Wall clock time and date at job start Tue Mar 31 2020 10:24:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47003 * 2 1 4 4 H 1.09000 * 109.46820 * 55.00416 * 3 2 1 5 5 C 1.50706 * 109.46867 * 175.00159 * 3 2 1 6 6 H 1.07997 * 119.99965 * 120.00357 * 5 3 2 7 7 C 1.37870 * 119.99955 * 300.00119 * 5 3 2 8 8 N 1.31520 * 120.00389 * 180.02562 * 7 5 3 9 9 Si 1.86800 * 120.00359 * 0.02562 * 7 5 3 10 10 H 1.48500 * 109.47203 * 89.99610 * 9 7 5 11 11 H 1.48494 * 109.47492 * 210.00179 * 9 7 5 12 12 H 1.48507 * 109.46878 * 330.00001 * 9 7 5 13 13 N 1.46899 * 109.47338 * 295.00060 * 3 2 1 14 14 C 1.48639 * 111.00108 * 295.12365 * 13 3 2 15 15 C 1.54620 * 104.63070 * 201.44709 * 14 13 3 16 16 C 1.53341 * 104.70521 * 23.71012 * 15 14 13 17 17 C 1.48790 * 110.99868 * 179.52355 * 13 3 2 18 18 C 1.50235 * 111.52766 * 238.18281 * 16 15 14 19 19 C 1.37701 * 133.50467 * 58.98473 * 18 16 15 20 20 C 1.38357 * 120.02851 * 180.33082 * 19 18 16 21 21 C 1.38308 * 119.84096 * 0.05100 * 20 19 18 22 22 C 1.37935 * 120.32912 * 359.93749 * 21 20 19 23 23 C 1.39175 * 105.85750 * 239.27789 * 18 16 15 24 24 N 1.39659 * 110.22781 * 359.67012 * 23 18 16 25 25 C 1.46504 * 123.91597 * 179.97438 * 24 23 18 26 26 C 1.34703 * 112.16155 * 0.03048 * 24 23 18 27 27 O 1.21289 * 126.66152 * 180.02562 * 26 24 23 28 28 H 1.08995 * 109.47118 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46981 * 299.99944 * 1 2 3 30 30 H 1.09009 * 109.47280 * 59.99638 * 1 2 3 31 31 H 1.09002 * 109.47170 * 240.00576 * 2 1 3 32 32 H 1.08992 * 109.47298 * 120.00397 * 2 1 3 33 33 H 0.96997 * 120.00751 * 179.97438 * 8 7 5 34 34 H 1.09006 * 110.40193 * 82.65902 * 14 13 3 35 35 H 1.09000 * 110.40840 * 320.24097 * 14 13 3 36 36 H 1.09000 * 110.39199 * 264.90219 * 15 14 13 37 37 H 1.08997 * 110.48951 * 142.56553 * 15 14 13 38 38 H 1.08999 * 110.45344 * 39.53766 * 17 13 3 39 39 H 1.08996 * 110.45474 * 276.98343 * 17 13 3 40 40 H 1.07995 * 119.98778 * 0.35280 * 19 18 16 41 41 H 1.08002 * 120.08323 * 180.02562 * 20 19 18 42 42 H 1.07998 * 119.83546 * 179.97438 * 21 20 19 43 43 H 1.07991 * 119.89411 * 179.97438 * 22 21 20 44 44 H 1.08996 * 109.47333 * 0.02768 * 25 24 23 45 45 H 1.08996 * 109.46819 * 120.02637 * 25 24 23 46 46 H 1.09002 * 109.47198 * 240.02339 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8419 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8784 1.2278 8 7 5.4540 0.8803 1.3362 9 14 3.0965 0.1087 2.5700 10 1 2.8756 -1.3273 2.2632 11 1 3.7937 0.2346 3.8750 12 1 1.7877 0.8072 2.6386 13 7 1.6513 2.0993 -1.2552 14 6 2.3205 1.4620 -2.4193 15 6 2.2810 2.5374 -3.5295 16 6 2.1557 3.8682 -2.7781 17 6 2.1214 3.5107 -1.2862 18 6 0.9234 4.6212 -3.1922 19 6 -0.4216 4.3273 -3.1632 20 6 -1.3416 5.2472 -3.6341 21 6 -0.9068 6.4611 -4.1345 22 6 0.4395 6.7598 -4.1652 23 6 1.3725 5.8398 -3.6923 24 7 2.7653 5.9088 -3.6172 25 6 3.5520 7.0614 -4.0635 26 6 3.3016 4.7922 -3.0880 27 8 4.4798 4.5724 -2.9023 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.8933 -0.5137 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 5.8771 0.4825 2.1131 34 1 1.7734 0.5725 -2.7321 35 1 3.3514 1.2078 -2.1729 36 1 1.4174 2.3838 -4.1766 37 1 3.2008 2.5165 -4.1140 38 1 3.1184 3.5897 -0.8527 39 1 1.4221 4.1568 -0.7557 40 1 -0.7586 3.3786 -2.7725 41 1 -2.3967 5.0178 -3.6115 42 1 -1.6249 7.1789 -4.5024 43 1 0.7713 7.7095 -4.5578 44 1 2.8830 7.8298 -4.4508 45 1 4.1179 7.4624 -3.2227 46 1 4.2403 6.7493 -4.8489 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255172297.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:24:39 Heat of formation + Delta-G solvation = 4.136681 kcal Electronic energy + Delta-G solvation = -27508.147838 eV Core-core repulsion = 23976.437639 eV Total energy + Delta-G solvation = -3531.710200 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.03449 -39.78227 -39.45055 -36.90614 -36.32934 -34.15012 -32.96215 -31.13865 -30.94392 -29.37171 -28.81364 -28.05909 -24.99484 -23.86782 -23.22134 -23.20039 -22.16098 -21.13918 -20.43671 -18.87551 -18.11908 -17.91054 -17.30014 -17.02771 -16.87323 -16.17384 -15.75136 -15.42092 -15.09340 -14.91259 -14.84746 -14.79932 -14.45622 -14.27474 -14.17194 -13.86968 -13.51331 -13.35179 -13.34616 -13.03858 -12.90236 -12.77152 -12.53988 -12.46669 -12.16767 -12.13519 -11.97180 -11.60468 -11.45243 -11.40563 -11.36606 -11.14913 -11.02501 -10.68935 -9.71774 -9.17073 -8.87160 -8.31724 -6.37074 0.21667 0.49770 1.27946 1.33291 1.33585 1.44369 1.67902 2.29227 2.91147 2.94993 3.02730 3.25664 3.51635 3.71180 3.73192 3.90768 4.11308 4.25120 4.34900 4.36664 4.38083 4.43461 4.44688 4.47386 4.59894 4.65836 4.67574 4.70872 4.76587 4.81873 4.86330 4.92447 5.07010 5.09561 5.15638 5.15981 5.23583 5.25590 5.45613 5.50195 5.57154 5.60019 5.70032 5.70774 5.78627 6.03830 6.14493 6.18718 6.29716 6.71997 6.77806 7.29780 8.85069 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.016943 B = 0.004820 C = 0.004092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.195323 B = 5807.949998 C = 6841.062948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.118 4.118 3 C 0.174 3.826 4 H 0.033 0.967 5 C -0.539 4.539 6 H 0.032 0.968 7 C 0.013 3.987 8 N -0.950 5.950 9 Si 0.952 3.048 10 H -0.263 1.263 11 H -0.303 1.303 12 H -0.242 1.242 13 N -0.471 5.471 14 C 0.035 3.965 15 C -0.084 4.084 16 C -0.055 4.055 17 C 0.069 3.931 18 C -0.128 4.128 19 C -0.060 4.060 20 C -0.135 4.135 21 C -0.081 4.081 22 C -0.137 4.137 23 C 0.117 3.883 24 N -0.556 5.556 25 C 0.074 3.926 26 C 0.522 3.478 27 O -0.540 6.540 28 H 0.058 0.942 29 H 0.045 0.955 30 H 0.074 0.926 31 H 0.056 0.944 32 H 0.033 0.967 33 H 0.264 0.736 34 H 0.097 0.903 35 H 0.025 0.975 36 H 0.108 0.892 37 H 0.054 0.946 38 H 0.023 0.977 39 H 0.083 0.917 40 H 0.136 0.864 41 H 0.157 0.843 42 H 0.165 0.835 43 H 0.148 0.852 44 H 0.121 0.879 45 H 0.063 0.937 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.401 11.352 -13.475 25.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.156 4.156 3 C 0.065 3.935 4 H 0.050 0.950 5 C -0.578 4.578 6 H 0.050 0.950 7 C -0.185 4.185 8 N -0.591 5.591 9 Si 0.779 3.221 10 H -0.189 1.189 11 H -0.232 1.232 12 H -0.166 1.166 13 N -0.194 5.194 14 C -0.093 4.093 15 C -0.122 4.122 16 C -0.059 4.059 17 C -0.060 4.060 18 C -0.131 4.131 19 C -0.078 4.078 20 C -0.153 4.153 21 C -0.099 4.099 22 C -0.157 4.157 23 C 0.022 3.978 24 N -0.278 5.278 25 C -0.066 4.066 26 C 0.311 3.689 27 O -0.417 6.417 28 H 0.077 0.923 29 H 0.064 0.936 30 H 0.093 0.907 31 H 0.075 0.925 32 H 0.052 0.948 33 H 0.073 0.927 34 H 0.115 0.885 35 H 0.044 0.956 36 H 0.126 0.874 37 H 0.073 0.927 38 H 0.041 0.959 39 H 0.101 0.899 40 H 0.153 0.847 41 H 0.174 0.826 42 H 0.182 0.818 43 H 0.166 0.834 44 H 0.139 0.861 45 H 0.082 0.918 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -18.062 11.229 -13.326 25.098 hybrid contribution 2.309 -0.411 1.176 2.623 sum -15.754 10.818 -12.150 22.646 Atomic orbital electron populations 1.21659 0.93742 1.01323 1.02418 1.21787 0.97122 0.96641 1.00050 1.19736 0.91454 0.92691 0.89651 0.94951 1.21870 0.92901 1.37334 1.05707 0.94992 1.25899 0.95773 0.96227 1.00594 1.70109 1.11165 1.47026 1.30757 0.85803 0.79552 0.79676 0.77077 1.18948 1.23163 1.16550 1.65797 1.50628 1.00202 1.02779 1.23110 0.97995 0.97676 0.90505 1.22094 1.02659 0.90208 0.97278 1.20140 0.91894 0.96018 0.97887 1.22628 0.98859 0.92655 0.91850 1.19490 0.94106 0.94526 1.04978 1.20516 0.89533 1.00747 0.97023 1.21435 1.00500 0.93683 0.99700 1.21298 0.94284 0.97283 0.97013 1.20637 0.92042 0.99179 1.03888 1.18657 0.82001 0.96781 1.00317 1.45930 1.06162 1.17370 1.58354 1.22027 0.96758 0.87221 1.00608 1.20718 0.89099 0.83216 0.75827 1.90766 1.18607 1.78085 1.54248 0.92281 0.93631 0.90699 0.92479 0.94838 0.92746 0.88481 0.95644 0.87397 0.92680 0.95895 0.89890 0.84657 0.82556 0.81798 0.83427 0.86094 0.91811 0.91173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.23 9.80 71.98 0.71 -3.53 16 2 C -0.12 -4.86 4.84 30.59 0.15 -4.71 16 3 C 0.17 8.10 1.42 44.17 0.06 8.16 16 4 H 0.03 1.57 7.20 -2.39 -0.02 1.56 16 5 C -0.54 -31.49 7.07 25.60 0.18 -31.31 16 6 H 0.03 2.16 5.96 -2.91 -0.02 2.14 16 7 C 0.01 0.75 5.45 84.65 0.46 1.21 16 8 N -0.95 -62.16 13.96 21.45 0.30 -61.86 16 9 Si 0.95 46.12 24.41 68.60 1.67 47.79 16 10 H -0.26 -12.06 6.83 99.48 0.68 -11.38 16 11 H -0.30 -14.82 7.11 99.48 0.71 -14.12 16 12 H -0.24 -10.74 6.53 99.48 0.65 -10.09 16 13 N -0.47 -18.93 4.85 -861.25 -4.18 -23.11 16 14 C 0.04 1.39 5.33 86.52 0.46 1.85 16 15 C -0.08 -2.84 6.33 31.26 0.20 -2.65 16 16 C -0.06 -1.95 0.93 -53.64 -0.05 -2.00 16 17 C 0.07 2.87 5.43 86.09 0.47 3.34 16 18 C -0.13 -3.48 4.72 -19.91 -0.09 -3.58 16 19 C -0.06 -1.27 10.01 22.17 0.22 -1.05 16 20 C -0.13 -1.97 10.06 22.31 0.22 -1.74 16 21 C -0.08 -1.01 10.02 22.21 0.22 -0.79 16 22 C -0.14 -2.23 9.72 22.45 0.22 -2.02 16 23 C 0.12 2.88 6.71 38.37 0.26 3.14 16 24 N -0.56 -16.22 3.15 -654.57 -2.06 -18.28 16 25 C 0.07 1.57 10.89 127.77 1.39 2.96 16 26 C 0.52 20.32 6.64 87.58 0.58 20.90 16 27 O -0.54 -26.29 17.74 -3.06 -0.05 -26.34 16 28 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.07 2.18 7.75 -2.38 -0.02 2.16 16 31 H 0.06 2.33 6.86 -2.39 -0.02 2.32 16 32 H 0.03 1.47 3.21 -2.39 -0.01 1.46 16 33 H 0.26 16.18 8.31 -92.71 -0.77 15.41 16 34 H 0.10 3.29 7.60 -2.38 -0.02 3.27 16 35 H 0.03 1.25 5.86 -2.39 -0.01 1.24 16 36 H 0.11 2.91 7.73 -2.39 -0.02 2.90 16 37 H 0.05 1.98 7.76 -2.39 -0.02 1.97 16 38 H 0.02 1.20 5.97 -2.39 -0.01 1.19 16 39 H 0.08 3.21 7.85 -2.39 -0.02 3.19 16 40 H 0.14 2.84 8.06 -2.91 -0.02 2.82 16 41 H 0.16 1.37 8.06 -2.91 -0.02 1.35 16 42 H 0.16 0.89 8.06 -2.91 -0.02 0.87 16 43 H 0.15 1.56 7.22 -2.92 -0.02 1.54 16 44 H 0.12 1.51 6.93 -2.39 -0.02 1.50 16 45 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 46 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 Total: -1.00 -78.76 352.90 2.24 -76.52 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: 0.90 Total: 17.08 kcal Atomic # 6 Polarization: -17.46 SS G_CDS: 5.66 Total: -11.80 kcal Atomic # 7 Polarization: -97.32 SS G_CDS: -5.94 Total: -103.26 kcal Atomic # 8 Polarization: -26.29 SS G_CDS: -0.05 Total: -26.34 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 1.67 Total: 47.79 kcal Total: -78.76 2.24 -76.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255172297.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.661 kcal (2) G-P(sol) polarization free energy of solvation -78.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.524 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds