 1.21150 0.93946 0.96237 0.98462 0.90073 1.22051 0.95789 1.01205 0.98228 1.21664 0.93315 0.83906 1.02481 1.48063 1.43315 1.17514 1.26397 1.20298 0.77889 0.86244 0.83276 1.90685 1.55820 1.19566 1.73200 1.23550 1.04744 1.03964 0.97812 1.85399 1.48237 1.23008 1.26801 1.22815 1.29704 1.04457 1.11378 0.91039 1.24990 0.95058 0.95708 0.97827 1.70008 1.26485 1.19188 1.34577 0.86233 0.78259 0.80279 0.80784 1.19928 1.20814 1.19970 1.21559 0.92821 0.98818 0.87294 1.21482 0.95530 0.95334 0.99500 0.90252 1.21884 1.00287 0.99928 0.98408 0.92842 0.92650 0.92502 0.91096 0.92145 0.95435 0.91159 0.84066 0.94850 0.91097 0.91120 0.90879 0.89344 0.91480 0.89427 0.89358 0.92143 0.91913 0.88848 0.92070 0.92957 0.92513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.80 9.91 37.16 0.37 -0.43 16 2 C -0.12 -0.75 6.19 -26.73 -0.17 -0.91 16 3 C 0.06 0.39 5.69 -3.82 -0.02 0.37 16 4 N -0.69 -5.21 6.50 -113.78 -0.74 -5.95 16 5 C 0.06 0.49 4.68 -3.82 -0.02 0.48 16 6 C -0.08 -0.66 2.13 -90.58 -0.19 -0.85 16 7 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 8 C -0.13 -1.19 4.82 -26.61 -0.13 -1.32 16 9 C 0.11 1.19 6.34 -3.71 -0.02 1.17 16 10 N -0.62 -8.69 2.41 -172.71 -0.42 -9.11 16 11 C 0.53 10.22 7.72 -10.99 -0.08 10.13 16 12 O -0.52 -11.91 15.28 5.55 0.08 -11.83 16 13 C -0.15 -3.07 4.50 36.01 0.16 -2.91 16 14 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 15 C -0.54 -15.26 9.50 30.94 0.29 -14.97 16 16 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 17 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 18 N -0.87 -26.22 13.22 55.49 0.73 -25.49 16 19 Si 0.92 21.41 29.55 -169.99 -5.02 16.39 16 20 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 21 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 22 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 23 C 0.12 1.43 5.83 -3.68 -0.02 1.41 16 24 C -0.10 -0.94 2.72 -90.50 -0.25 -1.19 16 25 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 26 C -0.15 -1.60 8.38 37.16 0.31 -1.28 16 27 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 28 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 29 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.03 0.19 8.14 -51.93 -0.42 -0.23 16 33 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.34 2.41 6.95 -39.29 -0.27 2.13 16 35 H 0.03 0.28 6.74 -51.93 -0.35 -0.07 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.07 0.71 6.33 -51.93 -0.33 0.38 16 38 H 0.07 0.53 6.62 -51.93 -0.34 0.19 16 39 H 0.09 1.00 5.93 -51.93 -0.31 0.69 16 40 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.09 1.66 7.69 -51.91 -0.40 1.26 16 42 H 0.09 1.68 7.94 -51.91 -0.41 1.27 16 43 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 44 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 45 H 0.09 1.33 7.01 -51.93 -0.36 0.97 16 46 H 0.06 0.77 5.97 -51.93 -0.31 0.46 16 47 H 0.05 0.48 6.58 -51.93 -0.34 0.14 16 48 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 LS Contribution 382.49 15.07 5.76 5.76 Total: -1.00 -33.08 382.49 -10.14 -43.23 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: -8.47 Total: -0.83 kcal Atomic # 6 Polarization: -8.43 SS G_CDS: 0.14 Total: -8.29 kcal Atomic # 7 Polarization: -40.12 SS G_CDS: -0.42 Total: -40.54 kcal Atomic # 8 Polarization: -11.91 SS G_CDS: 0.08 Total: -11.83 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.08 -10.14 -43.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183948126.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.637 kcal (2) G-P(sol) polarization free energy of solvation -33.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds