Wall clock time and date at job start Tue Mar 31 2020 10:25:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47167 * 2 1 4 4 H 1.09001 * 109.47364 * 304.78730 * 3 2 1 5 5 C 1.50699 * 109.47163 * 64.78452 * 3 2 1 6 6 H 1.08007 * 120.00152 * 84.43460 * 5 3 2 7 7 C 1.37881 * 120.00371 * 264.42911 * 5 3 2 8 8 N 1.31514 * 119.99868 * 343.90957 * 7 5 3 9 9 Si 1.86799 * 119.99883 * 163.90303 * 7 5 3 10 10 H 1.48503 * 109.47206 * 270.00219 * 9 7 5 11 11 H 1.48496 * 109.47290 * 30.00707 * 9 7 5 12 12 H 1.48506 * 109.46832 * 150.00339 * 9 7 5 13 13 N 1.46896 * 109.47506 * 184.78958 * 3 2 1 14 14 C 1.46843 * 111.00170 * 72.05111 * 13 3 2 15 15 C 1.53037 * 109.52353 * 174.16417 * 14 13 3 16 16 C 1.53122 * 109.27770 * 59.17987 * 15 14 13 17 17 C 1.53111 * 109.16092 * 302.34637 * 16 15 14 18 18 H 1.09005 * 109.50504 * 297.66793 * 17 16 15 19 19 O 1.42907 * 109.50438 * 177.59733 * 17 16 15 20 20 C 1.35913 * 117.00276 * 84.99610 * 19 17 16 21 21 C 1.38859 * 119.97934 * 354.62997 * 20 19 17 22 22 C 1.38243 * 120.25167 * 179.97438 * 21 20 19 23 23 C 1.37997 * 120.21257 * 0.02562 * 22 21 20 24 24 C 1.39622 * 119.95488 * 0.02562 * 23 22 21 25 25 C 1.43202 * 120.12329 * 179.97438 * 24 23 22 26 26 N 9.55282 * 122.13517 * 322.21589 * 6 1 2 27 27 C 1.38432 * 119.98115 * 174.35330 * 20 19 17 28 28 C 1.46855 * 110.99676 * 307.84515 * 13 3 2 29 29 H 1.08991 * 109.47527 * 293.89537 * 1 2 3 30 30 H 1.09006 * 109.46791 * 53.89823 * 1 2 3 31 31 H 1.09003 * 109.47034 * 173.88928 * 1 2 3 32 32 H 1.08997 * 109.47696 * 239.99174 * 2 1 3 33 33 H 1.09009 * 109.46471 * 119.99628 * 2 1 3 34 34 H 0.96997 * 119.99954 * 358.29553 * 8 7 5 35 35 H 1.09003 * 109.46381 * 294.17809 * 14 13 3 36 36 H 1.09000 * 109.46141 * 54.15158 * 14 13 3 37 37 H 1.09007 * 109.50349 * 179.11902 * 15 14 13 38 38 H 1.08999 * 109.50505 * 299.19820 * 15 14 13 39 39 H 1.09001 * 109.52081 * 62.25185 * 16 15 14 40 40 H 1.09007 * 109.52396 * 182.37430 * 16 15 14 41 41 H 1.08003 * 119.87444 * 359.97438 * 21 20 19 42 42 H 1.08002 * 119.89679 * 180.02562 * 22 21 20 43 43 H 1.07994 * 120.02226 * 180.02562 * 23 22 21 44 44 H 1.07996 * 120.10870 * 359.97438 * 27 20 19 45 45 H 1.09005 * 109.46169 * 305.85346 * 28 13 3 46 46 H 1.08995 * 109.46169 * 65.81821 * 28 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6084 1.9805 -0.8440 5 6 1.6368 2.1178 1.2854 6 1 2.2457 2.0028 2.1700 7 6 0.4906 2.8828 1.3323 8 7 -0.0763 3.2870 0.2165 9 14 -0.2572 3.3448 2.9805 10 1 -1.2331 2.3034 3.3908 11 1 0.8172 3.4458 4.0007 12 1 -0.9501 4.6528 2.8604 13 7 3.5044 1.4441 -0.1156 14 6 3.9260 1.0588 -1.4684 15 6 5.4435 1.2116 -1.5943 16 6 6.1292 0.3225 -0.5531 17 6 5.6364 0.7122 0.8432 18 1 5.9165 1.7445 1.0531 19 8 6.2294 -0.1502 1.8163 20 6 7.4631 0.1911 2.2732 21 6 8.1364 1.2691 1.7140 22 6 9.3912 1.6215 2.1748 23 6 9.9837 0.9037 3.1936 24 6 9.3151 -0.1825 3.7614 25 6 9.9268 -0.9302 4.8185 26 7 10.4104 -1.5209 5.6597 27 6 8.0453 -0.5327 3.2996 28 6 4.1134 0.5738 0.8984 29 1 -0.3634 0.4162 0.9395 30 1 -0.3633 0.6056 -0.8304 31 1 -0.3633 -1.0219 -0.1094 32 1 1.8935 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 0.3256 3.0679 -0.6387 35 1 3.6490 0.0209 -1.6533 36 1 3.4345 1.7014 -2.1989 37 1 5.7579 0.9106 -2.5936 38 1 5.7198 2.2521 -1.4238 39 1 5.8841 -0.7216 -0.7477 40 1 7.2090 0.4602 -0.6110 41 1 7.6779 1.8345 0.9161 42 1 9.9095 2.4613 1.7360 43 1 10.9639 1.1820 3.5514 44 1 7.5206 -1.3683 3.7386 45 1 3.7579 0.8642 1.8871 46 1 3.8354 -0.4618 0.7025 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255174017.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:25:21 Heat of formation + Delta-G solvation = 0.300655 kcal Electronic energy + Delta-G solvation = -26091.975373 eV Core-core repulsion = 22560.098831 eV Total energy + Delta-G solvation = -3531.876542 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.56961 -40.11214 -38.74746 -37.31177 -36.28427 -33.74766 -32.49023 -32.18129 -31.82852 -30.32437 -27.99014 -25.78430 -25.29740 -24.25826 -23.78968 -23.20760 -22.19002 -20.46723 -20.20204 -18.49189 -17.70858 -17.65878 -16.97989 -16.55267 -16.25633 -16.01403 -15.60901 -15.41370 -15.20419 -15.01480 -14.93079 -14.83208 -14.55554 -14.23895 -14.09046 -13.86963 -13.79958 -13.58424 -13.25366 -12.84057 -12.75717 -12.64202 -12.56180 -12.42749 -12.34308 -12.05727 -11.98079 -11.83322 -11.61592 -11.58156 -11.45611 -11.18777 -10.75924 -10.16570 -10.02989 -9.24778 -8.88264 -8.49919 -6.13258 -0.28300 0.40636 1.48658 1.56905 1.61884 1.79778 1.88284 2.04849 2.60236 2.83976 2.85940 3.19046 3.49552 3.69282 3.79991 3.87769 3.97931 4.06976 4.13465 4.17339 4.27373 4.29731 4.35102 4.39646 4.52027 4.58208 4.62072 4.72724 4.77475 4.82665 4.89530 4.93516 4.98934 5.02631 5.07677 5.15523 5.19288 5.22740 5.32594 5.38542 5.40060 5.48147 5.52333 5.64166 5.97801 6.24097 6.35142 6.40974 6.52073 6.62798 6.83891 7.58327 8.87778 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.014914 B = 0.003299 C = 0.002995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1876.970126 B = 8485.259426 C = 9346.744959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.134 4.134 3 C 0.202 3.798 4 H 0.024 0.976 5 C -0.585 4.585 6 H 0.040 0.960 7 C -0.009 4.009 8 N -0.928 5.928 9 Si 1.097 2.903 10 H -0.277 1.277 11 H -0.277 1.277 12 H -0.288 1.288 13 N -0.532 5.532 14 C 0.042 3.958 15 C -0.103 4.103 16 C -0.133 4.133 17 C 0.097 3.903 18 H 0.083 0.917 19 O -0.325 6.325 20 C 0.117 3.883 21 C -0.179 4.179 22 C -0.071 4.071 23 C -0.099 4.099 24 C -0.001 4.001 25 C 0.282 3.718 26 N -0.459 5.459 27 C -0.117 4.117 28 C 0.076 3.924 29 H 0.040 0.960 30 H 0.030 0.970 31 H 0.054 0.946 32 H 0.040 0.960 33 H 0.045 0.955 34 H 0.259 0.741 35 H 0.025 0.975 36 H 0.061 0.939 37 H 0.094 0.906 38 H 0.073 0.927 39 H 0.065 0.935 40 H 0.092 0.908 41 H 0.146 0.854 42 H 0.170 0.830 43 H 0.159 0.841 44 H 0.136 0.864 45 H 0.058 0.942 46 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.212 -4.061 -1.930 18.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.174 4.174 3 C 0.095 3.905 4 H 0.042 0.958 5 C -0.623 4.623 6 H 0.059 0.941 7 C -0.209 4.209 8 N -0.566 5.566 9 Si 0.922 3.078 10 H -0.203 1.203 11 H -0.203 1.203 12 H -0.214 1.214 13 N -0.257 5.257 14 C -0.086 4.086 15 C -0.141 4.141 16 C -0.171 4.171 17 C 0.041 3.959 18 H 0.101 0.899 19 O -0.238 6.238 20 C 0.072 3.928 21 C -0.198 4.198 22 C -0.088 4.088 23 C -0.120 4.120 24 C -0.004 4.004 25 C -0.033 4.033 26 N -0.135 5.135 27 C -0.138 4.138 28 C -0.053 4.053 29 H 0.059 0.941 30 H 0.050 0.950 31 H 0.073 0.927 32 H 0.059 0.941 33 H 0.064 0.936 34 H 0.070 0.930 35 H 0.044 0.956 36 H 0.080 0.920 37 H 0.112 0.888 38 H 0.091 0.909 39 H 0.084 0.916 40 H 0.110 0.890 41 H 0.164 0.836 42 H 0.187 0.813 43 H 0.177 0.823 44 H 0.154 0.846 45 H 0.076 0.924 46 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 17.753 -3.863 0.203 18.170 hybrid contribution 0.154 -1.355 -1.204 1.819 sum 17.907 -5.217 -1.001 18.678 Atomic orbital electron populations 1.21406 0.96069 0.99438 1.00855 1.22138 0.96581 0.99959 0.98739 1.19432 0.82898 0.91528 0.96681 0.95800 1.21941 1.10559 1.33659 0.96150 0.94127 1.26700 0.95510 0.93121 1.05598 1.70915 1.43336 1.43652 0.98676 0.83182 0.75895 0.76564 0.72194 1.20269 1.20274 1.21387 1.62237 1.09935 1.51064 1.02476 1.22250 0.97280 0.98114 0.90924 1.21506 0.92590 1.00548 0.99406 1.22093 1.01529 1.00533 0.92924 1.22423 0.92306 0.93680 0.87535 0.89892 1.86054 1.29332 1.51111 1.57341 1.18941 0.85199 0.94803 0.93895 1.21871 0.97298 0.97689 1.02952 1.21252 0.93411 0.99362 0.94811 1.21386 1.01073 0.93198 0.96321 1.15647 0.93785 0.96900 0.94094 1.25765 0.92490 0.92486 0.92526 1.81275 1.10138 1.10340 1.11710 1.20366 0.94577 1.01920 0.96915 1.21692 0.91896 0.94751 0.96941 0.94099 0.95035 0.92722 0.94105 0.93600 0.92973 0.95636 0.92041 0.88752 0.90855 0.91592 0.88954 0.83625 0.81299 0.82335 0.84621 0.92375 0.95384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.10 9.38 71.98 0.68 -4.42 16 2 C -0.13 -5.66 4.52 30.59 0.14 -5.52 16 3 C 0.20 9.40 2.00 44.17 0.09 9.49 16 4 H 0.02 1.25 5.75 -2.39 -0.01 1.24 16 5 C -0.58 -30.76 7.53 25.60 0.19 -30.57 16 6 H 0.04 2.20 6.47 -2.91 -0.02 2.18 16 7 C -0.01 -0.47 4.30 84.66 0.36 -0.10 16 8 N -0.93 -53.27 13.63 21.45 0.29 -52.98 16 9 Si 1.10 49.12 29.93 68.60 2.05 51.17 16 10 H -0.28 -11.82 7.11 99.48 0.71 -11.12 16 11 H -0.28 -11.79 7.11 99.48 0.71 -11.09 16 12 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 13 N -0.53 -21.00 4.58 -875.53 -4.01 -25.01 16 14 C 0.04 1.35 5.17 86.33 0.45 1.79 16 15 C -0.10 -2.35 6.09 30.65 0.19 -2.17 16 16 C -0.13 -2.93 5.28 30.67 0.16 -2.77 16 17 C 0.10 2.67 2.27 30.64 0.07 2.74 16 18 H 0.08 2.26 6.31 -2.38 -0.02 2.25 16 19 O -0.32 -8.89 9.80 -92.57 -0.91 -9.79 16 20 C 0.12 2.57 6.59 22.46 0.15 2.72 16 21 C -0.18 -3.01 8.27 22.42 0.19 -2.83 16 22 C -0.07 -0.81 10.02 22.21 0.22 -0.59 16 23 C -0.10 -1.21 9.75 22.55 0.22 -0.99 16 24 C 0.00 -0.01 5.73 -21.37 -0.12 -0.14 16 25 C 0.28 5.83 15.33 88.33 1.35 7.18 16 26 N -0.46 -11.67 18.54 19.00 0.35 -11.32 16 27 C -0.12 -2.36 9.69 22.64 0.22 -2.14 16 28 C 0.08 2.74 4.16 86.32 0.36 3.09 16 29 H 0.04 1.91 6.94 -2.39 -0.02 1.90 16 30 H 0.03 1.39 8.14 -2.38 -0.02 1.37 16 31 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.04 1.56 6.71 -2.39 -0.02 1.55 16 33 H 0.05 1.94 6.75 -2.38 -0.02 1.93 16 34 H 0.26 15.02 6.49 -92.71 -0.60 14.42 16 35 H 0.03 0.81 6.85 -2.39 -0.02 0.79 16 36 H 0.06 2.04 7.99 -2.39 -0.02 2.02 16 37 H 0.09 1.67 8.14 -2.38 -0.02 1.65 16 38 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.09 1.57 6.90 -2.38 -0.02 1.55 16 41 H 0.15 2.28 5.38 -2.91 -0.02 2.27 16 42 H 0.17 0.86 8.06 -2.91 -0.02 0.84 16 43 H 0.16 1.13 8.06 -2.91 -0.02 1.10 16 44 H 0.14 2.73 8.06 -2.91 -0.02 2.71 16 45 H 0.06 2.44 6.41 -2.38 -0.02 2.42 16 46 H 0.03 1.03 6.68 -2.39 -0.02 1.02 16 Total: -1.00 -63.10 364.41 3.85 -59.25 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: 1.16 Total: 13.88 kcal Atomic # 6 Polarization: -30.13 SS G_CDS: 4.91 Total: -25.22 kcal Atomic # 7 Polarization: -85.93 SS G_CDS: -3.36 Total: -89.30 kcal Atomic # 8 Polarization: -8.89 SS G_CDS: -0.91 Total: -9.79 kcal Atomic # 14 Polarization: 49.12 SS G_CDS: 2.05 Total: 51.17 kcal Total: -63.10 3.85 -59.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255174017.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.555 kcal (2) G-P(sol) polarization free energy of solvation -63.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.254 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds