Wall clock time and date at job start Tue Mar 31 2020 10:24:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.46800 * 2 1 4 4 H 1.09002 * 109.47550 * 56.55426 * 3 2 1 5 5 C 1.50705 * 109.47120 * 176.55157 * 3 2 1 6 6 H 1.07996 * 119.99728 * 119.99325 * 5 3 2 7 7 C 1.37872 * 119.99909 * 300.00130 * 5 3 2 8 8 N 1.31516 * 120.00371 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 119.99970 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.46860 * 60.00049 * 9 7 5 11 11 H 1.48502 * 109.47084 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.47003 * 299.99863 * 9 7 5 13 13 N 1.46896 * 109.47253 * 296.55157 * 3 2 1 14 14 C 1.46847 * 111.00147 * 298.86524 * 13 3 2 15 15 C 1.53034 * 109.52812 * 174.16037 * 14 13 3 16 16 C 1.53117 * 109.27680 * 59.17462 * 15 14 13 17 17 C 1.50702 * 109.52558 * 182.37784 * 16 15 14 18 18 N 1.29912 * 124.85126 * 59.56859 * 17 16 15 19 19 C 1.36056 * 108.79807 * 179.89897 * 18 17 16 20 20 C 1.39590 * 133.80887 * 180.10161 * 19 18 17 21 21 C 1.37673 * 119.73682 * 180.26483 * 20 19 18 22 22 C 1.38727 * 120.41810 * 0.04380 * 21 20 19 23 23 C 1.37900 * 120.47742 * 359.95285 * 22 21 20 24 24 C 1.38667 * 119.87791 * 0.02882 * 23 22 21 25 25 O 1.34230 * 124.85978 * 239.87869 * 17 16 15 26 26 C 1.53119 * 109.16642 * 302.35016 * 16 15 14 27 27 C 1.46844 * 111.00103 * 174.65437 * 13 3 2 28 28 H 1.09003 * 109.47291 * 65.06982 * 1 2 3 29 29 H 1.08998 * 109.46939 * 185.06629 * 1 2 3 30 30 H 1.09005 * 109.47132 * 305.06920 * 1 2 3 31 31 H 1.08996 * 109.47220 * 240.00195 * 2 1 3 32 32 H 1.08998 * 109.47210 * 119.99498 * 2 1 3 33 33 H 0.97000 * 120.00376 * 180.02562 * 8 7 5 34 34 H 1.09002 * 109.46259 * 54.14264 * 14 13 3 35 35 H 1.09005 * 109.46264 * 294.17672 * 14 13 3 36 36 H 1.09004 * 109.50255 * 299.24105 * 15 14 13 37 37 H 1.08992 * 109.53967 * 179.13860 * 15 14 13 38 38 H 1.09001 * 109.52145 * 62.25727 * 16 15 14 39 39 H 1.08004 * 120.12963 * 0.30619 * 20 19 18 40 40 H 1.07999 * 119.79664 * 180.02562 * 21 20 19 41 41 H 1.08002 * 119.75865 * 179.97438 * 22 21 20 42 42 H 1.08000 * 120.06511 * 180.02562 * 23 22 21 43 43 H 1.08993 * 109.50504 * 177.59346 * 26 16 15 44 44 H 1.09000 * 109.50040 * 297.71419 * 26 16 15 45 45 H 1.08999 * 109.46592 * 305.85302 * 27 13 3 46 46 H 1.08998 * 109.46262 * 65.82249 * 27 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6270 1.9740 0.8575 5 6 3.5445 1.4435 0.0855 6 1 4.1298 1.8951 -0.7019 7 6 4.1738 0.8677 1.1687 8 7 3.4611 0.3181 2.1277 9 14 6.0388 0.8683 1.2743 10 1 6.5342 2.2682 1.2740 11 1 6.4639 0.1936 2.5271 12 1 6.6010 0.1439 0.1061 13 7 1.6194 2.1106 -1.2389 14 6 2.1804 1.4365 -2.4167 15 6 1.6073 2.0668 -3.6881 16 6 1.9566 3.5573 -3.7151 17 6 1.3452 4.1958 -4.9356 18 7 0.0740 4.2210 -5.2024 19 6 -0.1143 4.8791 -6.3782 20 6 -1.2420 5.2027 -7.1345 21 6 -1.0961 5.8917 -8.3175 22 6 0.1638 6.2649 -8.7622 23 6 1.2867 5.9520 -8.0254 24 6 1.1583 5.2588 -6.8313 25 8 2.0366 4.8148 -5.9055 26 6 1.4026 4.2264 -2.4542 27 6 1.9817 3.5335 -1.2186 28 1 -0.3634 0.4332 -0.9319 29 1 -0.3633 -1.0236 0.0908 30 1 -0.3634 0.5905 0.8411 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5137 0.8900 33 1 3.9038 -0.0866 2.8900 34 1 1.9212 0.3782 -2.3874 35 1 3.2651 1.5448 -2.4149 36 1 0.5239 1.9467 -3.6973 37 1 2.0352 1.5768 -4.5626 38 1 3.0396 3.6772 -3.7453 39 1 -2.2251 4.9144 -6.7927 40 1 -1.9680 6.1429 -8.9033 41 1 0.2660 6.8047 -9.6920 42 1 2.2643 6.2461 -8.3776 43 1 1.6849 5.2791 -2.4468 44 1 0.3161 4.1402 -2.4439 45 1 1.5782 3.9983 -0.3191 46 1 3.0672 3.6319 -1.2223 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255164219.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:24:57 Heat of formation + Delta-G solvation = 31.141531 kcal Electronic energy + Delta-G solvation = -26189.264752 eV Core-core repulsion = 22658.725570 eV Total energy + Delta-G solvation = -3530.539181 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.31523 -38.77384 -38.06374 -35.40692 -34.38747 -32.16862 -31.12809 -30.85378 -30.24235 -29.25094 -26.72340 -24.81353 -23.31031 -22.86506 -22.57870 -22.17342 -21.32634 -19.56590 -18.91758 -18.12069 -17.36161 -16.72069 -16.36876 -15.97820 -15.29316 -14.52041 -14.39169 -14.20638 -14.09809 -13.77769 -13.38843 -13.30495 -13.14930 -12.73648 -12.61666 -12.45979 -12.10561 -11.68845 -11.67962 -11.59267 -11.39510 -11.14411 -10.98735 -10.74777 -10.64367 -10.60096 -10.42727 -10.39288 -10.21807 -9.78857 -9.66494 -9.33384 -9.08376 -8.99522 -8.54306 -8.36655 -7.12914 -5.99515 -4.13431 0.54179 1.03051 2.35752 2.40300 3.26557 3.32316 3.34463 3.46997 3.74248 4.35219 4.38210 4.60991 4.80921 4.92556 4.93385 5.00143 5.06660 5.17130 5.23437 5.25391 5.41828 5.69513 5.74355 5.85656 5.93236 5.96853 6.06170 6.08182 6.10821 6.16691 6.17899 6.31004 6.34762 6.46374 6.47638 6.53427 6.62158 6.71321 6.74403 6.85839 7.12304 7.21202 7.34380 7.61059 7.61889 7.76118 7.97147 8.15112 8.31664 8.45979 8.96474 9.54307 10.99399 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.024556 B = 0.002960 C = 0.002748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.997515 B = 9457.620838 C =10187.931202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.113 4.113 3 C 0.215 3.785 4 H 0.040 0.960 5 C -0.545 4.545 6 H 0.056 0.944 7 C 0.069 3.931 8 N -0.885 5.885 9 Si 0.886 3.114 10 H -0.278 1.278 11 H -0.287 1.287 12 H -0.278 1.278 13 N -0.533 5.533 14 C 0.063 3.937 15 C -0.104 4.104 16 C 0.002 3.998 17 C 0.273 3.727 18 N -0.476 5.476 19 C 0.027 3.973 20 C -0.064 4.064 21 C -0.123 4.123 22 C -0.102 4.102 23 C -0.092 4.092 24 C -0.001 4.001 25 O -0.216 6.216 26 C -0.103 4.103 27 C 0.066 3.934 28 H 0.046 0.954 29 H 0.024 0.976 30 H 0.039 0.961 31 H 0.034 0.966 32 H 0.092 0.908 33 H 0.262 0.738 34 H 0.079 0.921 35 H 0.039 0.961 36 H 0.080 0.920 37 H 0.059 0.941 38 H 0.096 0.904 39 H 0.135 0.865 40 H 0.135 0.865 41 H 0.138 0.862 42 H 0.133 0.867 43 H 0.060 0.940 44 H 0.080 0.920 45 H 0.071 0.929 46 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.224 9.442 -17.988 21.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.151 4.151 3 C 0.109 3.891 4 H 0.057 0.943 5 C -0.584 4.584 6 H 0.074 0.926 7 C -0.133 4.133 8 N -0.523 5.523 9 Si 0.714 3.286 10 H -0.204 1.204 11 H -0.213 1.213 12 H -0.204 1.204 13 N -0.257 5.257 14 C -0.066 4.066 15 C -0.143 4.143 16 C -0.018 4.018 17 C 0.062 3.938 18 N -0.205 5.205 19 C -0.085 4.085 20 C -0.083 4.083 21 C -0.142 4.142 22 C -0.120 4.120 23 C -0.111 4.111 24 C -0.051 4.051 25 O -0.108 6.108 26 C -0.142 4.142 27 C -0.062 4.062 28 H 0.065 0.935 29 H 0.043 0.957 30 H 0.059 0.941 31 H 0.052 0.948 32 H 0.110 0.890 33 H 0.072 0.928 34 H 0.097 0.903 35 H 0.058 0.942 36 H 0.099 0.901 37 H 0.078 0.922 38 H 0.114 0.886 39 H 0.153 0.847 40 H 0.153 0.847 41 H 0.155 0.845 42 H 0.151 0.849 43 H 0.078 0.922 44 H 0.099 0.901 45 H 0.090 0.910 46 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -7.195 9.049 -17.458 20.938 hybrid contribution 2.609 0.367 -0.315 2.653 sum -4.586 9.416 -17.772 20.629 Atomic orbital electron populations 1.21701 0.98757 0.98351 1.00657 1.21631 0.92288 0.99162 1.02002 1.19277 0.92729 0.91052 0.86055 0.94252 1.21701 0.92783 1.37847 1.06057 0.92637 1.24897 0.97793 0.95027 0.95606 1.69860 1.35004 1.37775 1.09652 0.86764 0.86321 0.78186 0.77355 1.20390 1.21272 1.20360 1.62419 1.58459 1.00974 1.03890 1.21909 0.97257 0.98687 0.88745 1.21728 1.02972 0.90814 0.98778 1.20107 1.00026 0.95957 0.85697 1.26932 0.85624 0.90848 0.90433 1.70690 1.15784 1.20168 1.13851 1.20024 0.94232 1.00650 0.93601 1.20334 0.96885 0.97663 0.93428 1.21018 0.97828 0.99225 0.96119 1.20966 0.91433 0.99949 0.99654 1.19872 1.00385 0.99673 0.91125 1.20390 0.88658 1.02463 0.93602 1.84547 1.37568 1.59816 1.28835 1.21706 1.02219 0.98006 0.92258 1.21817 0.98379 0.90329 0.95722 0.93452 0.95671 0.94146 0.94777 0.89007 0.92824 0.90314 0.94242 0.90126 0.92216 0.88559 0.84701 0.84715 0.84455 0.84926 0.92156 0.90085 0.91028 0.94268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.74 9.72 37.16 0.36 -2.38 16 2 C -0.11 -2.58 5.02 -26.73 -0.13 -2.71 16 3 C 0.22 5.06 1.76 -68.86 -0.12 4.94 16 4 H 0.04 1.04 8.07 -51.93 -0.42 0.62 16 5 C -0.54 -13.95 7.19 -34.44 -0.25 -14.20 16 6 H 0.06 1.42 5.84 -52.49 -0.31 1.11 16 7 C 0.07 1.84 5.30 -17.82 -0.09 1.74 16 8 N -0.88 -24.31 11.30 55.43 0.63 -23.68 16 9 Si 0.89 20.64 29.54 -169.99 -5.02 15.62 16 10 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 11 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 12 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 13 N -0.53 -10.61 4.12 -228.08 -0.94 -11.55 16 14 C 0.06 1.14 4.80 -3.84 -0.02 1.13 16 15 C -0.10 -1.61 5.35 -26.65 -0.14 -1.76 16 16 C 0.00 0.03 2.72 -91.65 -0.25 -0.22 16 17 C 0.27 4.17 6.76 -13.09 -0.09 4.09 16 18 N -0.48 -7.62 11.32 -8.70 -0.10 -7.72 16 19 C 0.03 0.38 7.24 -84.71 -0.61 -0.23 16 20 C -0.06 -0.71 10.10 -39.28 -0.40 -1.11 16 21 C -0.12 -1.02 10.02 -39.61 -0.40 -1.41 16 22 C -0.10 -0.81 10.03 -39.52 -0.40 -1.21 16 23 C -0.09 -0.93 10.06 -39.55 -0.40 -1.33 16 24 C 0.00 -0.01 7.43 -38.64 -0.29 -0.30 16 25 O -0.22 -3.25 10.77 3.62 0.04 -3.21 16 26 C -0.10 -1.58 5.36 -26.65 -0.14 -1.73 16 27 C 0.07 1.20 5.12 -3.83 -0.02 1.18 16 28 H 0.05 0.91 7.85 -51.93 -0.41 0.50 16 29 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.03 0.76 6.13 -51.93 -0.32 0.44 16 32 H 0.09 2.37 5.99 -51.93 -0.31 2.06 16 33 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 34 H 0.08 1.49 5.97 -51.93 -0.31 1.18 16 35 H 0.04 0.77 6.61 -51.93 -0.34 0.43 16 36 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 37 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.10 1.36 8.14 -51.93 -0.42 0.94 16 39 H 0.14 1.29 8.06 -52.48 -0.42 0.86 16 40 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 41 H 0.14 0.65 8.06 -52.49 -0.42 0.23 16 42 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 43 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 44 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 45 H 0.07 1.32 8.07 -51.93 -0.42 0.90 16 46 H 0.04 0.76 6.99 -51.93 -0.36 0.40 16 LS Contribution 361.41 15.07 5.45 5.45 Total: -1.00 -28.48 361.41 -10.32 -38.80 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -6.98 Total: 1.80 kcal Atomic # 6 Polarization: -12.12 SS G_CDS: -3.39 Total: -15.50 kcal Atomic # 7 Polarization: -42.54 SS G_CDS: -0.41 Total: -42.95 kcal Atomic # 8 Polarization: -3.25 SS G_CDS: 0.04 Total: -3.21 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -28.48 -10.32 -38.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255164219.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.938 kcal (2) G-P(sol) polarization free energy of solvation -28.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.797 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds