Wall clock time and date at job start Tue Mar 31 2020 10:50:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47133 * 2 1 4 4 N 1.46904 * 109.47305 * 179.84038 * 3 2 1 5 5 C 1.46900 * 110.99794 * 298.47728 * 4 3 2 6 6 C 1.50707 * 109.46897 * 293.13142 * 5 4 3 7 7 H 1.07994 * 120.00152 * 354.96324 * 6 5 4 8 8 C 1.37876 * 119.99853 * 174.95654 * 6 5 4 9 9 N 1.31516 * 120.00182 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 119.99923 * 179.97438 * 8 6 5 11 11 H 1.48507 * 109.46923 * 60.00694 * 10 8 6 12 12 H 1.48502 * 109.47205 * 179.97438 * 10 8 6 13 13 H 1.48494 * 109.47593 * 300.00313 * 10 8 6 14 14 C 1.46900 * 110.99588 * 62.42671 * 4 3 2 15 15 C 1.50696 * 109.47366 * 66.04807 * 14 4 3 16 16 C 1.33990 * 126.41579 * 260.02437 * 15 14 4 17 17 N 1.37505 * 109.89013 * 179.97438 * 16 15 14 18 18 C 1.34772 * 125.16522 * 179.97438 * 17 16 15 19 19 C 1.50693 * 120.00496 * 0.03384 * 18 17 16 20 20 O 1.21231 * 120.00170 * 180.02562 * 18 17 16 21 21 C 1.38357 * 109.66515 * 0.24708 * 17 16 15 22 22 C 1.38916 * 133.39643 * 180.39734 * 21 17 16 23 23 C 1.37856 * 119.92655 * 179.63001 * 22 21 17 24 24 C 1.38754 * 120.62293 * 359.73585 * 23 22 21 25 25 C 1.37713 * 120.35703 * 0.02562 * 24 23 22 26 26 C 1.39544 * 119.66041 * 359.97438 * 25 24 23 27 27 H 1.08998 * 109.46464 * 299.99866 * 1 2 3 28 28 H 1.09001 * 109.47342 * 59.99470 * 1 2 3 29 29 H 1.08991 * 109.47103 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46797 * 240.00560 * 2 1 3 31 31 H 1.08992 * 109.47203 * 120.00676 * 2 1 3 32 32 H 1.09002 * 109.46719 * 59.84592 * 3 2 1 33 33 H 1.08999 * 109.47470 * 299.84671 * 3 2 1 34 34 H 1.08992 * 109.47763 * 53.13196 * 5 4 3 35 35 H 1.08998 * 109.46818 * 173.13693 * 5 4 3 36 36 H 0.96995 * 120.00187 * 179.97438 * 9 8 6 37 37 H 1.09003 * 109.47346 * 306.04496 * 14 4 3 38 38 H 1.09000 * 109.46916 * 186.04739 * 14 4 3 39 39 H 1.07997 * 125.05452 * 359.96389 * 16 15 14 40 40 H 1.09003 * 109.46951 * 359.97438 * 19 18 17 41 41 H 1.09000 * 109.47486 * 119.99450 * 19 18 17 42 42 H 1.09001 * 109.47340 * 239.99815 * 19 18 17 43 43 H 1.08003 * 120.04067 * 359.36636 * 22 21 17 44 44 H 1.07998 * 119.69278 * 179.71662 * 23 22 21 45 45 H 1.08001 * 119.82123 * 180.02562 * 24 23 22 46 46 H 1.07997 * 120.16610 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5091 1.4426 0.0039 5 6 4.0323 0.7898 1.2114 6 6 3.6880 1.6205 2.4207 7 1 3.2079 2.5800 2.2979 8 6 3.9858 1.1553 3.6840 9 7 4.5707 -0.0130 3.8337 10 14 3.5596 2.1853 5.1830 11 1 2.0935 2.4183 5.2229 12 1 3.9797 1.4669 6.4129 13 1 4.2661 3.4891 5.1050 14 6 4.0386 0.8066 -1.2099 15 6 3.6833 1.6437 -2.4115 16 6 2.6769 1.4198 -3.2674 17 7 2.6627 2.3938 -4.2379 18 6 1.7791 2.4652 -5.2530 19 6 0.6984 1.4236 -5.3861 20 8 1.8537 3.3676 -6.0592 21 6 3.6971 3.2859 -4.0174 22 6 4.1256 4.4319 -4.6753 23 6 5.2138 5.1317 -4.1995 24 6 5.8860 4.7060 -3.0628 25 6 5.4741 3.5753 -2.3932 26 6 4.3741 2.8567 -2.8630 27 1 -0.3632 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5137 -0.8900 31 1 1.8934 -0.5139 0.8898 32 1 1.6744 1.9571 0.8886 33 1 1.6790 1.9556 -0.8913 34 1 3.5868 -0.1998 1.3116 35 1 5.1153 0.6944 1.1325 36 1 4.7806 -0.3401 4.7224 37 1 3.6046 -0.1874 -1.3182 38 1 5.1227 0.7232 -1.1329 39 1 1.9806 0.5966 -3.2044 40 1 0.7905 0.6990 -4.5769 41 1 -0.2784 1.9046 -5.3340 42 1 0.8015 0.9132 -6.3437 43 1 3.6094 4.7718 -5.5610 44 1 5.5466 6.0196 -4.7166 45 1 6.7367 5.2645 -2.7011 46 1 5.9998 3.2465 -1.5089 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001204406437.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:50:20 Heat of formation + Delta-G solvation = 28.045955 kcal Electronic energy + Delta-G solvation = -26441.762836 eV Core-core repulsion = 22911.089421 eV Total energy + Delta-G solvation = -3530.673416 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.03646 -39.02682 -37.58892 -36.71240 -33.05386 -32.81535 -31.62449 -31.18111 -29.48316 -28.76548 -27.23012 -26.28402 -24.05052 -22.94204 -22.34713 -22.11206 -20.66365 -19.58017 -18.82450 -17.51769 -16.80266 -16.28558 -16.20019 -15.48852 -15.14117 -14.87316 -14.62000 -14.49121 -14.17679 -13.91663 -13.58978 -13.47960 -13.41732 -13.07836 -12.73707 -12.51856 -12.51720 -12.07328 -11.87667 -11.53810 -11.50012 -11.26899 -11.12473 -11.01083 -10.93958 -10.82650 -10.69006 -10.47723 -10.26430 -9.96719 -9.73980 -9.52523 -9.21059 -8.42591 -8.30338 -7.79382 -7.14836 -6.02521 -4.03181 0.88628 1.38782 2.11223 2.53787 2.91493 3.33400 3.37657 3.41030 3.99633 4.09260 4.43530 4.61514 4.75341 4.88010 4.98308 4.99551 5.08753 5.18617 5.28566 5.33185 5.41234 5.47513 5.49593 5.53011 5.63681 5.77837 5.81420 5.89362 5.93829 6.06344 6.10686 6.25897 6.29838 6.37711 6.45358 6.46671 6.54019 6.69123 6.71756 6.80695 6.93202 7.07761 7.26406 7.30406 7.41332 7.55486 7.81548 8.09363 8.19654 8.55185 9.04845 9.61013 11.07905 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.014254 B = 0.004017 C = 0.003374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1963.955488 B = 6968.251585 C = 8297.386589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.164 4.164 3 C 0.067 3.933 4 N -0.528 5.528 5 C 0.190 3.810 6 C -0.503 4.503 7 H 0.062 0.938 8 C 0.057 3.943 9 N -0.899 5.899 10 Si 0.895 3.105 11 H -0.278 1.278 12 H -0.289 1.289 13 H -0.276 1.276 14 C 0.112 3.888 15 C -0.087 4.087 16 C 0.013 3.987 17 N -0.460 5.460 18 C 0.520 3.480 19 C -0.174 4.174 20 O -0.503 6.503 21 C 0.090 3.910 22 C -0.115 4.115 23 C -0.104 4.104 24 C -0.138 4.138 25 C -0.058 4.058 26 C -0.077 4.077 27 H 0.054 0.946 28 H 0.044 0.956 29 H 0.045 0.955 30 H 0.049 0.951 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.051 0.949 34 H 0.004 0.996 35 H 0.025 0.975 36 H 0.261 0.739 37 H 0.040 0.960 38 H 0.079 0.921 39 H 0.176 0.824 40 H 0.087 0.913 41 H 0.104 0.896 42 H 0.103 0.897 43 H 0.129 0.871 44 H 0.125 0.875 45 H 0.125 0.875 46 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.382 1.573 -16.659 17.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.203 4.203 3 C -0.061 4.061 4 N -0.250 5.250 5 C 0.065 3.935 6 C -0.542 4.542 7 H 0.080 0.920 8 C -0.144 4.144 9 N -0.539 5.539 10 Si 0.723 3.277 11 H -0.204 1.204 12 H -0.214 1.214 13 H -0.202 1.202 14 C -0.017 4.017 15 C -0.093 4.093 16 C -0.104 4.104 17 N -0.165 5.165 18 C 0.312 3.688 19 C -0.233 4.233 20 O -0.377 6.377 21 C -0.009 4.009 22 C -0.135 4.135 23 C -0.123 4.123 24 C -0.157 4.157 25 C -0.076 4.076 26 C -0.080 4.080 27 H 0.073 0.927 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.096 0.904 32 H 0.098 0.902 33 H 0.069 0.931 34 H 0.022 0.978 35 H 0.043 0.957 36 H 0.071 0.929 37 H 0.058 0.942 38 H 0.097 0.903 39 H 0.193 0.807 40 H 0.105 0.895 41 H 0.123 0.877 42 H 0.122 0.878 43 H 0.147 0.853 44 H 0.143 0.857 45 H 0.143 0.857 46 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -4.299 2.427 -17.147 17.844 hybrid contribution -0.568 -0.425 0.960 1.193 sum -4.867 2.002 -16.187 17.021 Atomic orbital electron populations 1.21651 0.96543 1.00627 1.01219 1.22185 0.95478 1.00503 1.02116 1.22028 0.88476 0.94251 1.01380 1.62334 1.06446 1.54646 1.01619 1.19795 0.95043 0.93285 0.85391 1.21091 1.38886 1.04251 0.89948 0.92030 1.24946 0.95443 0.95074 0.98969 1.69937 1.42332 1.18687 1.22967 0.86616 0.78767 0.80366 0.81992 1.20357 1.21437 1.20199 1.20531 1.00419 0.93232 0.87488 1.20733 0.95623 0.95873 0.97031 1.21771 1.02050 0.95453 0.91108 1.42974 1.25637 1.23627 1.24279 1.21238 0.81854 0.86803 0.78898 1.21983 0.97555 0.98204 1.05539 1.90708 1.71913 1.34900 1.40150 1.18411 0.90751 0.93979 0.97724 1.20313 0.98410 0.93677 1.01082 1.20914 0.95176 0.99467 0.96735 1.21010 1.00990 0.97380 0.96322 1.20716 0.94413 0.93707 0.98800 1.19234 0.97308 0.96555 0.94937 0.92694 0.93684 0.93607 0.93195 0.90430 0.90228 0.93085 0.97834 0.95715 0.92941 0.94170 0.90252 0.80694 0.89452 0.87729 0.87810 0.85286 0.85727 0.85707 0.84863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 9.91 37.16 0.37 -1.55 16 2 C -0.16 -2.65 5.28 -26.73 -0.14 -2.79 16 3 C 0.07 1.22 4.98 -3.82 -0.02 1.20 16 4 N -0.53 -10.56 4.69 -237.51 -1.11 -11.67 16 5 C 0.19 4.61 4.52 -4.97 -0.02 4.58 16 6 C -0.50 -13.54 8.40 -34.44 -0.29 -13.83 16 7 H 0.06 1.67 7.36 -52.49 -0.39 1.29 16 8 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 9 N -0.90 -25.87 13.29 55.43 0.74 -25.13 16 10 Si 0.89 21.28 29.54 -169.99 -5.02 16.25 16 11 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 12 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 13 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 14 C 0.11 1.86 5.29 -4.98 -0.03 1.83 16 15 C -0.09 -1.32 4.92 -102.70 -0.50 -1.82 16 16 C 0.01 0.16 9.69 -16.50 -0.16 0.00 16 17 N -0.46 -6.31 2.87 -60.15 -0.17 -6.49 16 18 C 0.52 6.46 7.87 -10.99 -0.09 6.37 16 19 C -0.17 -1.27 10.18 36.00 0.37 -0.90 16 20 O -0.50 -7.71 15.73 5.60 0.09 -7.63 16 21 C 0.09 1.39 6.70 -83.80 -0.56 0.83 16 22 C -0.11 -1.66 9.54 -39.47 -0.38 -2.03 16 23 C -0.10 -1.31 10.02 -39.53 -0.40 -1.71 16 24 C -0.14 -1.79 10.03 -39.58 -0.40 -2.18 16 25 C -0.06 -0.87 10.10 -39.29 -0.40 -1.26 16 26 C -0.08 -1.23 6.34 -105.12 -0.67 -1.89 16 27 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.05 0.72 6.34 -51.93 -0.33 0.39 16 31 H 0.08 1.52 6.28 -51.93 -0.33 1.19 16 32 H 0.08 1.64 6.98 -51.93 -0.36 1.27 16 33 H 0.05 0.85 6.64 -51.93 -0.34 0.51 16 34 H 0.00 0.10 6.01 -51.93 -0.31 -0.21 16 35 H 0.02 0.65 7.91 -51.93 -0.41 0.24 16 36 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 37 H 0.04 0.63 6.08 -51.93 -0.32 0.31 16 38 H 0.08 1.34 7.92 -51.93 -0.41 0.93 16 39 H 0.18 1.65 6.55 -52.49 -0.34 1.30 16 40 H 0.09 0.51 5.92 -51.93 -0.31 0.20 16 41 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.13 1.85 6.76 -52.48 -0.35 1.50 16 44 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 45 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 46 H 0.13 1.99 8.06 -52.49 -0.42 1.56 16 LS Contribution 370.58 15.07 5.58 5.58 Total: -1.00 -31.44 370.58 -10.03 -41.47 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: -6.72 Total: 1.31 kcal Atomic # 6 Polarization: -10.30 SS G_CDS: -3.41 Total: -13.70 kcal Atomic # 7 Polarization: -42.74 SS G_CDS: -0.55 Total: -43.29 kcal Atomic # 8 Polarization: -7.71 SS G_CDS: 0.09 Total: -7.63 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.44 -10.03 -41.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204406437.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.514 kcal (2) G-P(sol) polarization free energy of solvation -31.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.468 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds