Wall clock time and date at job start Tue Mar 31 2020 10:26:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46935 * 2 1 4 4 H 1.09001 * 109.46910 * 303.45801 * 3 2 1 5 5 C 1.50703 * 109.46965 * 183.46177 * 3 2 1 6 6 H 1.08005 * 119.99521 * 239.99917 * 5 3 2 7 7 C 1.37876 * 120.00449 * 59.99455 * 5 3 2 8 8 N 1.31514 * 119.99684 * 0.02562 * 7 5 3 9 9 Si 1.86794 * 120.00374 * 180.02562 * 7 5 3 10 10 H 1.48505 * 109.46833 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.47268 * 119.99834 * 9 7 5 12 12 H 1.48502 * 109.47118 * 240.00309 * 9 7 5 13 13 N 1.46894 * 109.47514 * 63.45832 * 3 2 1 14 14 C 1.47900 * 111.00225 * 181.68498 * 13 3 2 15 15 C 1.53994 * 107.05974 * 214.15446 * 14 13 3 16 16 C 1.54597 * 105.13836 * 1.22690 * 15 14 13 17 17 H 1.09001 * 110.72410 * 263.60007 * 16 15 14 18 18 N 1.46498 * 110.72216 * 140.49077 * 16 15 14 19 19 C 1.46734 * 125.62365 * 121.17059 * 18 16 15 20 20 C 1.50826 * 106.25381 * 179.85032 * 19 18 16 21 21 C 1.37578 * 133.24117 * 180.12287 * 20 19 18 22 22 C 1.38470 * 119.95753 * 180.31347 * 21 20 19 23 23 C 1.38381 * 120.18534 * 359.97438 * 22 21 20 24 24 C 1.37942 * 120.32571 * 0.02562 * 23 22 21 25 25 C 1.39618 * 119.82422 * 359.97438 * 24 23 22 26 26 C 1.34422 * 125.62650 * 301.47808 * 18 16 15 27 27 O 1.21548 * 124.85576 * 359.97438 * 26 18 16 28 28 C 1.48535 * 111.00033 * 64.28955 * 13 3 2 29 29 H 1.09008 * 109.47261 * 294.76435 * 1 2 3 30 30 H 1.09000 * 109.47429 * 54.76587 * 1 2 3 31 31 H 1.09000 * 109.47230 * 174.76595 * 1 2 3 32 32 H 1.09000 * 109.46956 * 240.00113 * 2 1 3 33 33 H 1.08996 * 109.46941 * 120.00034 * 2 1 3 34 34 H 0.96998 * 120.00073 * 179.97438 * 8 7 5 35 35 H 1.08991 * 109.91689 * 333.51120 * 14 13 3 36 36 H 1.09008 * 109.91241 * 94.60641 * 14 13 3 37 37 H 1.08995 * 110.30842 * 120.14234 * 15 14 13 38 38 H 1.08999 * 110.30711 * 242.30999 * 15 14 13 39 39 H 1.09001 * 110.09966 * 299.20166 * 19 18 16 40 40 H 1.09006 * 110.09693 * 60.80465 * 19 18 16 41 41 H 1.07998 * 120.02226 * 0.29075 * 21 20 19 42 42 H 1.07997 * 119.90415 * 179.97438 * 22 21 20 43 43 H 1.08001 * 119.83670 * 179.97438 * 23 22 21 44 44 H 1.07999 * 120.08643 * 179.97438 * 24 23 22 45 45 H 1.08996 * 110.66429 * 278.15780 * 28 13 3 46 46 H 1.09003 * 110.66566 * 41.28518 * 28 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6269 1.9739 -0.8574 5 6 3.5445 1.4434 -0.0858 6 1 4.1300 1.8950 0.7015 7 6 4.1737 0.8676 -1.1691 8 7 3.4607 0.3181 -2.1279 9 14 6.0386 0.8681 -1.2751 10 1 6.6022 1.5430 -0.0784 11 1 6.5316 -0.5316 -1.3315 12 1 6.4647 1.5927 -2.4993 13 7 1.6197 2.1105 1.2389 14 6 2.0614 3.5219 1.2562 15 6 2.3912 3.8742 2.7186 16 6 2.1399 2.5726 3.5140 17 1 1.1447 2.5783 3.9587 18 7 3.1650 2.3885 4.5443 19 6 2.9167 2.2723 5.9858 20 6 4.2670 2.0936 6.6336 21 6 4.6724 1.9317 7.9383 22 6 6.0186 1.7944 8.2321 23 6 6.9584 1.8189 7.2167 24 6 6.5627 1.9807 5.9052 25 6 5.2072 2.1198 5.6010 26 6 4.4886 2.3041 4.3256 27 8 5.0178 2.3692 3.2333 28 6 2.2477 1.4752 2.4256 29 1 -0.3634 0.4305 0.9332 30 1 -0.3634 0.5929 -0.8394 31 1 -0.3634 -1.0234 -0.0937 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.9033 -0.0867 -2.8903 35 1 2.9499 3.6405 0.6362 36 1 1.2626 4.1654 0.8872 37 1 3.4343 4.1772 2.8087 38 1 1.7339 4.6677 3.0741 39 1 2.4374 3.1779 6.3575 40 1 2.2885 1.4050 6.1890 41 1 3.9412 1.9121 8.7329 42 1 6.3359 1.6677 9.2566 43 1 8.0069 1.7117 7.4523 44 1 7.2995 1.9997 5.1158 45 1 1.6952 0.5836 2.7222 46 1 3.2915 1.2333 2.2252 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255177940.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:26:03 Heat of formation + Delta-G solvation = 19.299337 kcal Electronic energy + Delta-G solvation = -27040.842771 eV Core-core repulsion = 23509.790073 eV Total energy + Delta-G solvation = -3531.052697 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.14715 -38.74230 -37.48643 -35.86919 -34.03869 -31.73837 -31.25185 -31.06799 -28.97746 -27.79992 -26.67477 -26.02238 -23.75697 -22.89078 -21.90657 -21.24179 -20.51088 -19.19607 -18.92016 -17.00095 -16.46407 -16.35181 -16.05749 -15.65687 -14.94596 -14.80334 -14.40891 -14.16713 -13.72292 -13.40760 -13.27781 -13.21137 -12.97811 -12.76236 -12.67268 -12.54472 -12.23354 -12.00471 -11.53992 -11.25465 -11.16782 -11.08909 -10.89578 -10.70609 -10.61037 -10.45661 -10.29514 -9.84100 -9.57369 -9.44809 -9.35238 -9.19907 -9.04362 -8.94598 -8.44234 -8.24713 -7.14472 -5.87636 -3.97519 0.70069 1.10258 2.89241 2.92317 3.36972 3.45098 3.58176 3.77318 3.99954 4.39778 4.55260 4.69398 4.77308 5.07638 5.09253 5.13140 5.22995 5.27505 5.32011 5.38782 5.41925 5.51914 5.56336 5.74849 5.86184 6.03016 6.08883 6.10900 6.20081 6.32672 6.38749 6.49102 6.54288 6.59981 6.63880 6.71622 6.75661 6.96001 7.08258 7.13149 7.21857 7.26825 7.37455 7.67637 7.85909 8.02911 8.24080 8.28014 8.42454 8.54465 9.14793 9.69874 11.12783 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.014509 B = 0.004548 C = 0.003819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1929.313417 B = 6155.324497 C = 7330.869880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.110 4.110 3 C 0.205 3.795 4 H 0.039 0.961 5 C -0.538 4.538 6 H 0.071 0.929 7 C 0.068 3.932 8 N -0.890 5.890 9 Si 0.881 3.119 10 H -0.268 1.268 11 H -0.286 1.286 12 H -0.286 1.286 13 N -0.511 5.511 14 C 0.042 3.958 15 C -0.136 4.136 16 C 0.158 3.842 17 H 0.097 0.903 18 N -0.607 5.607 19 C 0.142 3.858 20 C -0.085 4.085 21 C -0.105 4.105 22 C -0.095 4.095 23 C -0.129 4.129 24 C -0.049 4.049 25 C -0.149 4.149 26 C 0.548 3.452 27 O -0.496 6.496 28 C 0.028 3.972 29 H 0.044 0.956 30 H 0.040 0.960 31 H 0.024 0.976 32 H 0.092 0.908 33 H 0.029 0.971 34 H 0.258 0.742 35 H 0.064 0.936 36 H 0.060 0.940 37 H 0.070 0.930 38 H 0.062 0.938 39 H 0.092 0.908 40 H 0.093 0.907 41 H 0.129 0.871 42 H 0.130 0.870 43 H 0.130 0.870 44 H 0.132 0.868 45 H 0.065 0.935 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.308 3.864 21.242 21.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.148 4.148 3 C 0.098 3.902 4 H 0.057 0.943 5 C -0.577 4.577 6 H 0.089 0.911 7 C -0.134 4.134 8 N -0.529 5.529 9 Si 0.709 3.291 10 H -0.192 1.192 11 H -0.212 1.212 12 H -0.212 1.212 13 N -0.236 5.236 14 C -0.087 4.087 15 C -0.175 4.175 16 C 0.057 3.943 17 H 0.115 0.885 18 N -0.341 5.341 19 C 0.019 3.981 20 C -0.086 4.086 21 C -0.124 4.124 22 C -0.113 4.113 23 C -0.147 4.147 24 C -0.068 4.068 25 C -0.152 4.152 26 C 0.336 3.664 27 O -0.371 6.371 28 C -0.101 4.101 29 H 0.063 0.937 30 H 0.059 0.941 31 H 0.043 0.957 32 H 0.110 0.890 33 H 0.048 0.952 34 H 0.068 0.932 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.089 0.911 38 H 0.080 0.920 39 H 0.110 0.890 40 H 0.111 0.889 41 H 0.147 0.853 42 H 0.148 0.852 43 H 0.148 0.852 44 H 0.150 0.850 45 H 0.083 0.917 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -0.682 3.785 20.366 20.726 hybrid contribution 1.966 -0.069 -0.115 1.971 sum 1.284 3.717 20.251 20.629 Atomic orbital electron populations 1.21700 0.98894 0.98298 1.00458 1.21566 0.92099 0.99198 1.01957 1.19425 0.93269 0.91082 0.86399 0.94298 1.21935 0.92554 1.37025 1.06174 0.91120 1.24873 0.97772 0.95108 0.95612 1.69896 1.34725 1.38519 1.09774 0.86678 0.86702 0.77637 0.78084 1.19229 1.21232 1.21234 1.65169 1.53332 1.01077 1.04001 1.22641 0.99927 0.91856 0.94294 1.22715 1.01826 0.96335 0.96579 1.22043 0.88643 0.96875 0.86771 0.88482 1.48010 1.06750 1.72891 1.06466 1.20439 0.94165 1.02897 0.80612 1.20532 0.95612 0.98558 0.93915 1.20270 0.96171 1.01537 0.94375 1.21274 0.92614 0.97969 0.99487 1.21120 1.00055 1.01264 0.92267 1.20930 0.94131 0.94924 0.96863 1.20644 0.94540 1.04797 0.95217 1.18267 0.82389 0.77526 0.88267 1.90905 1.71135 1.48228 1.26824 1.23447 1.01643 0.95194 0.89801 0.93683 0.94120 0.95677 0.88956 0.95189 0.93197 0.91757 0.92150 0.91148 0.91963 0.88988 0.88877 0.85303 0.85222 0.85202 0.85048 0.91672 0.89841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.83 9.72 37.16 0.36 -2.46 16 2 C -0.11 -2.68 5.14 -26.73 -0.14 -2.82 16 3 C 0.21 5.22 1.80 -68.87 -0.12 5.09 16 4 H 0.04 1.10 8.14 -51.93 -0.42 0.67 16 5 C -0.54 -15.12 6.36 -34.44 -0.22 -15.34 16 6 H 0.07 2.10 6.02 -52.48 -0.32 1.78 16 7 C 0.07 1.95 5.30 -17.82 -0.09 1.85 16 8 N -0.89 -25.96 11.30 55.43 0.63 -25.33 16 9 Si 0.88 22.75 29.54 -169.99 -5.02 17.73 16 10 H -0.27 -7.15 7.11 56.52 0.40 -6.75 16 11 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 12 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 13 N -0.51 -11.09 4.77 -223.89 -1.07 -12.16 16 14 C 0.04 0.84 6.35 -2.75 -0.02 0.82 16 15 C -0.14 -2.32 6.45 -25.37 -0.16 -2.48 16 16 C 0.16 2.57 3.79 -66.07 -0.25 2.32 16 17 H 0.10 1.32 8.13 -51.93 -0.42 0.90 16 18 N -0.61 -9.20 2.97 -166.42 -0.49 -9.69 16 19 C 0.14 1.49 7.37 -5.00 -0.04 1.46 16 20 C -0.08 -0.95 6.38 -104.27 -0.66 -1.61 16 21 C -0.11 -0.89 10.03 -39.74 -0.40 -1.29 16 22 C -0.10 -0.76 10.05 -39.44 -0.40 -1.16 16 23 C -0.13 -1.21 10.02 -39.64 -0.40 -1.60 16 24 C -0.05 -0.62 10.10 -39.18 -0.40 -1.02 16 25 C -0.15 -2.14 6.26 -105.05 -0.66 -2.80 16 26 C 0.55 9.85 7.06 -12.62 -0.09 9.76 16 27 O -0.50 -11.34 15.41 5.32 0.08 -11.25 16 28 C 0.03 0.57 4.86 -1.90 -0.01 0.56 16 29 H 0.04 0.88 7.86 -51.92 -0.41 0.47 16 30 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.09 2.53 5.99 -51.93 -0.31 2.22 16 33 H 0.03 0.73 6.89 -51.93 -0.36 0.37 16 34 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 35 H 0.06 1.51 6.41 -51.93 -0.33 1.18 16 36 H 0.06 1.12 8.14 -51.92 -0.42 0.70 16 37 H 0.07 1.34 6.76 -51.93 -0.35 0.99 16 38 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 39 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 42 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 43 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 44 H 0.13 1.66 8.06 -52.49 -0.42 1.23 16 45 H 0.06 1.29 7.60 -51.93 -0.39 0.89 16 46 H 0.08 2.05 4.20 -51.93 -0.22 1.83 16 LS Contribution 359.74 15.07 5.42 5.42 Total: -1.00 -32.73 359.74 -11.04 -43.77 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: -6.90 Total: 2.23 kcal Atomic # 6 Polarization: -7.03 SS G_CDS: -3.69 Total: -10.72 kcal Atomic # 7 Polarization: -46.25 SS G_CDS: -0.94 Total: -47.19 kcal Atomic # 8 Polarization: -11.34 SS G_CDS: 0.08 Total: -11.25 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -5.02 Total: 17.73 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.73 -11.04 -43.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255177940.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.073 kcal (2) G-P(sol) polarization free energy of solvation -32.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.773 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds