Wall clock time and date at job start Tue Mar 31 2020 10:50:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47133 * 2 1 4 4 N 1.46904 * 109.47305 * 179.84038 * 3 2 1 5 5 C 1.46900 * 110.99794 * 298.47728 * 4 3 2 6 6 C 1.50707 * 109.46897 * 293.13142 * 5 4 3 7 7 H 1.07994 * 120.00152 * 354.96324 * 6 5 4 8 8 C 1.37876 * 119.99853 * 174.95654 * 6 5 4 9 9 N 1.31516 * 120.00182 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 119.99923 * 179.97438 * 8 6 5 11 11 H 1.48507 * 109.46923 * 60.00694 * 10 8 6 12 12 H 1.48502 * 109.47205 * 179.97438 * 10 8 6 13 13 H 1.48494 * 109.47593 * 300.00313 * 10 8 6 14 14 C 1.46900 * 110.99588 * 62.42671 * 4 3 2 15 15 C 1.50696 * 109.47366 * 66.04807 * 14 4 3 16 16 C 1.33990 * 126.41579 * 260.02437 * 15 14 4 17 17 N 1.37505 * 109.89013 * 179.97438 * 16 15 14 18 18 C 1.34772 * 125.16522 * 179.97438 * 17 16 15 19 19 C 1.50693 * 120.00496 * 0.03384 * 18 17 16 20 20 O 1.21231 * 120.00170 * 180.02562 * 18 17 16 21 21 C 1.38357 * 109.66515 * 0.24708 * 17 16 15 22 22 C 1.38916 * 133.39643 * 180.39734 * 21 17 16 23 23 C 1.37856 * 119.92655 * 179.63001 * 22 21 17 24 24 C 1.38754 * 120.62293 * 359.73585 * 23 22 21 25 25 C 1.37713 * 120.35703 * 0.02562 * 24 23 22 26 26 C 1.39544 * 119.66041 * 359.97438 * 25 24 23 27 27 H 1.08998 * 109.46464 * 299.99866 * 1 2 3 28 28 H 1.09001 * 109.47342 * 59.99470 * 1 2 3 29 29 H 1.08991 * 109.47103 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46797 * 240.00560 * 2 1 3 31 31 H 1.08992 * 109.47203 * 120.00676 * 2 1 3 32 32 H 1.09002 * 109.46719 * 59.84592 * 3 2 1 33 33 H 1.08999 * 109.47470 * 299.84671 * 3 2 1 34 34 H 1.08992 * 109.47763 * 53.13196 * 5 4 3 35 35 H 1.08998 * 109.46818 * 173.13693 * 5 4 3 36 36 H 0.96995 * 120.00187 * 179.97438 * 9 8 6 37 37 H 1.09003 * 109.47346 * 306.04496 * 14 4 3 38 38 H 1.09000 * 109.46916 * 186.04739 * 14 4 3 39 39 H 1.07997 * 125.05452 * 359.96389 * 16 15 14 40 40 H 1.09003 * 109.46951 * 359.97438 * 19 18 17 41 41 H 1.09000 * 109.47486 * 119.99450 * 19 18 17 42 42 H 1.09001 * 109.47340 * 239.99815 * 19 18 17 43 43 H 1.08003 * 120.04067 * 359.36636 * 22 21 17 44 44 H 1.07998 * 119.69278 * 179.71662 * 23 22 21 45 45 H 1.08001 * 119.82123 * 180.02562 * 24 23 22 46 46 H 1.07997 * 120.16610 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5091 1.4426 0.0039 5 6 4.0323 0.7898 1.2114 6 6 3.6880 1.6205 2.4207 7 1 3.2079 2.5800 2.2979 8 6 3.9858 1.1553 3.6840 9 7 4.5707 -0.0130 3.8337 10 14 3.5596 2.1853 5.1830 11 1 2.0935 2.4183 5.2229 12 1 3.9797 1.4669 6.4129 13 1 4.2661 3.4891 5.1050 14 6 4.0386 0.8066 -1.2099 15 6 3.6833 1.6437 -2.4115 16 6 2.6769 1.4198 -3.2674 17 7 2.6627 2.3938 -4.2379 18 6 1.7791 2.4652 -5.2530 19 6 0.6984 1.4236 -5.3861 20 8 1.8537 3.3676 -6.0592 21 6 3.6971 3.2859 -4.0174 22 6 4.1256 4.4319 -4.6753 23 6 5.2138 5.1317 -4.1995 24 6 5.8860 4.7060 -3.0628 25 6 5.4741 3.5753 -2.3932 26 6 4.3741 2.8567 -2.8630 27 1 -0.3632 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5137 -0.8900 31 1 1.8934 -0.5139 0.8898 32 1 1.6744 1.9571 0.8886 33 1 1.6790 1.9556 -0.8913 34 1 3.5868 -0.1998 1.3116 35 1 5.1153 0.6944 1.1325 36 1 4.7806 -0.3401 4.7224 37 1 3.6046 -0.1874 -1.3182 38 1 5.1227 0.7232 -1.1329 39 1 1.9806 0.5966 -3.2044 40 1 0.7905 0.6990 -4.5769 41 1 -0.2784 1.9046 -5.3340 42 1 0.8015 0.9132 -6.3437 43 1 3.6094 4.7718 -5.5610 44 1 5.5466 6.0196 -4.7166 45 1 6.7367 5.2645 -2.7011 46 1 5.9998 3.2465 -1.5089 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001204406437.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:50:19 Heat of formation + Delta-G solvation = 10.421925 kcal Electronic energy + Delta-G solvation = -26442.527071 eV Core-core repulsion = 22911.089421 eV Total energy + Delta-G solvation = -3531.437651 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.07747 -40.08040 -39.03203 -37.82237 -34.85392 -34.15500 -32.97418 -32.10688 -30.68330 -29.66191 -28.93924 -27.61388 -25.68579 -24.05071 -23.61541 -23.39016 -21.94711 -20.75675 -20.08127 -18.52322 -18.25868 -17.82131 -17.28572 -16.82453 -16.58485 -16.23259 -15.96916 -15.74118 -15.39946 -15.14131 -14.85937 -14.64946 -14.58102 -14.15454 -14.07752 -13.65702 -13.29661 -13.22496 -13.21476 -12.96843 -12.73442 -12.65824 -12.53643 -12.51546 -12.35962 -12.25587 -12.17641 -12.01134 -11.72733 -11.30407 -11.26415 -11.18776 -10.64353 -10.53263 -9.37445 -8.93205 -8.71677 -8.13913 -6.22293 -0.14365 0.29871 1.07223 1.42199 1.43998 1.51729 1.58311 1.88445 2.43737 2.89730 3.18382 3.26647 3.53576 3.67601 3.82272 3.86069 4.17358 4.19404 4.22649 4.26490 4.32658 4.40850 4.53153 4.54184 4.59899 4.64928 4.66811 4.74400 4.82986 4.92091 4.96635 5.00962 5.12693 5.16453 5.20569 5.26229 5.37046 5.41878 5.47714 5.52114 5.59895 5.60848 5.68344 5.74556 6.03460 6.15463 6.28626 6.46127 6.58472 6.75752 6.94579 7.46624 8.95416 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.014254 B = 0.004017 C = 0.003374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1963.955488 B = 6968.251585 C = 8297.386589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.155 4.155 3 C 0.073 3.927 4 N -0.540 5.540 5 C 0.207 3.793 6 C -0.515 4.515 7 H 0.054 0.946 8 C 0.008 3.992 9 N -0.932 5.932 10 Si 0.957 3.043 11 H -0.270 1.270 12 H -0.284 1.284 13 H -0.273 1.273 14 C 0.122 3.878 15 C -0.121 4.121 16 C 0.045 3.955 17 N -0.465 5.465 18 C 0.514 3.486 19 C -0.166 4.166 20 O -0.538 6.538 21 C 0.065 3.935 22 C -0.126 4.126 23 C -0.100 4.100 24 C -0.133 4.133 25 C -0.083 4.083 26 C -0.097 4.097 27 H 0.040 0.960 28 H 0.073 0.927 29 H 0.061 0.939 30 H 0.073 0.927 31 H 0.035 0.965 32 H 0.048 0.952 33 H 0.072 0.928 34 H -0.014 1.014 35 H -0.004 1.004 36 H 0.262 0.738 37 H 0.055 0.945 38 H 0.064 0.936 39 H 0.217 0.783 40 H 0.108 0.892 41 H 0.120 0.880 42 H 0.123 0.877 43 H 0.126 0.874 44 H 0.156 0.844 45 H 0.150 0.850 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.251 1.694 -18.113 19.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.194 4.194 3 C -0.055 4.055 4 N -0.263 5.263 5 C 0.081 3.919 6 C -0.553 4.553 7 H 0.072 0.928 8 C -0.190 4.190 9 N -0.573 5.573 10 Si 0.783 3.217 11 H -0.195 1.195 12 H -0.209 1.209 13 H -0.198 1.198 14 C -0.006 4.006 15 C -0.126 4.126 16 C -0.072 4.072 17 N -0.170 5.170 18 C 0.309 3.691 19 C -0.225 4.225 20 O -0.414 6.414 21 C -0.033 4.033 22 C -0.146 4.146 23 C -0.119 4.119 24 C -0.152 4.152 25 C -0.102 4.102 26 C -0.100 4.100 27 H 0.059 0.941 28 H 0.092 0.908 29 H 0.080 0.920 30 H 0.091 0.909 31 H 0.054 0.946 32 H 0.067 0.933 33 H 0.091 0.909 34 H 0.004 0.996 35 H 0.015 0.985 36 H 0.071 0.929 37 H 0.073 0.927 38 H 0.083 0.917 39 H 0.233 0.767 40 H 0.127 0.873 41 H 0.139 0.861 42 H 0.141 0.859 43 H 0.144 0.856 44 H 0.174 0.826 45 H 0.167 0.833 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -6.184 2.551 -18.622 19.787 hybrid contribution 0.035 -0.421 1.300 1.367 sum -6.149 2.131 -17.321 18.503 Atomic orbital electron populations 1.21616 0.94008 1.01925 1.01945 1.22061 0.97646 0.98529 1.01181 1.21958 0.87161 0.95597 1.00792 1.62172 1.07865 1.54844 1.01377 1.19391 0.93180 0.92381 0.86917 1.21373 1.38495 1.04156 0.91283 0.92783 1.25734 0.95318 0.96139 1.01849 1.70053 1.43404 1.20193 1.23612 0.85624 0.78818 0.78798 0.78509 1.19511 1.20905 1.19784 1.20377 0.99553 0.94059 0.86640 1.20513 0.97738 0.96621 0.97767 1.22273 1.00784 0.95027 0.89078 1.43261 1.25506 1.23361 1.24827 1.22329 0.81961 0.87215 0.77591 1.22123 0.95879 0.97029 1.07434 1.90692 1.72777 1.36692 1.41235 1.18679 0.91773 0.94884 0.97994 1.20492 0.99101 0.93868 1.01142 1.21266 0.94228 1.00013 0.96389 1.21309 1.01338 0.96563 0.95954 1.20833 0.95053 0.95051 0.99233 1.19481 0.97817 0.97178 0.95522 0.94112 0.90832 0.92034 0.90859 0.94572 0.93328 0.90948 0.99609 0.98548 0.92872 0.92683 0.91723 0.76674 0.87289 0.86137 0.85913 0.85569 0.82624 0.83252 0.86034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.34 9.91 71.98 0.71 -2.62 16 2 C -0.16 -4.85 5.28 30.60 0.16 -4.69 16 3 C 0.07 2.63 4.98 86.30 0.43 3.06 16 4 N -0.54 -22.13 4.69 -905.36 -4.24 -26.38 16 5 C 0.21 10.55 4.52 85.56 0.39 10.94 16 6 C -0.51 -28.65 8.40 25.60 0.22 -28.44 16 7 H 0.05 3.03 7.36 -2.91 -0.02 3.00 16 8 C 0.01 0.43 5.46 84.65 0.46 0.89 16 9 N -0.93 -55.03 13.29 21.45 0.28 -54.74 16 10 Si 0.96 44.20 29.54 68.60 2.03 46.23 16 11 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 12 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 13 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 14 C 0.12 4.08 5.29 85.56 0.45 4.53 16 15 C -0.12 -3.57 4.92 -18.62 -0.09 -3.66 16 16 C 0.05 1.03 9.69 82.84 0.80 1.83 16 17 N -0.46 -11.85 2.87 -462.62 -1.33 -13.18 16 18 C 0.51 11.52 7.87 87.66 0.69 12.21 16 19 C -0.17 -1.70 10.18 71.23 0.73 -0.97 16 20 O -0.54 -15.83 15.73 -2.88 -0.05 -15.88 16 21 C 0.07 1.99 6.70 38.84 0.26 2.25 16 22 C -0.13 -3.58 9.54 22.34 0.21 -3.36 16 23 C -0.10 -2.41 10.02 22.30 0.22 -2.19 16 24 C -0.13 -3.36 10.03 22.27 0.22 -3.14 16 25 C -0.08 -2.56 10.10 22.46 0.23 -2.33 16 26 C -0.10 -3.09 6.34 -20.19 -0.13 -3.22 16 27 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.06 1.31 8.14 -2.39 -0.02 1.30 16 30 H 0.07 1.92 6.34 -2.39 -0.02 1.91 16 31 H 0.04 1.43 6.28 -2.39 -0.02 1.42 16 32 H 0.05 2.03 6.98 -2.39 -0.02 2.02 16 33 H 0.07 2.29 6.64 -2.39 -0.02 2.27 16 34 H -0.01 -0.74 6.01 -2.39 -0.01 -0.75 16 35 H 0.00 -0.20 7.91 -2.39 -0.02 -0.22 16 36 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 37 H 0.06 1.66 6.08 -2.39 -0.01 1.64 16 38 H 0.06 2.31 7.92 -2.39 -0.02 2.29 16 39 H 0.22 2.92 6.55 -2.91 -0.02 2.90 16 40 H 0.11 0.64 5.92 -2.39 -0.01 0.62 16 41 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 42 H 0.12 0.87 8.14 -2.39 -0.02 0.85 16 43 H 0.13 3.60 6.76 -2.91 -0.02 3.58 16 44 H 0.16 2.67 8.06 -2.91 -0.02 2.65 16 45 H 0.15 2.92 8.06 -2.91 -0.02 2.90 16 46 H 0.12 3.89 8.06 -2.91 -0.02 3.86 16 Total: -1.00 -72.04 370.58 3.64 -68.40 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: 0.98 Total: 14.48 kcal Atomic # 6 Polarization: -24.89 SS G_CDS: 5.97 Total: -18.93 kcal Atomic # 7 Polarization: -89.01 SS G_CDS: -5.29 Total: -94.30 kcal Atomic # 8 Polarization: -15.83 SS G_CDS: -0.05 Total: -15.88 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Total: -72.04 3.64 -68.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204406437.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.824 kcal (2) G-P(sol) polarization free energy of solvation -72.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.402 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds