Wall clock time and date at job start Tue Mar 31 2020 10:25:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47167 * 2 1 4 4 H 1.09001 * 109.47364 * 304.78730 * 3 2 1 5 5 C 1.50699 * 109.47163 * 64.78452 * 3 2 1 6 6 H 1.08007 * 120.00152 * 84.43460 * 5 3 2 7 7 C 1.37881 * 120.00371 * 264.42911 * 5 3 2 8 8 N 1.31514 * 119.99868 * 343.90957 * 7 5 3 9 9 Si 1.86799 * 119.99883 * 163.90303 * 7 5 3 10 10 H 1.48503 * 109.47206 * 270.00219 * 9 7 5 11 11 H 1.48496 * 109.47290 * 30.00707 * 9 7 5 12 12 H 1.48506 * 109.46832 * 150.00339 * 9 7 5 13 13 N 1.46896 * 109.47506 * 184.78958 * 3 2 1 14 14 C 1.46843 * 111.00170 * 72.05111 * 13 3 2 15 15 C 1.53037 * 109.52353 * 174.16417 * 14 13 3 16 16 C 1.53122 * 109.27770 * 59.17987 * 15 14 13 17 17 C 1.53111 * 109.16092 * 302.34637 * 16 15 14 18 18 H 1.09005 * 109.50504 * 297.66793 * 17 16 15 19 19 O 1.42907 * 109.50438 * 177.59733 * 17 16 15 20 20 C 1.35913 * 117.00276 * 84.99610 * 19 17 16 21 21 C 1.38859 * 119.97934 * 354.62997 * 20 19 17 22 22 C 1.38243 * 120.25167 * 179.97438 * 21 20 19 23 23 C 1.37997 * 120.21257 * 0.02562 * 22 21 20 24 24 C 1.39622 * 119.95488 * 0.02562 * 23 22 21 25 25 C 1.43202 * 120.12329 * 179.97438 * 24 23 22 26 26 N 9.55282 * 122.13517 * 322.21589 * 6 1 2 27 27 C 1.38432 * 119.98115 * 174.35330 * 20 19 17 28 28 C 1.46855 * 110.99676 * 307.84515 * 13 3 2 29 29 H 1.08991 * 109.47527 * 293.89537 * 1 2 3 30 30 H 1.09006 * 109.46791 * 53.89823 * 1 2 3 31 31 H 1.09003 * 109.47034 * 173.88928 * 1 2 3 32 32 H 1.08997 * 109.47696 * 239.99174 * 2 1 3 33 33 H 1.09009 * 109.46471 * 119.99628 * 2 1 3 34 34 H 0.96997 * 119.99954 * 358.29553 * 8 7 5 35 35 H 1.09003 * 109.46381 * 294.17809 * 14 13 3 36 36 H 1.09000 * 109.46141 * 54.15158 * 14 13 3 37 37 H 1.09007 * 109.50349 * 179.11902 * 15 14 13 38 38 H 1.08999 * 109.50505 * 299.19820 * 15 14 13 39 39 H 1.09001 * 109.52081 * 62.25185 * 16 15 14 40 40 H 1.09007 * 109.52396 * 182.37430 * 16 15 14 41 41 H 1.08003 * 119.87444 * 359.97438 * 21 20 19 42 42 H 1.08002 * 119.89679 * 180.02562 * 22 21 20 43 43 H 1.07994 * 120.02226 * 180.02562 * 23 22 21 44 44 H 1.07996 * 120.10870 * 359.97438 * 27 20 19 45 45 H 1.09005 * 109.46169 * 305.85346 * 28 13 3 46 46 H 1.08995 * 109.46169 * 65.81821 * 28 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6084 1.9805 -0.8440 5 6 1.6368 2.1178 1.2854 6 1 2.2457 2.0028 2.1700 7 6 0.4906 2.8828 1.3323 8 7 -0.0763 3.2870 0.2165 9 14 -0.2572 3.3448 2.9805 10 1 -1.2331 2.3034 3.3908 11 1 0.8172 3.4458 4.0007 12 1 -0.9501 4.6528 2.8604 13 7 3.5044 1.4441 -0.1156 14 6 3.9260 1.0588 -1.4684 15 6 5.4435 1.2116 -1.5943 16 6 6.1292 0.3225 -0.5531 17 6 5.6364 0.7122 0.8432 18 1 5.9165 1.7445 1.0531 19 8 6.2294 -0.1502 1.8163 20 6 7.4631 0.1911 2.2732 21 6 8.1364 1.2691 1.7140 22 6 9.3912 1.6215 2.1748 23 6 9.9837 0.9037 3.1936 24 6 9.3151 -0.1825 3.7614 25 6 9.9268 -0.9302 4.8185 26 7 10.4104 -1.5209 5.6597 27 6 8.0453 -0.5327 3.2996 28 6 4.1134 0.5738 0.8984 29 1 -0.3634 0.4162 0.9395 30 1 -0.3633 0.6056 -0.8304 31 1 -0.3633 -1.0219 -0.1094 32 1 1.8935 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 0.3256 3.0679 -0.6387 35 1 3.6490 0.0209 -1.6533 36 1 3.4345 1.7014 -2.1989 37 1 5.7579 0.9106 -2.5936 38 1 5.7198 2.2521 -1.4238 39 1 5.8841 -0.7216 -0.7477 40 1 7.2090 0.4602 -0.6110 41 1 7.6779 1.8345 0.9161 42 1 9.9095 2.4613 1.7360 43 1 10.9639 1.1820 3.5514 44 1 7.5206 -1.3683 3.7386 45 1 3.7579 0.8642 1.8871 46 1 3.8354 -0.4618 0.7025 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255174017.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:25:22 Heat of formation + Delta-G solvation = 14.929699 kcal Electronic energy + Delta-G solvation = -26091.341010 eV Core-core repulsion = 22560.098831 eV Total energy + Delta-G solvation = -3531.242179 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.62305 -38.94131 -37.61910 -36.36995 -34.78208 -32.04814 -31.58653 -30.85678 -30.66697 -29.30688 -26.23920 -24.58896 -23.93888 -22.97372 -22.55861 -22.22208 -20.67666 -19.31873 -19.04568 -16.95078 -16.66600 -16.44919 -16.14952 -15.42253 -15.09948 -14.57768 -14.34119 -14.17420 -13.88316 -13.75894 -13.65582 -13.62701 -13.45529 -13.19798 -12.90316 -12.72379 -12.49027 -12.13634 -12.05674 -11.74135 -11.67278 -11.52613 -11.00556 -10.88791 -10.86976 -10.67757 -10.47304 -10.45285 -10.18741 -10.00936 -9.99106 -9.67391 -9.28824 -8.82645 -8.42765 -8.18513 -7.31750 -6.40227 -4.04802 0.48242 1.13263 2.36388 2.70863 3.02303 3.42383 3.44498 3.60529 3.62204 3.69973 4.47268 4.50980 4.72435 4.76332 4.80484 4.83824 4.96241 5.04313 5.13653 5.24210 5.32947 5.36713 5.48489 5.63135 5.72358 5.86253 5.88292 5.93247 5.99292 6.03760 6.07426 6.08642 6.14209 6.16667 6.29248 6.31161 6.38705 6.43238 6.50895 6.72135 6.84033 6.98024 7.20218 7.21558 7.29732 7.34468 7.75142 8.05221 8.30810 8.52580 8.85204 9.61208 10.96988 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.014914 B = 0.003299 C = 0.002995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1876.970126 B = 8485.259426 C = 9346.744959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.144 4.144 3 C 0.199 3.801 4 H 0.051 0.949 5 C -0.582 4.582 6 H 0.053 0.947 7 C 0.032 3.968 8 N -0.903 5.903 9 Si 1.060 2.940 10 H -0.288 1.288 11 H -0.288 1.288 12 H -0.286 1.286 13 N -0.519 5.519 14 C 0.045 3.955 15 C -0.111 4.111 16 C -0.142 4.142 17 C 0.086 3.914 18 H 0.083 0.917 19 O -0.306 6.306 20 C 0.143 3.857 21 C -0.180 4.180 22 C -0.079 4.079 23 C -0.115 4.115 24 C 0.006 3.994 25 C 0.260 3.740 26 N -0.419 5.419 27 C -0.110 4.110 28 C 0.070 3.930 29 H 0.065 0.935 30 H 0.044 0.956 31 H 0.024 0.976 32 H 0.023 0.977 33 H 0.048 0.952 34 H 0.269 0.731 35 H 0.026 0.974 36 H 0.070 0.930 37 H 0.064 0.936 38 H 0.070 0.930 39 H 0.068 0.932 40 H 0.064 0.936 41 H 0.141 0.859 42 H 0.135 0.865 43 H 0.132 0.868 44 H 0.140 0.860 45 H 0.090 0.910 46 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.703 -4.158 -1.455 16.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.183 4.183 3 C 0.093 3.907 4 H 0.069 0.931 5 C -0.620 4.620 6 H 0.071 0.929 7 C -0.174 4.174 8 N -0.539 5.539 9 Si 0.889 3.111 10 H -0.214 1.214 11 H -0.214 1.214 12 H -0.212 1.212 13 N -0.244 5.244 14 C -0.084 4.084 15 C -0.149 4.149 16 C -0.180 4.180 17 C 0.030 3.970 18 H 0.101 0.899 19 O -0.218 6.218 20 C 0.097 3.903 21 C -0.199 4.199 22 C -0.097 4.097 23 C -0.136 4.136 24 C 0.002 3.998 25 C -0.055 4.055 26 N -0.094 5.094 27 C -0.131 4.131 28 C -0.058 4.058 29 H 0.084 0.916 30 H 0.064 0.936 31 H 0.043 0.957 32 H 0.042 0.958 33 H 0.067 0.933 34 H 0.082 0.918 35 H 0.044 0.956 36 H 0.088 0.912 37 H 0.083 0.917 38 H 0.089 0.911 39 H 0.087 0.913 40 H 0.083 0.917 41 H 0.158 0.842 42 H 0.153 0.847 43 H 0.150 0.850 44 H 0.158 0.842 45 H 0.108 0.892 46 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 15.216 -3.944 0.676 15.734 hybrid contribution 0.848 -1.317 -1.349 2.067 sum 16.065 -5.261 -0.673 16.918 Atomic orbital electron populations 1.21490 0.95970 0.98136 1.02866 1.22295 0.96790 1.01090 0.98165 1.19648 0.80676 0.91166 0.99192 0.93073 1.21715 1.10877 1.34108 0.95349 0.92880 1.25658 0.94870 0.92995 1.03828 1.70818 1.42588 1.41885 0.98610 0.83674 0.75963 0.76702 0.74750 1.21422 1.21444 1.21195 1.62446 1.11829 1.49849 1.00278 1.22157 0.94487 0.98502 0.93248 1.21534 0.95710 1.00097 0.97603 1.22148 1.00047 1.00964 0.94845 1.22692 0.94943 0.93409 0.85932 0.89890 1.86115 1.27827 1.50972 1.56932 1.18778 0.85619 0.93213 0.92698 1.21697 0.96629 0.98541 1.03044 1.20886 0.94344 0.98964 0.95513 1.21022 1.00400 0.94783 0.97391 1.15622 0.93968 0.96123 0.94042 1.25630 0.93478 0.93354 0.93052 1.81253 1.08690 1.09061 1.10360 1.20350 0.94066 1.01805 0.96899 1.21835 0.89001 0.95804 0.99159 0.91622 0.93637 0.95694 0.95829 0.93309 0.91832 0.95633 0.91156 0.91688 0.91106 0.91326 0.91738 0.84170 0.84680 0.85036 0.84233 0.89153 0.94736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.67 9.38 37.16 0.35 -2.32 16 2 C -0.14 -2.99 4.52 -26.73 -0.12 -3.11 16 3 C 0.20 4.51 2.00 -68.87 -0.14 4.37 16 4 H 0.05 1.28 5.75 -51.93 -0.30 0.98 16 5 C -0.58 -14.86 7.53 -34.44 -0.26 -15.12 16 6 H 0.05 1.39 6.47 -52.48 -0.34 1.05 16 7 C 0.03 0.85 4.30 -17.82 -0.08 0.78 16 8 N -0.90 -25.17 13.63 55.43 0.76 -24.41 16 9 Si 1.06 24.02 29.93 -169.99 -5.09 18.93 16 10 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 11 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 12 H -0.29 -6.55 7.11 56.52 0.40 -6.14 16 13 N -0.52 -10.12 4.58 -228.09 -1.04 -11.16 16 14 C 0.04 0.73 5.17 -3.84 -0.02 0.71 16 15 C -0.11 -1.42 6.09 -26.65 -0.16 -1.58 16 16 C -0.14 -1.75 5.28 -26.61 -0.14 -1.89 16 17 C 0.09 1.23 2.27 -26.66 -0.06 1.17 16 18 H 0.08 1.18 6.31 -51.93 -0.33 0.85 16 19 O -0.31 -4.27 9.80 -19.47 -0.19 -4.46 16 20 C 0.14 1.68 6.59 -39.28 -0.26 1.42 16 21 C -0.18 -1.78 8.27 -39.35 -0.33 -2.10 16 22 C -0.08 -0.62 10.02 -39.67 -0.40 -1.02 16 23 C -0.12 -0.92 9.75 -39.15 -0.38 -1.30 16 24 C 0.01 0.06 5.73 -106.95 -0.61 -0.56 16 25 C 0.26 2.86 15.33 -22.47 -0.34 2.51 16 26 N -0.42 -5.46 18.54 41.84 0.78 -4.69 16 27 C -0.11 -1.17 9.69 -39.01 -0.38 -1.55 16 28 C 0.07 1.26 4.16 -3.83 -0.02 1.24 16 29 H 0.06 1.52 6.94 -51.93 -0.36 1.16 16 30 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.02 0.45 6.71 -51.93 -0.35 0.10 16 33 H 0.05 1.02 6.75 -51.92 -0.35 0.67 16 34 H 0.27 7.50 6.49 -40.82 -0.27 7.23 16 35 H 0.03 0.42 6.85 -51.93 -0.36 0.06 16 36 H 0.07 1.17 7.99 -51.93 -0.42 0.76 16 37 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 39 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 40 H 0.06 0.67 6.90 -51.92 -0.36 0.31 16 41 H 0.14 1.33 5.38 -52.48 -0.28 1.05 16 42 H 0.14 0.72 8.06 -52.49 -0.42 0.30 16 43 H 0.13 0.78 8.06 -52.49 -0.42 0.35 16 44 H 0.14 1.39 8.06 -52.49 -0.42 0.97 16 45 H 0.09 1.82 6.41 -51.93 -0.33 1.48 16 46 H 0.03 0.63 6.68 -51.93 -0.35 0.28 16 LS Contribution 364.41 15.07 5.49 5.49 Total: -1.00 -28.00 364.41 -9.20 -37.21 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: -6.56 Total: 1.44 kcal Atomic # 6 Polarization: -15.01 SS G_CDS: -3.34 Total: -18.36 kcal Atomic # 7 Polarization: -40.75 SS G_CDS: 0.49 Total: -40.26 kcal Atomic # 8 Polarization: -4.27 SS G_CDS: -0.19 Total: -4.46 kcal Atomic # 14 Polarization: 24.02 SS G_CDS: -5.09 Total: 18.93 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -28.00 -9.20 -37.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255174017.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.139 kcal (2) G-P(sol) polarization free energy of solvation -28.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.209 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds