Wall clock time and date at job start Tue Mar 31 2020 10:24:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.46800 * 2 1 4 4 H 1.09002 * 109.47550 * 56.55426 * 3 2 1 5 5 C 1.50705 * 109.47120 * 176.55157 * 3 2 1 6 6 H 1.07996 * 119.99728 * 119.99325 * 5 3 2 7 7 C 1.37872 * 119.99909 * 300.00130 * 5 3 2 8 8 N 1.31516 * 120.00371 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 119.99970 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.46860 * 60.00049 * 9 7 5 11 11 H 1.48502 * 109.47084 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.47003 * 299.99863 * 9 7 5 13 13 N 1.46896 * 109.47253 * 296.55157 * 3 2 1 14 14 C 1.46847 * 111.00147 * 298.86524 * 13 3 2 15 15 C 1.53034 * 109.52812 * 174.16037 * 14 13 3 16 16 C 1.53117 * 109.27680 * 59.17462 * 15 14 13 17 17 C 1.50702 * 109.52558 * 182.37784 * 16 15 14 18 18 N 1.29912 * 124.85126 * 59.56859 * 17 16 15 19 19 C 1.36056 * 108.79807 * 179.89897 * 18 17 16 20 20 C 1.39590 * 133.80887 * 180.10161 * 19 18 17 21 21 C 1.37673 * 119.73682 * 180.26483 * 20 19 18 22 22 C 1.38727 * 120.41810 * 0.04380 * 21 20 19 23 23 C 1.37900 * 120.47742 * 359.95285 * 22 21 20 24 24 C 1.38667 * 119.87791 * 0.02882 * 23 22 21 25 25 O 1.34230 * 124.85978 * 239.87869 * 17 16 15 26 26 C 1.53119 * 109.16642 * 302.35016 * 16 15 14 27 27 C 1.46844 * 111.00103 * 174.65437 * 13 3 2 28 28 H 1.09003 * 109.47291 * 65.06982 * 1 2 3 29 29 H 1.08998 * 109.46939 * 185.06629 * 1 2 3 30 30 H 1.09005 * 109.47132 * 305.06920 * 1 2 3 31 31 H 1.08996 * 109.47220 * 240.00195 * 2 1 3 32 32 H 1.08998 * 109.47210 * 119.99498 * 2 1 3 33 33 H 0.97000 * 120.00376 * 180.02562 * 8 7 5 34 34 H 1.09002 * 109.46259 * 54.14264 * 14 13 3 35 35 H 1.09005 * 109.46264 * 294.17672 * 14 13 3 36 36 H 1.09004 * 109.50255 * 299.24105 * 15 14 13 37 37 H 1.08992 * 109.53967 * 179.13860 * 15 14 13 38 38 H 1.09001 * 109.52145 * 62.25727 * 16 15 14 39 39 H 1.08004 * 120.12963 * 0.30619 * 20 19 18 40 40 H 1.07999 * 119.79664 * 180.02562 * 21 20 19 41 41 H 1.08002 * 119.75865 * 179.97438 * 22 21 20 42 42 H 1.08000 * 120.06511 * 180.02562 * 23 22 21 43 43 H 1.08993 * 109.50504 * 177.59346 * 26 16 15 44 44 H 1.09000 * 109.50040 * 297.71419 * 26 16 15 45 45 H 1.08999 * 109.46592 * 305.85302 * 27 13 3 46 46 H 1.08998 * 109.46262 * 65.82249 * 27 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6270 1.9740 0.8575 5 6 3.5445 1.4435 0.0855 6 1 4.1298 1.8951 -0.7019 7 6 4.1738 0.8677 1.1687 8 7 3.4611 0.3181 2.1277 9 14 6.0388 0.8683 1.2743 10 1 6.5342 2.2682 1.2740 11 1 6.4639 0.1936 2.5271 12 1 6.6010 0.1439 0.1061 13 7 1.6194 2.1106 -1.2389 14 6 2.1804 1.4365 -2.4167 15 6 1.6073 2.0668 -3.6881 16 6 1.9566 3.5573 -3.7151 17 6 1.3452 4.1958 -4.9356 18 7 0.0740 4.2210 -5.2024 19 6 -0.1143 4.8791 -6.3782 20 6 -1.2420 5.2027 -7.1345 21 6 -1.0961 5.8917 -8.3175 22 6 0.1638 6.2649 -8.7622 23 6 1.2867 5.9520 -8.0254 24 6 1.1583 5.2588 -6.8313 25 8 2.0366 4.8148 -5.9055 26 6 1.4026 4.2264 -2.4542 27 6 1.9817 3.5335 -1.2186 28 1 -0.3634 0.4332 -0.9319 29 1 -0.3633 -1.0236 0.0908 30 1 -0.3634 0.5905 0.8411 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5137 0.8900 33 1 3.9038 -0.0866 2.8900 34 1 1.9212 0.3782 -2.3874 35 1 3.2651 1.5448 -2.4149 36 1 0.5239 1.9467 -3.6973 37 1 2.0352 1.5768 -4.5626 38 1 3.0396 3.6772 -3.7453 39 1 -2.2251 4.9144 -6.7927 40 1 -1.9680 6.1429 -8.9033 41 1 0.2660 6.8047 -9.6920 42 1 2.2643 6.2461 -8.3776 43 1 1.6849 5.2791 -2.4468 44 1 0.3161 4.1402 -2.4439 45 1 1.5782 3.9983 -0.3191 46 1 3.0672 3.6319 -1.2223 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255164219.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:24:56 Heat of formation + Delta-G solvation = 14.133691 kcal Electronic energy + Delta-G solvation = -26190.002267 eV Core-core repulsion = 22658.725570 eV Total energy + Delta-G solvation = -3531.276697 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -44.30409 -40.22379 -38.93026 -36.88521 -35.57595 -33.98238 -32.72252 -31.67327 -31.62573 -30.32132 -28.45813 -26.28477 -24.64413 -24.16992 -23.89850 -23.14053 -22.57129 -21.11415 -20.53698 -19.02340 -18.28620 -18.22805 -17.77070 -17.28174 -16.67770 -16.08611 -15.68428 -15.38263 -15.13531 -14.96537 -14.85790 -14.72090 -14.56124 -14.37495 -13.66048 -13.48370 -13.26905 -13.19333 -13.13644 -12.96359 -12.77393 -12.59104 -12.50586 -12.43783 -12.16300 -12.04564 -11.98967 -11.74883 -11.54970 -11.47364 -11.35138 -11.03074 -10.93417 -10.38829 -9.80879 -9.43699 -8.87437 -7.99106 -6.22007 -0.32369 0.22509 1.37136 1.40017 1.41214 1.41819 1.47706 2.42384 2.66590 2.74190 3.18830 3.39420 3.50613 3.74026 3.80014 3.82712 4.10739 4.19769 4.30053 4.32201 4.34237 4.46353 4.55214 4.59820 4.61355 4.73080 4.78396 4.87914 4.88461 4.90729 4.95720 5.04738 5.07334 5.13116 5.21534 5.25785 5.32873 5.34689 5.38394 5.42989 5.46808 5.54399 5.67252 5.74145 5.83887 6.10230 6.24157 6.42941 6.58925 6.71833 6.99341 7.48964 8.95151 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.024556 B = 0.002960 C = 0.002748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.997515 B = 9457.620838 C =10187.931202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.107 4.107 3 C 0.221 3.779 4 H 0.005 0.995 5 C -0.550 4.550 6 H 0.053 0.947 7 C 0.023 3.977 8 N -0.911 5.911 9 Si 0.943 3.057 10 H -0.275 1.275 11 H -0.286 1.286 12 H -0.274 1.274 13 N -0.532 5.532 14 C 0.068 3.932 15 C -0.091 4.091 16 C 0.008 3.992 17 C 0.259 3.741 18 N -0.495 5.495 19 C -0.011 4.011 20 C -0.080 4.080 21 C -0.109 4.109 22 C -0.084 4.084 23 C -0.102 4.102 24 C -0.026 4.026 25 O -0.227 6.227 26 C -0.089 4.089 27 C 0.069 3.931 28 H 0.055 0.945 29 H 0.043 0.957 30 H 0.032 0.968 31 H 0.035 0.965 32 H 0.062 0.938 33 H 0.261 0.739 34 H 0.072 0.928 35 H 0.026 0.974 36 H 0.074 0.926 37 H 0.076 0.924 38 H 0.103 0.897 39 H 0.143 0.857 40 H 0.174 0.826 41 H 0.181 0.819 42 H 0.153 0.847 43 H 0.076 0.924 44 H 0.073 0.927 45 H 0.063 0.937 46 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.665 10.860 -21.263 24.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.146 4.146 3 C 0.114 3.886 4 H 0.023 0.977 5 C -0.589 4.589 6 H 0.071 0.929 7 C -0.177 4.177 8 N -0.551 5.551 9 Si 0.769 3.231 10 H -0.201 1.201 11 H -0.212 1.212 12 H -0.199 1.199 13 N -0.256 5.256 14 C -0.061 4.061 15 C -0.129 4.129 16 C -0.012 4.012 17 C 0.047 3.953 18 N -0.225 5.225 19 C -0.122 4.122 20 C -0.099 4.099 21 C -0.128 4.128 22 C -0.101 4.101 23 C -0.121 4.121 24 C -0.075 4.075 25 O -0.120 6.120 26 C -0.127 4.127 27 C -0.060 4.060 28 H 0.074 0.926 29 H 0.062 0.938 30 H 0.051 0.949 31 H 0.054 0.946 32 H 0.080 0.920 33 H 0.070 0.930 34 H 0.090 0.910 35 H 0.044 0.956 36 H 0.092 0.908 37 H 0.094 0.906 38 H 0.121 0.879 39 H 0.161 0.839 40 H 0.191 0.809 41 H 0.198 0.802 42 H 0.171 0.829 43 H 0.095 0.905 44 H 0.092 0.908 45 H 0.081 0.919 46 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -7.639 10.481 -20.757 24.475 hybrid contribution 2.651 0.024 0.547 2.706 sum -4.988 10.505 -20.210 23.317 Atomic orbital electron populations 1.21559 0.96417 0.99508 1.00749 1.21477 0.94340 0.98268 1.00495 1.19034 0.91597 0.91364 0.86573 0.97736 1.21965 0.93990 1.37169 1.05783 0.92885 1.25580 1.01605 0.95026 0.95519 1.69994 1.36364 1.38614 1.10083 0.85852 0.81789 0.78150 0.77269 1.20061 1.21197 1.19895 1.62358 1.58411 1.01765 1.03088 1.21870 0.96451 0.98481 0.89264 1.21559 1.02325 0.91432 0.97613 1.19940 1.00358 0.95269 0.85590 1.26649 0.85639 0.92104 0.90858 1.70599 1.16190 1.20629 1.15066 1.20444 0.95741 1.02144 0.93853 1.20683 0.96433 0.98412 0.94342 1.21533 0.99524 0.96866 0.94846 1.21558 0.90371 0.97980 1.00206 1.20356 1.02419 0.99227 0.90094 1.20947 0.88271 1.03707 0.94604 1.84488 1.38080 1.60156 1.29227 1.21529 1.01462 0.98607 0.91134 1.21809 0.97680 0.89483 0.97030 0.92590 0.93794 0.94871 0.94644 0.91995 0.93014 0.91004 0.95608 0.90778 0.90584 0.87872 0.83943 0.80870 0.80183 0.82931 0.90497 0.90784 0.91850 0.95524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.00 9.72 71.98 0.70 -4.30 16 2 C -0.11 -5.04 5.02 30.59 0.15 -4.89 16 3 C 0.22 10.79 1.76 44.17 0.08 10.87 16 4 H 0.00 0.26 8.07 -2.39 -0.02 0.24 16 5 C -0.55 -28.87 7.19 25.60 0.18 -28.69 16 6 H 0.05 2.76 5.84 -2.91 -0.02 2.74 16 7 C 0.02 1.22 5.30 84.65 0.45 1.67 16 8 N -0.91 -51.48 11.30 21.45 0.24 -51.24 16 9 Si 0.94 42.92 29.54 68.60 2.03 44.94 16 10 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 11 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 12 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 13 N -0.53 -21.69 4.12 -875.51 -3.61 -25.29 16 14 C 0.07 2.50 4.80 86.32 0.41 2.92 16 15 C -0.09 -2.79 5.35 30.64 0.16 -2.63 16 16 C 0.01 0.24 2.72 -11.46 -0.03 0.21 16 17 C 0.26 7.93 6.76 88.39 0.60 8.52 16 18 N -0.50 -15.89 11.32 -296.25 -3.35 -19.25 16 19 C -0.01 -0.30 7.24 39.32 0.28 -0.01 16 20 C -0.08 -1.61 10.10 22.46 0.23 -1.39 16 21 C -0.11 -1.36 10.02 22.25 0.22 -1.14 16 22 C -0.08 -0.96 10.03 22.31 0.22 -0.73 16 23 C -0.10 -1.80 10.06 22.29 0.22 -1.58 16 24 C -0.03 -0.68 7.43 22.88 0.17 -0.51 16 25 O -0.23 -6.82 10.77 -9.97 -0.11 -6.93 16 26 C -0.09 -2.73 5.36 30.65 0.16 -2.57 16 27 C 0.07 2.55 5.12 86.33 0.44 3.00 16 28 H 0.06 2.12 7.85 -2.39 -0.02 2.10 16 29 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.03 1.34 8.14 -2.38 -0.02 1.32 16 31 H 0.03 1.62 6.13 -2.39 -0.01 1.60 16 32 H 0.06 3.30 5.99 -2.39 -0.01 3.29 16 33 H 0.26 14.15 8.31 -92.71 -0.77 13.38 16 34 H 0.07 2.74 5.97 -2.39 -0.01 2.73 16 35 H 0.03 1.03 6.61 -2.38 -0.02 1.01 16 36 H 0.07 2.40 8.14 -2.38 -0.02 2.38 16 37 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 38 H 0.10 2.89 8.14 -2.39 -0.02 2.87 16 39 H 0.14 2.51 8.06 -2.91 -0.02 2.48 16 40 H 0.17 0.83 8.06 -2.91 -0.02 0.81 16 41 H 0.18 0.56 8.06 -2.91 -0.02 0.53 16 42 H 0.15 1.98 8.06 -2.91 -0.02 1.95 16 43 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 44 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 45 H 0.06 2.43 8.07 -2.39 -0.02 2.41 16 46 H 0.03 1.05 6.99 -2.39 -0.02 1.04 16 Total: -1.00 -64.16 361.41 0.84 -63.32 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: 0.97 Total: 15.71 kcal Atomic # 6 Polarization: -25.93 SS G_CDS: 4.67 Total: -21.26 kcal Atomic # 7 Polarization: -89.07 SS G_CDS: -6.72 Total: -95.78 kcal Atomic # 8 Polarization: -6.82 SS G_CDS: -0.11 Total: -6.93 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.94 kcal Total: -64.16 0.84 -63.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255164219.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.454 kcal (2) G-P(sol) polarization free energy of solvation -64.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.320 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds