Wall clock time and date at job start Tue Mar 31 2020 10:49:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52999 * 109.46653 * 2 1 4 4 N 1.46900 * 109.47051 * 179.97438 * 3 2 1 5 5 C 1.46902 * 110.99970 * 179.97438 * 4 3 2 6 6 C 1.52999 * 109.46660 * 179.97438 * 5 4 3 7 7 H 1.09004 * 109.46196 * 55.03533 * 6 5 4 8 8 C 1.53035 * 109.45384 * 295.06284 * 6 5 4 9 9 C 1.53191 * 109.31508 * 178.62632 * 8 6 5 10 10 N 1.46928 * 108.77779 * 54.63147 * 9 8 6 11 11 C 1.34772 * 120.62713 * 126.41584 * 10 9 8 12 12 O 1.21284 * 120.00170 * 180.02562 * 11 10 9 13 13 C 1.50701 * 120.00224 * 359.97438 * 11 10 9 14 14 S 1.81000 * 109.47244 * 179.97438 * 13 11 10 15 15 C 1.76200 * 100.00039 * 180.02562 * 14 13 11 16 16 H 1.07995 * 119.99938 * 0.02562 * 15 14 13 17 17 C 1.38800 * 119.99667 * 180.02562 * 15 14 13 18 18 N 1.31623 * 120.00187 * 0.02562 * 17 15 14 19 19 Si 1.86810 * 119.99567 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47115 * 59.99912 * 19 17 15 21 21 H 1.48499 * 109.46674 * 180.02562 * 19 17 15 22 22 H 1.48492 * 109.46933 * 299.99729 * 19 17 15 23 23 C 1.46992 * 118.75388 * 306.39757 * 10 9 8 24 24 C 1.53044 * 109.45653 * 175.00204 * 6 5 4 25 25 H 1.09002 * 109.50098 * 301.35401 * 24 6 5 26 26 C 1.52997 * 109.49922 * 61.42175 * 24 6 5 27 27 H 1.08998 * 109.47143 * 299.99899 * 1 2 3 28 28 H 1.08993 * 109.47092 * 60.00313 * 1 2 3 29 29 H 1.09005 * 109.46426 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47143 * 240.00100 * 2 1 3 31 31 H 1.08993 * 109.47092 * 119.99686 * 2 1 3 32 32 H 1.08994 * 109.47487 * 59.99713 * 3 2 1 33 33 H 1.09003 * 109.47085 * 299.99667 * 3 2 1 34 34 H 1.00897 * 110.99853 * 303.95654 * 4 3 2 35 35 H 1.08992 * 109.46861 * 60.00474 * 5 4 3 36 36 H 1.09003 * 109.47173 * 299.99648 * 5 4 3 37 37 H 1.09006 * 109.49332 * 298.57647 * 8 6 5 38 38 H 1.08998 * 109.49780 * 58.63677 * 8 6 5 39 39 H 1.08997 * 109.58579 * 174.42673 * 9 8 6 40 40 H 1.09007 * 109.58484 * 294.70291 * 9 8 6 41 41 H 1.09004 * 109.47546 * 300.00516 * 13 11 10 42 42 H 1.09005 * 109.47242 * 60.00083 * 13 11 10 43 43 H 0.97006 * 119.99941 * 180.02562 * 18 17 15 44 44 H 1.09000 * 109.57835 * 293.82029 * 23 10 9 45 45 H 1.09002 * 109.62350 * 173.38217 * 23 10 9 46 46 H 1.09002 * 109.47153 * 59.93378 * 26 24 6 47 47 H 1.09001 * 109.46832 * 299.93569 * 26 24 6 48 48 H 1.09004 * 109.47261 * 179.97438 * 26 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4426 0.0006 5 6 4.0353 2.8141 0.0000 6 6 5.5648 2.7733 0.0013 7 1 5.9128 2.1742 -0.8402 8 6 6.0568 2.1496 1.3093 9 6 7.5870 2.0789 1.2928 10 7 8.1198 3.4221 1.0268 11 6 9.0282 3.9766 1.8536 12 8 9.4600 5.0863 1.6235 13 6 9.5066 3.2182 3.0649 14 16 10.7141 4.2209 3.9664 15 6 11.0937 3.1240 5.2921 16 1 10.6123 2.1589 5.3492 17 6 12.0115 3.5003 6.2630 18 7 12.5978 4.6767 6.1937 19 14 12.4145 2.3371 7.6681 20 1 12.9693 1.0731 7.1206 21 1 13.4154 2.9708 8.5635 22 1 11.1788 2.0432 8.4372 23 6 7.6436 4.1497 -0.1584 24 6 6.1128 4.1966 -0.1250 25 1 5.7426 4.6488 -1.0452 26 6 5.6534 5.0290 1.0737 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0278 0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.6766 1.9564 0.8899 33 1 1.6766 1.9563 -0.8900 34 1 3.8702 0.9166 0.7822 35 1 3.6855 3.3379 0.8895 36 1 3.6862 3.3369 -0.8905 37 1 5.7300 2.7620 2.1499 38 1 5.6467 1.1448 1.4102 39 1 7.9471 1.7278 2.2598 40 1 7.9127 1.3929 0.5107 41 1 8.6590 2.9984 3.7142 42 1 9.9733 2.2853 2.7485 43 1 13.2395 4.9396 6.8720 44 1 7.9739 3.6345 -1.0604 45 1 8.0407 5.1648 -0.1487 46 1 6.0239 4.5766 1.9936 47 1 4.5642 5.0612 1.0976 48 1 6.0444 6.0426 0.9835 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001183948126.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:49:29 Heat of formation + Delta-G solvation = -77.712594 kcal Electronic energy + Delta-G solvation = -24303.269336 eV Core-core repulsion = 20903.453837 eV Total energy + Delta-G solvation = -3399.815499 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.177 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.43557 -39.35326 -37.40519 -35.18945 -34.58850 -33.68830 -32.15151 -30.94623 -28.57061 -27.80499 -27.28352 -25.50130 -24.27227 -22.89039 -22.18900 -21.19104 -19.80044 -19.17363 -18.15129 -17.18830 -16.91548 -16.85942 -16.64280 -16.27081 -15.78542 -15.70441 -15.52820 -14.99619 -14.79903 -14.48468 -14.38250 -14.28385 -14.04675 -13.76108 -13.47776 -13.22692 -13.15767 -13.00325 -12.87068 -12.71390 -12.67060 -12.57506 -12.39613 -12.01411 -11.97743 -11.73147 -11.62324 -11.53085 -11.30794 -11.21839 -11.13271 -10.78767 -10.26722 -9.62574 -9.31805 -8.67889 -8.34628 -6.13288 1.25549 1.43613 1.45702 1.55428 1.59679 2.13566 2.27455 2.99169 3.19283 3.25624 3.61810 3.73431 3.83312 3.96050 4.06678 4.10150 4.19283 4.23689 4.24863 4.34636 4.43974 4.46036 4.51958 4.59363 4.63024 4.71994 4.74021 4.81618 4.84344 4.85389 4.90325 4.94561 4.95317 5.05028 5.16679 5.21113 5.22000 5.26802 5.32877 5.40797 5.42414 5.52664 5.64522 6.11673 6.19107 6.32924 6.49545 7.06122 7.17305 8.74301 Molecular weight = 314.18amu Principal moments of inertia in cm(-1) A = 0.017719 B = 0.002602 C = 0.002348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.850597 B =10759.896906 C =11922.095028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.120 4.120 3 C 0.058 3.942 4 N -0.695 5.695 5 C 0.070 3.930 6 C -0.070 4.070 7 H 0.089 0.911 8 C -0.128 4.128 9 C 0.101 3.899 10 N -0.602 5.602 11 C 0.532 3.468 12 O -0.569 6.569 13 C -0.123 4.123 14 S -0.153 6.153 15 C -0.546 4.546 16 H 0.083 0.917 17 C 0.012 3.988 18 N -0.911 5.911 19 Si 0.999 3.001 20 H -0.261 1.261 21 H -0.279 1.279 22 H -0.262 1.262 23 C 0.113 3.887 24 C -0.090 4.090 25 H 0.100 0.900 26 C -0.145 4.145 27 H 0.053 0.947 28 H 0.056 0.944 29 H 0.060 0.940 30 H 0.066 0.934 31 H 0.061 0.939 32 H 0.025 0.975 33 H 0.069 0.931 34 H 0.344 0.656 35 H 0.028 0.972 36 H 0.074 0.926 37 H 0.058 0.942 38 H 0.096 0.904 39 H 0.085 0.915 40 H 0.090 0.910 41 H 0.104 0.896 42 H 0.106 0.894 43 H 0.271 0.729 44 H 0.085 0.915 45 H 0.066 0.934 46 H 0.039 0.961 47 H 0.070 0.930 48 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.717 -10.839 -14.399 29.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.158 4.158 3 C -0.071 4.071 4 N -0.327 5.327 5 C -0.059 4.059 6 C -0.089 4.089 7 H 0.107 0.893 8 C -0.166 4.166 9 C -0.021 4.021 10 N -0.336 5.336 11 C 0.320 3.680 12 O -0.448 6.448 13 C -0.274 4.274 14 S 0.075 5.925 15 C -0.694 4.694 16 H 0.101 0.899 17 C -0.192 4.192 18 N -0.547 5.547 19 Si 0.820 3.180 20 H -0.186 1.186 21 H -0.204 1.204 22 H -0.186 1.186 23 C -0.009 4.009 24 C -0.109 4.109 25 H 0.118 0.882 26 C -0.202 4.202 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.044 0.956 33 H 0.087 0.913 34 H 0.163 0.837 35 H 0.047 0.953 36 H 0.092 0.908 37 H 0.077 0.923 38 H 0.115 0.885 39 H 0.103 0.897 40 H 0.108 0.892 41 H 0.122 0.878 42 H 0.124 0.876 43 H 0.080 0.920 44 H 0.103 0.897 45 H 0.085 0.915 46 H 0.058 0.942 47 H 0.089 0.911 48 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -22.935 -9.162 -15.365 29.087 hybrid contribution -0.033 -1.012 2.137 2.365 sum -22.968 -10.174 -13.228 28.390 Atomic orbital electron populations 1.21728 0.95065 1.02170 1.01910 1.21472 0.96036 0.95836 1.02424 1.21998 0.87372 0.97413 1.00285 1.60524 1.07616 1.14213 1.50386 1.21949 0.93884 0.89492 1.00592 1.21064 0.94409 0.95045 0.98333 0.89305 1.22012 0.94036 1.02438 0.98127 1.21987 0.94755 0.82153 1.03190 1.48063 1.41312 1.18570 1.25607 1.20089 0.78787 0.85598 0.83545 1.90668 1.58099 1.21587 1.74410 1.23361 1.03062 1.03036 0.97906 1.85591 1.51552 1.26648 1.28757 1.23150 1.30016 1.04679 1.11507 0.89939 1.26148 0.94648 0.97540 1.00890 1.70181 1.27276 1.21470 1.35812 0.85000 0.78395 0.77840 0.76739 1.18571 1.20407 1.18624 1.21760 0.94656 0.97510 0.86978 1.21445 0.93360 0.96353 0.99785 0.88154 1.21852 1.01337 0.98991 0.98041 0.92831 0.92468 0.92068 0.91529 0.92062 0.95637 0.91266 0.83725 0.95336 0.90751 0.92285 0.88533 0.89674 0.89152 0.87785 0.87610 0.92001 0.89704 0.91502 0.94186 0.91144 0.94231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.91 71.98 0.71 -0.60 16 2 C -0.12 -1.21 6.19 30.60 0.19 -1.02 16 3 C 0.06 0.67 5.69 86.30 0.49 1.16 16 4 N -0.70 -8.46 6.50 -513.89 -3.34 -11.80 16 5 C 0.07 0.88 4.68 86.30 0.40 1.28 16 6 C -0.07 -0.95 2.13 -10.77 -0.02 -0.97 16 7 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 8 C -0.13 -1.90 4.82 30.67 0.15 -1.75 16 9 C 0.10 1.94 6.34 86.36 0.55 2.49 16 10 N -0.60 -16.34 2.41 -818.73 -1.97 -18.32 16 11 C 0.53 20.59 7.72 87.66 0.68 21.27 16 12 O -0.57 -27.32 15.28 -3.04 -0.05 -27.37 16 13 C -0.12 -5.02 4.50 71.24 0.32 -4.70 16 14 S -0.15 -8.64 20.57 -56.49 -1.16 -9.80 16 15 C -0.55 -31.40 9.50 67.95 0.65 -30.75 16 16 H 0.08 4.38 7.80 -2.91 -0.02 4.36 16 17 C 0.01 0.72 5.49 84.86 0.47 1.18 16 18 N -0.91 -56.40 13.22 21.65 0.29 -56.12 16 19 Si 1.00 43.68 29.55 68.60 2.03 45.71 16 20 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 21 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 22 H -0.26 -10.82 7.11 99.48 0.71 -10.12 16 23 C 0.11 2.62 5.83 86.35 0.50 3.12 16 24 C -0.09 -1.53 2.72 -10.72 -0.03 -1.56 16 25 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 26 C -0.14 -3.02 8.38 71.98 0.60 -2.42 16 27 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 28 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 29 H 0.06 0.48 8.14 -2.38 -0.02 0.46 16 30 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.03 0.31 8.14 -2.39 -0.02 0.29 16 33 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.34 3.78 6.95 -89.70 -0.62 3.16 16 35 H 0.03 0.40 6.74 -2.39 -0.02 0.38 16 36 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.06 1.06 6.33 -2.38 -0.02 1.04 16 38 H 0.10 1.04 6.62 -2.39 -0.02 1.03 16 39 H 0.08 1.72 5.93 -2.39 -0.01 1.70 16 40 H 0.09 1.40 8.14 -2.38 -0.02 1.38 16 41 H 0.10 3.89 7.69 -2.39 -0.02 3.87 16 42 H 0.11 3.93 7.94 -2.39 -0.02 3.91 16 43 H 0.27 15.59 8.31 -92.70 -0.77 14.82 16 44 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 45 H 0.07 1.95 7.01 -2.39 -0.02 1.93 16 46 H 0.04 1.00 5.97 -2.39 -0.01 0.98 16 47 H 0.07 1.19 6.58 -2.39 -0.02 1.18 16 48 H 0.04 0.95 8.14 -2.38 -0.02 0.93 16 Total: -1.00 -74.68 382.49 1.75 -72.93 By element: Atomic # 1 Polarization: 17.74 SS G_CDS: 0.31 Total: 18.04 kcal Atomic # 6 Polarization: -18.93 SS G_CDS: 5.66 Total: -13.28 kcal Atomic # 7 Polarization: -81.20 SS G_CDS: -5.03 Total: -86.23 kcal Atomic # 8 Polarization: -27.32 SS G_CDS: -0.05 Total: -27.37 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Atomic # 16 Polarization: -8.64 SS G_CDS: -1.16 Total: -9.80 kcal Total: -74.68 1.75 -72.93 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183948126.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.786 kcal (2) G-P(sol) polarization free energy of solvation -74.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds