Wall clock time and date at job start Tue Mar 31 2020 10:23:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50692 * 120.00486 * 2 1 4 4 H 1.09005 * 109.47013 * 359.97438 * 3 2 1 5 5 C 1.52997 * 109.47483 * 120.00259 * 3 2 1 6 6 C 1.50706 * 109.46970 * 294.99936 * 5 3 2 7 7 O 1.21287 * 119.99925 * 359.97438 * 6 5 3 8 8 N 1.34773 * 120.00081 * 180.02562 * 6 5 3 9 9 C 1.47019 * 125.64671 * 0.03963 * 8 6 5 10 10 C 1.54330 * 107.26866 * 181.02357 * 9 8 6 11 11 C 1.55157 * 102.94049 * 22.19588 * 10 9 8 12 12 H 1.09002 * 111.00633 * 82.57450 * 11 10 9 13 13 N 1.46496 * 110.99995 * 206.41920 * 11 10 9 14 14 C 1.36939 * 120.00545 * 273.54762 * 13 11 10 15 15 H 1.07996 * 119.99415 * 359.97438 * 14 13 11 16 16 C 1.38813 * 120.00247 * 180.02562 * 14 13 11 17 17 N 1.31615 * 120.00029 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 119.99856 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47211 * 59.99993 * 18 16 14 20 20 H 1.48498 * 109.47158 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47263 * 300.00215 * 18 16 14 22 22 C 1.47426 * 125.64953 * 180.02562 * 8 6 5 23 23 C 1.50706 * 109.47058 * 240.00181 * 3 2 1 24 24 C 1.38233 * 120.00034 * 299.72595 * 23 3 2 25 25 C 1.38233 * 119.99874 * 179.80999 * 24 23 3 26 26 C 1.38226 * 120.00223 * 0.41739 * 25 24 23 27 27 C 1.38237 * 120.00239 * 359.81529 * 26 25 24 28 28 C 1.38233 * 120.00083 * 119.99962 * 23 3 2 29 29 H 1.08003 * 119.99437 * 359.97438 * 1 2 3 30 30 H 1.07998 * 120.00647 * 180.02562 * 1 2 3 31 31 H 1.08003 * 119.99437 * 180.02562 * 2 1 3 32 32 H 1.09003 * 109.47022 * 175.00056 * 5 3 2 33 33 H 1.09001 * 109.47223 * 54.99621 * 5 3 2 34 34 H 1.09000 * 109.88042 * 61.60987 * 9 8 6 35 35 H 1.08996 * 109.88551 * 300.44128 * 9 8 6 36 36 H 1.08996 * 110.71860 * 263.82642 * 10 9 8 37 37 H 1.09002 * 110.71679 * 140.55640 * 10 9 8 38 38 H 0.97005 * 119.99908 * 93.54885 * 13 11 10 39 39 H 0.96995 * 120.00245 * 180.02562 * 17 16 14 40 40 H 1.09004 * 110.36498 * 37.06458 * 22 8 6 41 41 H 1.08999 * 110.36381 * 274.74720 * 22 8 6 42 42 H 1.08002 * 119.99812 * 359.97438 * 24 23 3 43 43 H 1.08001 * 119.99921 * 180.20639 * 25 24 23 44 44 H 1.07999 * 120.00448 * 179.78988 * 26 25 24 45 45 H 1.07996 * 120.00462 * 179.97438 * 27 26 25 46 46 H 1.08005 * 119.99946 * 359.97376 * 28 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 1 1.3553 2.1335 -0.0005 5 6 2.9433 1.3860 1.2492 6 6 2.0700 1.4300 2.4766 7 8 0.8628 1.4000 2.3633 8 7 2.6303 1.5037 3.7001 9 6 4.0728 1.5488 3.9805 10 6 4.2400 1.6033 5.5137 11 6 2.9004 1.0152 6.0304 12 1 2.9245 -0.0746 6.0256 13 7 2.5838 1.5253 7.3667 14 6 3.0829 0.8962 8.4759 15 1 3.7097 0.0237 8.3655 16 6 2.7824 1.3793 9.7421 17 7 2.0173 2.4417 9.8766 18 14 3.4628 0.5207 11.2550 19 1 4.9470 0.5366 11.2079 20 1 2.9982 1.2269 12.4759 21 1 2.9836 -0.8846 11.2842 22 6 1.8984 1.5527 4.9788 23 6 2.9300 1.3847 -1.2305 24 6 3.9128 0.4370 -1.4465 25 6 4.7049 0.5079 -2.5771 26 6 4.5199 1.5315 -3.4875 27 6 3.5403 2.4821 -3.2692 28 6 2.7457 2.4089 -2.1405 29 1 -0.5399 0.9354 0.0004 30 1 -0.5401 -0.9352 0.0004 31 1 1.8500 -0.9354 -0.0004 32 1 3.5543 2.2877 1.2054 33 1 3.5907 0.5103 1.2951 34 1 4.5107 2.4386 3.5280 35 1 4.5553 0.6544 3.5866 36 1 4.3655 2.6320 5.8516 37 1 5.0804 0.9864 5.8322 38 1 2.0205 2.3088 7.4658 39 1 1.8076 2.7796 10.7613 40 1 1.0155 0.9148 4.9353 41 1 1.6150 2.5784 5.2146 42 1 4.0601 -0.3605 -0.7331 43 1 5.4706 -0.2345 -2.7475 44 1 5.1410 1.5889 -4.3692 45 1 3.3960 3.2820 -3.9803 46 1 1.9804 3.1517 -1.9697 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001188009892.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:23:55 Heat of formation + Delta-G solvation = 20.528843 kcal Electronic energy + Delta-G solvation = -25258.519132 eV Core-core repulsion = 21727.519750 eV Total energy + Delta-G solvation = -3530.999382 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.22446 -39.35764 -37.46032 -35.56876 -34.13475 -31.79357 -31.36838 -31.14648 -29.92000 -29.45808 -27.64179 -24.97087 -23.47066 -22.93717 -22.61696 -21.55767 -20.11325 -19.70858 -18.80551 -17.47736 -17.31846 -16.60868 -16.10419 -15.66230 -15.29556 -15.13658 -14.66819 -14.34162 -14.15891 -13.70058 -13.66344 -13.52804 -13.21547 -13.15576 -12.91901 -12.63311 -12.36597 -12.17771 -11.82956 -11.77993 -11.60499 -11.47885 -11.17092 -11.11974 -10.85273 -10.79148 -10.69462 -10.33086 -10.08958 -9.80127 -9.73268 -9.17671 -9.15459 -8.97028 -8.92417 -8.36907 -7.06425 -5.83592 -3.14304 1.10010 1.16031 2.40138 2.83208 3.16294 3.40336 3.45169 3.46084 3.56489 4.41869 4.52654 4.53482 4.74541 4.77907 4.84241 4.89547 4.97115 5.05414 5.16199 5.25027 5.26830 5.30138 5.37538 5.42004 5.52855 5.57221 5.62222 5.72709 5.74862 5.76598 5.86651 5.95962 5.98067 6.13992 6.22364 6.24625 6.26974 6.37748 6.42248 6.55755 6.61145 6.65546 6.77036 6.86642 6.90546 7.63357 7.76876 8.33478 8.37070 9.45284 9.99489 10.34386 11.38569 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.027540 B = 0.002344 C = 0.002259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.461745 B =11942.435739 C =12390.664598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.153 4.153 3 C -0.003 4.003 4 H 0.089 0.911 5 C -0.124 4.124 6 C 0.525 3.475 7 O -0.538 6.538 8 N -0.615 5.615 9 C 0.101 3.899 10 C -0.155 4.155 11 C 0.172 3.828 12 H 0.062 0.938 13 N -0.715 5.715 14 C -0.245 4.245 15 H 0.071 0.929 16 C -0.010 4.010 17 N -0.930 5.930 18 Si 0.910 3.090 19 H -0.285 1.285 20 H -0.291 1.291 21 H -0.285 1.285 22 C 0.100 3.900 23 C -0.069 4.069 24 C -0.113 4.113 25 C -0.119 4.119 26 C -0.127 4.127 27 C -0.119 4.119 28 C -0.115 4.115 29 H 0.097 0.903 30 H 0.092 0.908 31 H 0.103 0.897 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.386 0.614 39 H 0.257 0.743 40 H 0.075 0.925 41 H 0.067 0.933 42 H 0.121 0.879 43 H 0.120 0.880 44 H 0.119 0.881 45 H 0.120 0.880 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.266 -1.977 -26.343 26.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.171 4.171 3 C -0.022 4.022 4 H 0.107 0.893 5 C -0.164 4.164 6 C 0.313 3.687 7 O -0.415 6.415 8 N -0.349 5.349 9 C -0.022 4.022 10 C -0.196 4.196 11 C 0.060 3.940 12 H 0.080 0.920 13 N -0.356 5.356 14 C -0.376 4.376 15 H 0.089 0.911 16 C -0.207 4.207 17 N -0.578 5.578 18 Si 0.740 3.260 19 H -0.212 1.212 20 H -0.217 1.217 21 H -0.212 1.212 22 C -0.023 4.023 23 C -0.069 4.069 24 C -0.131 4.131 25 C -0.137 4.137 26 C -0.145 4.145 27 C -0.137 4.137 28 C -0.133 4.133 29 H 0.115 0.885 30 H 0.111 0.889 31 H 0.121 0.879 32 H 0.112 0.888 33 H 0.111 0.889 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.094 0.906 37 H 0.092 0.908 38 H 0.221 0.779 39 H 0.067 0.933 40 H 0.093 0.907 41 H 0.085 0.915 42 H 0.139 0.861 43 H 0.138 0.862 44 H 0.137 0.863 45 H 0.138 0.862 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 4.639 -2.095 -26.309 26.797 hybrid contribution 0.411 -0.153 0.971 1.065 sum 5.050 -2.248 -25.338 25.934 Atomic orbital electron populations 1.23711 0.95805 1.01522 0.98327 1.22537 0.95949 0.96492 1.02083 1.19077 0.95236 0.97850 0.90004 0.89263 1.21663 0.98435 1.04426 0.91903 1.20183 0.88697 0.76513 0.83313 1.90704 1.14628 1.50187 1.85992 1.48493 1.08120 1.72514 1.05816 1.22091 0.81089 1.00605 0.98425 1.23412 1.01807 1.03041 0.91363 1.21287 0.90560 0.96760 0.85428 0.92010 1.42251 1.60048 1.34380 0.98883 1.19156 1.24990 1.08692 0.84721 0.91054 1.24775 1.00200 0.98098 0.97603 1.69648 1.40785 1.24739 1.22615 0.86240 0.78464 0.78740 0.82541 1.21177 1.21650 1.21177 1.22488 0.96086 1.01566 0.82141 1.19825 0.96048 0.95056 0.95964 1.21026 0.95570 0.98788 0.97695 1.21143 0.99523 0.98461 0.94580 1.21138 0.98564 0.95300 0.99495 1.21136 0.96014 0.99032 0.97521 1.21100 0.99720 0.98111 0.94367 0.88484 0.88945 0.87880 0.88837 0.88894 0.92102 0.91990 0.90563 0.90771 0.77942 0.93291 0.90653 0.91480 0.86077 0.86155 0.86312 0.86169 0.86047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.84 13.22 29.01 0.38 -1.45 16 2 C -0.15 -1.71 7.42 -36.03 -0.27 -1.97 16 3 C 0.00 -0.03 1.99 -92.93 -0.18 -0.22 16 4 H 0.09 1.03 7.33 -51.93 -0.38 0.65 16 5 C -0.12 -1.32 4.09 -27.88 -0.11 -1.44 16 6 C 0.52 7.70 7.60 -10.98 -0.08 7.61 16 7 O -0.54 -9.52 14.43 5.55 0.08 -9.44 16 8 N -0.61 -9.26 3.33 -170.53 -0.57 -9.83 16 9 C 0.10 1.30 6.49 -3.06 -0.02 1.28 16 10 C -0.15 -2.48 6.65 -24.89 -0.17 -2.65 16 11 C 0.17 3.29 3.68 -65.80 -0.24 3.04 16 12 H 0.06 1.21 8.13 -51.93 -0.42 0.79 16 13 N -0.72 -17.35 5.28 -51.37 -0.27 -17.62 16 14 C -0.24 -6.57 9.98 -15.06 -0.15 -6.72 16 15 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 16 C -0.01 -0.29 5.50 -17.43 -0.10 -0.38 16 17 N -0.93 -27.56 13.06 55.49 0.72 -26.84 16 18 Si 0.91 21.89 29.55 -169.99 -5.02 16.87 16 19 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 20 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 21 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 22 C 0.10 1.78 6.53 -2.54 -0.02 1.76 16 23 C -0.07 -0.65 4.77 -104.62 -0.50 -1.15 16 24 C -0.11 -0.97 8.87 -39.59 -0.35 -1.33 16 25 C -0.12 -0.94 10.05 -39.59 -0.40 -1.33 16 26 C -0.13 -0.97 10.05 -39.59 -0.40 -1.37 16 27 C -0.12 -0.95 10.05 -39.58 -0.40 -1.35 16 28 C -0.11 -1.03 9.67 -39.58 -0.38 -1.41 16 29 H 0.10 1.18 7.83 -52.48 -0.41 0.77 16 30 H 0.09 0.98 8.06 -52.49 -0.42 0.55 16 31 H 0.10 1.05 8.05 -52.48 -0.42 0.63 16 32 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 33 H 0.09 0.85 7.56 -51.93 -0.39 0.46 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 37 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 38 H 0.39 10.02 7.71 -40.82 -0.31 9.70 16 39 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 40 H 0.08 1.41 8.04 -51.93 -0.42 0.99 16 41 H 0.07 1.24 8.00 -51.93 -0.42 0.82 16 42 H 0.12 0.91 7.62 -52.49 -0.40 0.51 16 43 H 0.12 0.72 8.06 -52.49 -0.42 0.29 16 44 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 45 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 46 H 0.12 0.96 7.95 -52.48 -0.42 0.54 16 LS Contribution 380.84 15.07 5.74 5.74 Total: -1.00 -31.17 380.84 -10.04 -41.22 By element: Atomic # 1 Polarization: 16.31 SS G_CDS: -7.34 Total: 8.97 kcal Atomic # 6 Polarization: -5.68 SS G_CDS: -3.38 Total: -9.07 kcal Atomic # 7 Polarization: -54.17 SS G_CDS: -0.11 Total: -54.29 kcal Atomic # 8 Polarization: -9.52 SS G_CDS: 0.08 Total: -9.44 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -31.17 -10.04 -41.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188009892.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.747 kcal (2) G-P(sol) polarization free energy of solvation -31.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.218 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds