Wall clock time and date at job start Tue Mar 31 2020 10:23:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50692 * 120.00486 * 2 1 4 4 H 1.09005 * 109.47013 * 359.97438 * 3 2 1 5 5 C 1.52997 * 109.47483 * 120.00259 * 3 2 1 6 6 C 1.50706 * 109.46970 * 294.99936 * 5 3 2 7 7 O 1.21287 * 119.99925 * 359.97438 * 6 5 3 8 8 N 1.34773 * 120.00081 * 180.02562 * 6 5 3 9 9 C 1.47019 * 125.64671 * 0.03963 * 8 6 5 10 10 C 1.54330 * 107.26866 * 181.02357 * 9 8 6 11 11 C 1.55157 * 102.94049 * 22.19588 * 10 9 8 12 12 H 1.09002 * 111.00633 * 82.57450 * 11 10 9 13 13 N 1.46496 * 110.99995 * 206.41920 * 11 10 9 14 14 C 1.36939 * 120.00545 * 273.54762 * 13 11 10 15 15 H 1.07996 * 119.99415 * 359.97438 * 14 13 11 16 16 C 1.38813 * 120.00247 * 180.02562 * 14 13 11 17 17 N 1.31615 * 120.00029 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 119.99856 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47211 * 59.99993 * 18 16 14 20 20 H 1.48498 * 109.47158 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47263 * 300.00215 * 18 16 14 22 22 C 1.47426 * 125.64953 * 180.02562 * 8 6 5 23 23 C 1.50706 * 109.47058 * 240.00181 * 3 2 1 24 24 C 1.38233 * 120.00034 * 299.72595 * 23 3 2 25 25 C 1.38233 * 119.99874 * 179.80999 * 24 23 3 26 26 C 1.38226 * 120.00223 * 0.41739 * 25 24 23 27 27 C 1.38237 * 120.00239 * 359.81529 * 26 25 24 28 28 C 1.38233 * 120.00083 * 119.99962 * 23 3 2 29 29 H 1.08003 * 119.99437 * 359.97438 * 1 2 3 30 30 H 1.07998 * 120.00647 * 180.02562 * 1 2 3 31 31 H 1.08003 * 119.99437 * 180.02562 * 2 1 3 32 32 H 1.09003 * 109.47022 * 175.00056 * 5 3 2 33 33 H 1.09001 * 109.47223 * 54.99621 * 5 3 2 34 34 H 1.09000 * 109.88042 * 61.60987 * 9 8 6 35 35 H 1.08996 * 109.88551 * 300.44128 * 9 8 6 36 36 H 1.08996 * 110.71860 * 263.82642 * 10 9 8 37 37 H 1.09002 * 110.71679 * 140.55640 * 10 9 8 38 38 H 0.97005 * 119.99908 * 93.54885 * 13 11 10 39 39 H 0.96995 * 120.00245 * 180.02562 * 17 16 14 40 40 H 1.09004 * 110.36498 * 37.06458 * 22 8 6 41 41 H 1.08999 * 110.36381 * 274.74720 * 22 8 6 42 42 H 1.08002 * 119.99812 * 359.97438 * 24 23 3 43 43 H 1.08001 * 119.99921 * 180.20639 * 25 24 23 44 44 H 1.07999 * 120.00448 * 179.78988 * 26 25 24 45 45 H 1.07996 * 120.00462 * 179.97438 * 27 26 25 46 46 H 1.08005 * 119.99946 * 359.97376 * 28 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 1 1.3553 2.1335 -0.0005 5 6 2.9433 1.3860 1.2492 6 6 2.0700 1.4300 2.4766 7 8 0.8628 1.4000 2.3633 8 7 2.6303 1.5037 3.7001 9 6 4.0728 1.5488 3.9805 10 6 4.2400 1.6033 5.5137 11 6 2.9004 1.0152 6.0304 12 1 2.9245 -0.0746 6.0256 13 7 2.5838 1.5253 7.3667 14 6 3.0829 0.8962 8.4759 15 1 3.7097 0.0237 8.3655 16 6 2.7824 1.3793 9.7421 17 7 2.0173 2.4417 9.8766 18 14 3.4628 0.5207 11.2550 19 1 4.9470 0.5366 11.2079 20 1 2.9982 1.2269 12.4759 21 1 2.9836 -0.8846 11.2842 22 6 1.8984 1.5527 4.9788 23 6 2.9300 1.3847 -1.2305 24 6 3.9128 0.4370 -1.4465 25 6 4.7049 0.5079 -2.5771 26 6 4.5199 1.5315 -3.4875 27 6 3.5403 2.4821 -3.2692 28 6 2.7457 2.4089 -2.1405 29 1 -0.5399 0.9354 0.0004 30 1 -0.5401 -0.9352 0.0004 31 1 1.8500 -0.9354 -0.0004 32 1 3.5543 2.2877 1.2054 33 1 3.5907 0.5103 1.2951 34 1 4.5107 2.4386 3.5280 35 1 4.5553 0.6544 3.5866 36 1 4.3655 2.6320 5.8516 37 1 5.0804 0.9864 5.8322 38 1 2.0205 2.3088 7.4658 39 1 1.8076 2.7796 10.7613 40 1 1.0155 0.9148 4.9353 41 1 1.6150 2.5784 5.2146 42 1 4.0601 -0.3605 -0.7331 43 1 5.4706 -0.2345 -2.7475 44 1 5.1410 1.5889 -4.3692 45 1 3.3960 3.2820 -3.9803 46 1 1.9804 3.1517 -1.9697 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001188009892.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:23:54 Heat of formation + Delta-G solvation = 3.844073 kcal Electronic energy + Delta-G solvation = -25259.242638 eV Core-core repulsion = 21727.519750 eV Total energy + Delta-G solvation = -3531.722888 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.25962 -40.19470 -38.73690 -36.46522 -35.89350 -33.39458 -32.31478 -31.73678 -31.16021 -30.60544 -29.06521 -26.15905 -25.12564 -23.87966 -23.49274 -22.26738 -21.61634 -20.66156 -19.86480 -19.27517 -18.36911 -17.49309 -17.40604 -16.63514 -16.47985 -16.09011 -15.87260 -15.46812 -15.32562 -15.14652 -14.73635 -14.52097 -14.35570 -14.13038 -14.02078 -13.67191 -13.47726 -13.33383 -13.10171 -13.00672 -12.85339 -12.64300 -12.53251 -12.34713 -12.15917 -12.14128 -11.79754 -11.75929 -11.61462 -11.53244 -10.93211 -10.90588 -10.10952 -9.74925 -9.60712 -9.55504 -9.05122 -7.95035 -5.25424 0.48317 0.57087 1.49037 1.51540 1.51974 1.57882 1.69914 1.98347 2.57400 2.95019 3.35286 3.50564 3.72962 3.74134 3.89904 4.02534 4.03844 4.14805 4.21246 4.26936 4.28716 4.35052 4.35393 4.41170 4.50658 4.53252 4.66831 4.68737 4.76918 4.78067 4.86831 4.96799 5.01767 5.09484 5.16635 5.24453 5.25996 5.26204 5.43236 5.54014 5.64028 5.69909 5.76825 5.78081 5.99914 6.18660 6.25479 6.60483 7.20193 7.32025 8.03859 8.27815 9.28165 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.027540 B = 0.002344 C = 0.002259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.461745 B =11942.435739 C =12390.664598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.151 4.151 3 C 0.002 3.998 4 H 0.071 0.929 5 C -0.113 4.113 6 C 0.520 3.480 7 O -0.575 6.575 8 N -0.616 5.616 9 C 0.108 3.892 10 C -0.145 4.145 11 C 0.165 3.835 12 H 0.060 0.940 13 N -0.730 5.730 14 C -0.240 4.240 15 H 0.081 0.919 16 C -0.076 4.076 17 N -0.970 5.970 18 Si 0.975 3.025 19 H -0.274 1.274 20 H -0.299 1.299 21 H -0.279 1.279 22 C 0.110 3.890 23 C -0.079 4.079 24 C -0.119 4.119 25 C -0.124 4.124 26 C -0.131 4.131 27 C -0.126 4.126 28 C -0.130 4.130 29 H 0.083 0.917 30 H 0.100 0.900 31 H 0.118 0.882 32 H 0.112 0.888 33 H 0.118 0.882 34 H 0.088 0.912 35 H 0.095 0.905 36 H 0.060 0.940 37 H 0.084 0.916 38 H 0.373 0.627 39 H 0.251 0.749 40 H 0.057 0.943 41 H 0.053 0.947 42 H 0.133 0.867 43 H 0.141 0.859 44 H 0.139 0.861 45 H 0.136 0.864 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.060 -3.174 -28.278 29.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.169 4.169 3 C -0.017 4.017 4 H 0.089 0.911 5 C -0.152 4.152 6 C 0.310 3.690 7 O -0.454 6.454 8 N -0.350 5.350 9 C -0.015 4.015 10 C -0.186 4.186 11 C 0.055 3.945 12 H 0.078 0.922 13 N -0.370 5.370 14 C -0.372 4.372 15 H 0.099 0.901 16 C -0.268 4.268 17 N -0.620 5.620 18 Si 0.804 3.196 19 H -0.200 1.200 20 H -0.225 1.225 21 H -0.205 1.205 22 C -0.014 4.014 23 C -0.079 4.079 24 C -0.137 4.137 25 C -0.142 4.142 26 C -0.149 4.149 27 C -0.144 4.144 28 C -0.148 4.148 29 H 0.102 0.898 30 H 0.118 0.882 31 H 0.135 0.865 32 H 0.131 0.869 33 H 0.136 0.864 34 H 0.106 0.894 35 H 0.113 0.887 36 H 0.079 0.921 37 H 0.103 0.897 38 H 0.205 0.795 39 H 0.060 0.940 40 H 0.076 0.924 41 H 0.071 0.929 42 H 0.151 0.849 43 H 0.158 0.842 44 H 0.157 0.843 45 H 0.154 0.846 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 7.482 -3.321 -28.303 29.463 hybrid contribution -0.474 0.206 1.444 1.534 sum 7.008 -3.115 -26.858 27.932 Atomic orbital electron populations 1.23763 0.96412 1.01342 0.99768 1.22780 0.95866 0.97462 1.00768 1.18972 0.95102 0.96789 0.90809 0.91094 1.21684 0.97869 1.06419 0.89266 1.20986 0.88761 0.75283 0.83962 1.90699 1.16577 1.51672 1.86462 1.48572 1.08890 1.72629 1.04947 1.22205 0.79753 1.03539 0.95954 1.23204 0.99684 1.01897 0.93768 1.21446 0.92840 0.96606 0.83623 0.92223 1.42418 1.60087 1.34028 1.00466 1.19564 1.23740 1.08318 0.85541 0.90098 1.25599 1.01387 0.99205 1.00605 1.69815 1.42949 1.26667 1.22615 0.85193 0.78202 0.77612 0.78626 1.19979 1.22526 1.20500 1.22136 0.95544 1.00158 0.83591 1.19724 0.96566 0.95949 0.95668 1.21203 0.95344 0.98778 0.98377 1.21443 0.99713 0.98867 0.94184 1.21468 0.98420 0.94885 1.00124 1.21389 0.95875 0.99710 0.97454 1.21257 1.00256 0.98372 0.94961 0.89818 0.88197 0.86459 0.86941 0.86398 0.89417 0.88727 0.92083 0.89697 0.79472 0.94023 0.92429 0.92907 0.84871 0.84160 0.84297 0.84598 0.86004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.18 13.22 67.77 0.90 -3.28 16 2 C -0.15 -3.22 7.42 25.64 0.19 -3.03 16 3 C 0.00 0.04 1.99 -12.29 -0.02 0.02 16 4 H 0.07 1.65 7.33 -2.38 -0.02 1.63 16 5 C -0.11 -2.09 4.09 29.85 0.12 -1.97 16 6 C 0.52 14.54 7.60 87.66 0.67 15.20 16 7 O -0.57 -20.49 14.43 -3.05 -0.04 -20.54 16 8 N -0.62 -17.56 3.33 -811.83 -2.70 -20.26 16 9 C 0.11 2.38 6.49 86.73 0.56 2.95 16 10 C -0.14 -4.35 6.65 31.78 0.21 -4.14 16 11 C 0.16 6.26 3.68 46.37 0.17 6.43 16 12 H 0.06 2.30 8.13 -2.39 -0.02 2.28 16 13 N -0.73 -36.01 5.28 -316.43 -1.67 -37.68 16 14 C -0.24 -12.90 9.98 84.03 0.84 -12.06 16 15 H 0.08 4.10 7.83 -2.91 -0.02 4.08 16 16 C -0.08 -4.27 5.50 84.86 0.47 -3.80 16 17 N -0.97 -58.94 13.06 21.65 0.28 -58.66 16 18 Si 0.97 45.22 29.55 68.60 2.03 47.25 16 19 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 20 H -0.30 -14.13 7.11 99.48 0.71 -13.43 16 21 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 22 C 0.11 3.94 6.53 86.85 0.57 4.51 16 23 C -0.08 -1.34 4.77 -19.86 -0.09 -1.44 16 24 C -0.12 -1.71 8.87 22.27 0.20 -1.51 16 25 C -0.12 -1.56 10.05 22.27 0.22 -1.34 16 26 C -0.13 -1.63 10.05 22.27 0.22 -1.41 16 27 C -0.13 -1.76 10.05 22.27 0.22 -1.53 16 28 C -0.13 -2.16 9.67 22.27 0.22 -1.95 16 29 H 0.08 2.16 7.83 -2.91 -0.02 2.14 16 30 H 0.10 2.13 8.06 -2.91 -0.02 2.10 16 31 H 0.12 2.14 8.05 -2.91 -0.02 2.11 16 32 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.12 1.64 7.56 -2.39 -0.02 1.62 16 34 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 37 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 38 H 0.37 20.08 7.71 -92.70 -0.71 19.36 16 39 H 0.25 14.87 8.31 -92.71 -0.77 14.10 16 40 H 0.06 2.23 8.04 -2.38 -0.02 2.22 16 41 H 0.05 2.03 8.00 -2.39 -0.02 2.01 16 42 H 0.13 1.51 7.62 -2.91 -0.02 1.49 16 43 H 0.14 1.14 8.06 -2.91 -0.02 1.12 16 44 H 0.14 1.10 8.06 -2.91 -0.02 1.08 16 45 H 0.14 1.35 8.06 -2.91 -0.02 1.33 16 46 H 0.12 1.89 7.95 -2.91 -0.02 1.86 16 Total: -1.00 -68.91 380.84 3.79 -65.12 By element: Atomic # 1 Polarization: 32.89 SS G_CDS: 0.24 Total: 33.13 kcal Atomic # 6 Polarization: -14.03 SS G_CDS: 5.66 Total: -8.37 kcal Atomic # 7 Polarization: -112.50 SS G_CDS: -4.09 Total: -116.59 kcal Atomic # 8 Polarization: -20.49 SS G_CDS: -0.04 Total: -20.54 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Total: -68.91 3.79 -65.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188009892.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.962 kcal (2) G-P(sol) polarization free energy of solvation -68.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.118 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds