Wall clock time and date at job start Tue Mar 31 2020 10:25:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.47275 * 2 1 4 4 H 1.09006 * 109.46671 * 55.00056 * 3 2 1 5 5 C 1.50699 * 109.47052 * 174.99863 * 3 2 1 6 6 H 1.07999 * 119.99777 * 119.99998 * 5 3 2 7 7 C 1.37872 * 120.00146 * 300.00450 * 5 3 2 8 8 N 1.31514 * 120.00226 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 120.00009 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.46899 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47406 * 119.99540 * 9 7 5 12 12 H 1.48500 * 109.47090 * 239.99732 * 9 7 5 13 13 N 1.46891 * 109.46885 * 295.00410 * 3 2 1 14 14 C 1.46849 * 110.99944 * 299.20424 * 13 3 2 15 15 C 1.53046 * 109.52305 * 174.16537 * 14 13 3 16 16 C 1.53119 * 109.30863 * 59.15959 * 15 14 13 17 17 C 1.53122 * 109.16132 * 302.40580 * 16 15 14 18 18 H 1.09001 * 109.49808 * 297.63429 * 17 16 15 19 19 O 1.42897 * 109.50324 * 177.55899 * 17 16 15 20 20 C 1.35757 * 117.00436 * 84.85452 * 19 17 16 21 21 C 1.38967 * 119.89982 * 354.62578 * 20 19 17 22 22 C 1.37736 * 120.09070 * 180.02562 * 21 20 19 23 23 C 1.39752 * 119.90523 * 359.97438 * 22 21 20 24 24 C 1.43206 * 120.09406 * 179.72458 * 23 22 21 25 25 N 9.74860 * 123.97766 * 179.15794 * 13 1 2 26 26 C 1.39748 * 119.81492 * 0.02562 * 23 22 21 27 27 C 1.37735 * 119.90557 * 359.96848 * 26 23 22 28 28 C 1.46854 * 110.99929 * 175.00139 * 13 3 2 29 29 H 1.08995 * 109.47168 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47147 * 299.99760 * 1 2 3 31 31 H 1.08994 * 109.46906 * 59.99747 * 1 2 3 32 32 H 1.08999 * 109.47147 * 240.00240 * 2 1 3 33 33 H 1.08999 * 109.47287 * 119.99969 * 2 1 3 34 34 H 0.96999 * 120.00231 * 180.02562 * 8 7 5 35 35 H 1.09003 * 109.46271 * 294.18139 * 14 13 3 36 36 H 1.08993 * 109.46172 * 54.16248 * 14 13 3 37 37 H 1.08994 * 109.50043 * 179.12030 * 15 14 13 38 38 H 1.08999 * 109.50418 * 299.20203 * 15 14 13 39 39 H 1.08999 * 109.55594 * 182.47782 * 16 15 14 40 40 H 1.09005 * 109.49460 * 62.28932 * 16 15 14 41 41 H 1.07993 * 119.95688 * 0.02562 * 21 20 19 42 42 H 1.08006 * 120.04613 * 180.02562 * 22 21 20 43 43 H 1.08004 * 120.05446 * 179.97438 * 26 23 22 44 44 H 1.08001 * 119.95871 * 180.02562 * 27 26 23 45 45 H 1.08999 * 109.46547 * 65.81783 * 28 13 3 46 46 H 1.09003 * 109.44742 * 305.84925 * 28 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4443 0.1239 6 1 4.1472 1.8888 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 3.4062 0.3373 2.1733 9 14 6.0050 0.8811 1.3818 10 1 6.5987 1.5462 0.1942 11 1 6.3991 1.6166 2.6102 12 1 6.4971 -0.5176 1.4629 13 7 1.6514 2.0993 -1.2551 14 6 2.2355 1.4098 -2.4127 15 6 1.6948 2.0293 -3.7034 16 6 2.0517 3.5179 -3.7388 17 6 1.4736 4.2030 -2.4974 18 1 0.3866 4.1231 -2.5108 19 8 1.8506 5.5814 -2.4940 20 6 1.0688 6.4360 -3.2021 21 6 0.0266 5.9412 -3.9768 22 6 -0.7687 6.8047 -4.6971 23 6 -0.5267 8.1802 -4.6478 24 6 -1.3474 9.0812 -5.3998 25 7 -1.9992 9.7959 -5.9953 26 6 0.5225 8.6735 -3.8674 27 6 1.3129 7.8031 -3.1501 28 6 2.0207 3.5205 -1.2418 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.8293 -0.0605 2.9502 35 1 3.3204 1.5126 -2.3872 36 1 1.9699 0.3533 -2.3781 37 1 2.1405 1.5277 -4.5623 38 1 0.6114 1.9140 -3.7364 39 1 1.6306 3.9729 -4.6353 40 1 3.1357 3.6320 -3.7461 41 1 -0.1601 4.8782 -4.0140 42 1 -1.5788 6.4194 -5.2987 43 1 0.7133 9.7358 -3.8268 44 1 2.1237 8.1834 -2.5464 45 1 3.1066 3.6135 -1.2218 46 1 1.5991 3.9968 -0.3565 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255177293.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:25:54 Heat of formation + Delta-G solvation = 13.700093 kcal Electronic energy + Delta-G solvation = -26008.494720 eV Core-core repulsion = 22477.199221 eV Total energy + Delta-G solvation = -3531.295499 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.62104 -38.82211 -37.57103 -36.25238 -34.43114 -31.99138 -31.45698 -31.03962 -30.63371 -29.27525 -26.65923 -24.24499 -23.89339 -23.34626 -22.29720 -22.05371 -19.92199 -19.19513 -19.00612 -18.02642 -16.34574 -16.32965 -15.60966 -15.13936 -15.02875 -14.50950 -14.35238 -14.24323 -14.07942 -13.81998 -13.57264 -13.44665 -13.25514 -12.83904 -12.81917 -12.75843 -12.31762 -12.24234 -12.04453 -11.67741 -11.42107 -11.34025 -11.23836 -10.98007 -10.81185 -10.64257 -10.49267 -10.36927 -10.19526 -9.80826 -9.73862 -9.47640 -9.37498 -9.16751 -8.42955 -8.37706 -7.28311 -6.06150 -4.19630 0.63564 1.03744 2.48197 2.74854 3.04856 3.21443 3.30766 3.33380 3.64848 3.73354 4.34054 4.49215 4.57445 4.83898 4.84388 4.93848 5.08945 5.15955 5.19010 5.23512 5.35995 5.42992 5.61019 5.67454 5.80893 5.85678 6.01773 6.05456 6.08104 6.08228 6.21464 6.22465 6.34946 6.37604 6.39330 6.52097 6.58401 6.63885 6.74823 7.02404 7.11211 7.22250 7.29510 7.34717 7.53007 7.68717 7.85325 8.04941 8.19025 8.36061 8.89241 9.48532 10.93371 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.020523 B = 0.002952 C = 0.002774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.007504 B = 9482.237319 C =10090.899663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.113 4.113 3 C 0.217 3.783 4 H 0.041 0.959 5 C -0.545 4.545 6 H 0.057 0.943 7 C 0.069 3.931 8 N -0.884 5.884 9 Si 0.886 3.114 10 H -0.275 1.275 11 H -0.284 1.284 12 H -0.284 1.284 13 N -0.529 5.529 14 C 0.054 3.946 15 C -0.114 4.114 16 C -0.142 4.142 17 C 0.085 3.915 18 H 0.081 0.919 19 O -0.302 6.302 20 C 0.177 3.823 21 C -0.215 4.215 22 C -0.026 4.026 23 C -0.086 4.086 24 C 0.264 3.736 25 N -0.434 5.434 26 C -0.029 4.029 27 C -0.160 4.160 28 C 0.071 3.929 29 H 0.025 0.975 30 H 0.039 0.961 31 H 0.047 0.953 32 H 0.034 0.966 33 H 0.094 0.906 34 H 0.261 0.739 35 H 0.040 0.960 36 H 0.076 0.924 37 H 0.063 0.937 38 H 0.065 0.935 39 H 0.062 0.938 40 H 0.070 0.930 41 H 0.144 0.856 42 H 0.133 0.867 43 H 0.137 0.863 44 H 0.142 0.858 45 H 0.050 0.950 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.991 8.311 -10.851 14.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.151 4.151 3 C 0.111 3.889 4 H 0.058 0.942 5 C -0.584 4.584 6 H 0.075 0.925 7 C -0.133 4.133 8 N -0.522 5.522 9 Si 0.714 3.286 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.210 1.210 13 N -0.254 5.254 14 C -0.075 4.075 15 C -0.152 4.152 16 C -0.180 4.180 17 C 0.030 3.970 18 H 0.099 0.901 19 O -0.213 6.213 20 C 0.129 3.871 21 C -0.233 4.233 22 C -0.046 4.046 23 C -0.090 4.090 24 C -0.050 4.050 25 N -0.110 5.110 26 C -0.050 4.050 27 C -0.179 4.179 28 C -0.057 4.057 29 H 0.045 0.955 30 H 0.059 0.941 31 H 0.066 0.934 32 H 0.053 0.947 33 H 0.112 0.888 34 H 0.071 0.929 35 H 0.059 0.941 36 H 0.095 0.905 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.080 0.920 40 H 0.089 0.911 41 H 0.161 0.839 42 H 0.151 0.849 43 H 0.154 0.846 44 H 0.159 0.841 45 H 0.068 0.932 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -6.314 9.316 -11.499 16.090 hybrid contribution 2.123 -0.430 0.408 2.204 sum -4.191 8.886 -11.091 14.817 Atomic orbital electron populations 1.21716 0.98772 0.98526 1.00611 1.21648 0.92315 0.98981 1.02159 1.19286 0.93256 0.91139 0.85233 0.94151 1.21738 0.92714 1.38295 1.05615 0.92487 1.24895 0.97855 0.94941 0.95647 1.69872 1.34770 1.38195 1.09388 0.86631 0.86140 0.77736 0.78048 1.19926 1.20977 1.21001 1.62349 1.58356 0.99869 1.04870 1.22017 0.97607 0.98662 0.89182 1.21595 1.01430 0.93772 0.98414 1.22143 1.02075 0.96884 0.96879 1.22747 1.00053 0.76615 0.97634 0.90126 1.86117 1.50017 1.19404 1.65750 1.19398 0.88597 0.90387 0.88734 1.21361 0.98458 1.01421 1.02108 1.20937 0.97286 0.90721 0.95675 1.15878 0.98755 0.90800 1.03567 1.25702 0.93088 0.93205 0.93043 1.81248 1.09992 1.09358 1.10435 1.20921 0.91630 0.99919 0.92488 1.20400 1.03303 0.89898 1.04288 1.21723 0.99613 0.90311 0.94088 0.95536 0.94138 0.93413 0.94688 0.88805 0.92865 0.94138 0.90543 0.91805 0.91623 0.91959 0.91112 0.83861 0.84906 0.84557 0.84063 0.93221 0.90801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.61 9.80 37.16 0.36 -2.25 16 2 C -0.11 -2.47 5.06 -26.73 -0.14 -2.61 16 3 C 0.22 4.91 1.75 -68.87 -0.12 4.79 16 4 H 0.04 1.03 8.08 -51.93 -0.42 0.61 16 5 C -0.54 -13.62 7.19 -34.44 -0.25 -13.87 16 6 H 0.06 1.44 5.84 -52.49 -0.31 1.14 16 7 C 0.07 1.80 5.29 -17.82 -0.09 1.70 16 8 N -0.88 -23.76 11.29 55.43 0.63 -23.13 16 9 Si 0.89 20.33 29.54 -169.99 -5.02 15.31 16 10 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 11 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 12 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 13 N -0.53 -9.89 4.10 -228.07 -0.93 -10.82 16 14 C 0.05 0.92 4.80 -3.83 -0.02 0.90 16 15 C -0.11 -1.49 6.09 -26.65 -0.16 -1.65 16 16 C -0.14 -1.78 5.28 -26.61 -0.14 -1.92 16 17 C 0.09 1.17 2.27 -26.65 -0.06 1.11 16 18 H 0.08 1.04 6.31 -51.93 -0.33 0.71 16 19 O -0.30 -4.04 9.79 -18.98 -0.19 -4.23 16 20 C 0.18 1.95 6.61 -39.04 -0.26 1.69 16 21 C -0.21 -2.05 8.24 -39.49 -0.33 -2.38 16 22 C -0.03 -0.22 9.75 -39.20 -0.38 -0.60 16 23 C -0.09 -0.77 5.74 -106.84 -0.61 -1.38 16 24 C 0.26 2.76 15.33 -22.47 -0.34 2.42 16 25 N -0.43 -5.52 18.54 41.84 0.78 -4.74 16 26 C -0.03 -0.23 9.75 -39.20 -0.38 -0.62 16 27 C -0.16 -1.49 9.97 -39.50 -0.39 -1.88 16 28 C 0.07 1.25 4.77 -3.83 -0.02 1.23 16 29 H 0.03 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.05 0.85 7.75 -51.93 -0.40 0.44 16 32 H 0.03 0.75 6.05 -51.93 -0.31 0.43 16 33 H 0.09 2.35 5.95 -51.93 -0.31 2.04 16 34 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 35 H 0.04 0.77 6.62 -51.93 -0.34 0.43 16 36 H 0.08 1.35 5.93 -51.93 -0.31 1.04 16 37 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 39 H 0.06 0.66 6.87 -51.93 -0.36 0.31 16 40 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.14 1.29 5.37 -52.49 -0.28 1.01 16 42 H 0.13 0.87 8.06 -52.48 -0.42 0.45 16 43 H 0.14 0.81 8.06 -52.48 -0.42 0.38 16 44 H 0.14 1.16 8.06 -52.49 -0.42 0.73 16 45 H 0.05 0.97 6.96 -51.93 -0.36 0.61 16 46 H 0.07 1.34 8.08 -51.93 -0.42 0.92 16 LS Contribution 365.28 15.07 5.50 5.50 Total: -1.00 -27.02 365.28 -9.24 -36.25 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: -6.67 Total: 1.17 kcal Atomic # 6 Polarization: -11.98 SS G_CDS: -3.33 Total: -15.31 kcal Atomic # 7 Polarization: -39.16 SS G_CDS: 0.47 Total: -38.70 kcal Atomic # 8 Polarization: -4.04 SS G_CDS: -0.19 Total: -4.23 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -27.02 -9.24 -36.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255177293.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.953 kcal (2) G-P(sol) polarization free energy of solvation -27.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.253 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds