Wall clock time and date at job start Tue Mar 31 2020 10:26:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46935 * 2 1 4 4 H 1.09001 * 109.46910 * 303.45801 * 3 2 1 5 5 C 1.50703 * 109.46965 * 183.46177 * 3 2 1 6 6 H 1.08005 * 119.99521 * 239.99917 * 5 3 2 7 7 C 1.37876 * 120.00449 * 59.99455 * 5 3 2 8 8 N 1.31514 * 119.99684 * 0.02562 * 7 5 3 9 9 Si 1.86794 * 120.00374 * 180.02562 * 7 5 3 10 10 H 1.48505 * 109.46833 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.47268 * 119.99834 * 9 7 5 12 12 H 1.48502 * 109.47118 * 240.00309 * 9 7 5 13 13 N 1.46894 * 109.47514 * 63.45832 * 3 2 1 14 14 C 1.47900 * 111.00225 * 181.68498 * 13 3 2 15 15 C 1.53994 * 107.05974 * 214.15446 * 14 13 3 16 16 C 1.54597 * 105.13836 * 1.22690 * 15 14 13 17 17 H 1.09001 * 110.72410 * 263.60007 * 16 15 14 18 18 N 1.46498 * 110.72216 * 140.49077 * 16 15 14 19 19 C 1.46734 * 125.62365 * 121.17059 * 18 16 15 20 20 C 1.50826 * 106.25381 * 179.85032 * 19 18 16 21 21 C 1.37578 * 133.24117 * 180.12287 * 20 19 18 22 22 C 1.38470 * 119.95753 * 180.31347 * 21 20 19 23 23 C 1.38381 * 120.18534 * 359.97438 * 22 21 20 24 24 C 1.37942 * 120.32571 * 0.02562 * 23 22 21 25 25 C 1.39618 * 119.82422 * 359.97438 * 24 23 22 26 26 C 1.34422 * 125.62650 * 301.47808 * 18 16 15 27 27 O 1.21548 * 124.85576 * 359.97438 * 26 18 16 28 28 C 1.48535 * 111.00033 * 64.28955 * 13 3 2 29 29 H 1.09008 * 109.47261 * 294.76435 * 1 2 3 30 30 H 1.09000 * 109.47429 * 54.76587 * 1 2 3 31 31 H 1.09000 * 109.47230 * 174.76595 * 1 2 3 32 32 H 1.09000 * 109.46956 * 240.00113 * 2 1 3 33 33 H 1.08996 * 109.46941 * 120.00034 * 2 1 3 34 34 H 0.96998 * 120.00073 * 179.97438 * 8 7 5 35 35 H 1.08991 * 109.91689 * 333.51120 * 14 13 3 36 36 H 1.09008 * 109.91241 * 94.60641 * 14 13 3 37 37 H 1.08995 * 110.30842 * 120.14234 * 15 14 13 38 38 H 1.08999 * 110.30711 * 242.30999 * 15 14 13 39 39 H 1.09001 * 110.09966 * 299.20166 * 19 18 16 40 40 H 1.09006 * 110.09693 * 60.80465 * 19 18 16 41 41 H 1.07998 * 120.02226 * 0.29075 * 21 20 19 42 42 H 1.07997 * 119.90415 * 179.97438 * 22 21 20 43 43 H 1.08001 * 119.83670 * 179.97438 * 23 22 21 44 44 H 1.07999 * 120.08643 * 179.97438 * 24 23 22 45 45 H 1.08996 * 110.66429 * 278.15780 * 28 13 3 46 46 H 1.09003 * 110.66566 * 41.28518 * 28 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6269 1.9739 -0.8574 5 6 3.5445 1.4434 -0.0858 6 1 4.1300 1.8950 0.7015 7 6 4.1737 0.8676 -1.1691 8 7 3.4607 0.3181 -2.1279 9 14 6.0386 0.8681 -1.2751 10 1 6.6022 1.5430 -0.0784 11 1 6.5316 -0.5316 -1.3315 12 1 6.4647 1.5927 -2.4993 13 7 1.6197 2.1105 1.2389 14 6 2.0614 3.5219 1.2562 15 6 2.3912 3.8742 2.7186 16 6 2.1399 2.5726 3.5140 17 1 1.1447 2.5783 3.9587 18 7 3.1650 2.3885 4.5443 19 6 2.9167 2.2723 5.9858 20 6 4.2670 2.0936 6.6336 21 6 4.6724 1.9317 7.9383 22 6 6.0186 1.7944 8.2321 23 6 6.9584 1.8189 7.2167 24 6 6.5627 1.9807 5.9052 25 6 5.2072 2.1198 5.6010 26 6 4.4886 2.3041 4.3256 27 8 5.0178 2.3692 3.2333 28 6 2.2477 1.4752 2.4256 29 1 -0.3634 0.4305 0.9332 30 1 -0.3634 0.5929 -0.8394 31 1 -0.3634 -1.0234 -0.0937 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.9033 -0.0867 -2.8903 35 1 2.9499 3.6405 0.6362 36 1 1.2626 4.1654 0.8872 37 1 3.4343 4.1772 2.8087 38 1 1.7339 4.6677 3.0741 39 1 2.4374 3.1779 6.3575 40 1 2.2885 1.4050 6.1890 41 1 3.9412 1.9121 8.7329 42 1 6.3359 1.6677 9.2566 43 1 8.0069 1.7117 7.4523 44 1 7.2995 1.9997 5.1158 45 1 1.6952 0.5836 2.7222 46 1 3.2915 1.2333 2.2252 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255177940.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:26:02 Heat of formation + Delta-G solvation = -2.047303 kcal Electronic energy + Delta-G solvation = -27041.768430 eV Core-core repulsion = 23509.790073 eV Total energy + Delta-G solvation = -3531.978357 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.22686 -40.10390 -38.84507 -37.16291 -35.77840 -33.70298 -32.46593 -32.03144 -30.50398 -29.27484 -28.02455 -27.59965 -25.21708 -24.49419 -22.91842 -22.50257 -21.93082 -20.89675 -20.43095 -18.45782 -18.06346 -17.68836 -17.13114 -16.77915 -16.62979 -16.21570 -15.72430 -15.33971 -15.11228 -14.87278 -14.85490 -14.55157 -14.41187 -14.14846 -14.02122 -13.94815 -13.51760 -13.37706 -13.11020 -12.82825 -12.77206 -12.62886 -12.50017 -12.38681 -12.25891 -12.09910 -11.97229 -11.75926 -11.57213 -11.36615 -10.97528 -10.73050 -10.47368 -10.11055 -9.87626 -9.56043 -9.08488 -8.09702 -6.26003 -0.18350 0.34832 1.23036 1.25827 1.42771 1.78115 1.82974 2.35603 2.83897 3.09440 3.12823 3.44761 3.56390 3.77906 3.85355 3.93782 4.12313 4.17799 4.35798 4.44050 4.45440 4.50284 4.54821 4.58035 4.62260 4.72304 4.78780 4.84423 4.89808 4.97080 4.98834 5.03845 5.09162 5.21021 5.25750 5.35857 5.38200 5.42304 5.46275 5.46679 5.62090 5.71549 5.77679 5.92357 5.99672 6.07129 6.14123 6.32323 6.46714 6.93921 7.15636 7.42523 8.87018 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.014509 B = 0.004548 C = 0.003819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1929.313417 B = 6155.324497 C = 7330.869880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.103 4.103 3 C 0.213 3.787 4 H 0.007 0.993 5 C -0.540 4.540 6 H 0.045 0.955 7 C 0.026 3.974 8 N -0.908 5.908 9 Si 0.931 3.069 10 H -0.291 1.291 11 H -0.276 1.276 12 H -0.273 1.273 13 N -0.500 5.500 14 C 0.039 3.961 15 C -0.125 4.125 16 C 0.170 3.830 17 H 0.144 0.856 18 N -0.605 5.605 19 C 0.138 3.862 20 C -0.079 4.079 21 C -0.096 4.096 22 C -0.080 4.080 23 C -0.129 4.129 24 C -0.075 4.075 25 C -0.194 4.194 26 C 0.531 3.469 27 O -0.571 6.571 28 C 0.027 3.973 29 H 0.061 0.939 30 H 0.035 0.965 31 H 0.046 0.954 32 H 0.061 0.939 33 H 0.023 0.977 34 H 0.261 0.739 35 H 0.017 0.983 36 H 0.082 0.918 37 H 0.041 0.959 38 H 0.105 0.895 39 H 0.129 0.871 40 H 0.121 0.879 41 H 0.172 0.828 42 H 0.172 0.828 43 H 0.154 0.846 44 H 0.108 0.892 45 H 0.073 0.927 46 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.243 3.966 25.903 26.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.142 4.142 3 C 0.105 3.895 4 H 0.025 0.975 5 C -0.579 4.579 6 H 0.063 0.937 7 C -0.173 4.173 8 N -0.548 5.548 9 Si 0.759 3.241 10 H -0.217 1.217 11 H -0.201 1.201 12 H -0.199 1.199 13 N -0.223 5.223 14 C -0.090 4.090 15 C -0.164 4.164 16 C 0.068 3.932 17 H 0.162 0.838 18 N -0.337 5.337 19 C 0.017 3.983 20 C -0.080 4.080 21 C -0.114 4.114 22 C -0.097 4.097 23 C -0.146 4.146 24 C -0.095 4.095 25 C -0.197 4.197 26 C 0.321 3.679 27 O -0.452 6.452 28 C -0.102 4.102 29 H 0.080 0.920 30 H 0.055 0.945 31 H 0.065 0.935 32 H 0.079 0.921 33 H 0.042 0.958 34 H 0.070 0.930 35 H 0.035 0.965 36 H 0.100 0.900 37 H 0.059 0.941 38 H 0.124 0.876 39 H 0.146 0.854 40 H 0.139 0.861 41 H 0.189 0.811 42 H 0.189 0.811 43 H 0.172 0.828 44 H 0.126 0.874 45 H 0.091 0.909 46 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -2.646 3.885 25.069 25.506 hybrid contribution 2.624 -0.086 -1.444 2.996 sum -0.022 3.799 23.625 23.928 Atomic orbital electron populations 1.21546 0.95484 0.99812 1.01117 1.21381 0.95039 0.97723 1.00012 1.19168 0.91282 0.91821 0.87207 0.97469 1.22051 0.94268 1.36292 1.05331 0.93663 1.25423 1.00867 0.95344 0.95700 1.69978 1.35672 1.39090 1.10064 0.85912 0.83086 0.77829 0.77284 1.21666 1.20145 1.19874 1.65104 1.52672 1.01592 1.02965 1.22680 0.98568 0.91524 0.96203 1.22632 1.01020 0.98218 0.94541 1.21970 0.90927 0.93957 0.86390 0.83818 1.48092 1.05546 1.71417 1.08656 1.20845 0.94438 1.05765 0.77217 1.20768 0.94841 0.98185 0.94235 1.20772 0.97319 0.99378 0.93921 1.21827 0.92121 0.94936 1.00854 1.21425 1.01948 1.00312 0.90960 1.21016 0.93426 0.96785 0.98231 1.20526 0.95928 1.08850 0.94415 1.19065 0.83699 0.76471 0.88657 1.90853 1.72692 1.51911 1.29725 1.23383 0.98681 0.97166 0.90966 0.92045 0.94536 0.93506 0.92090 0.95841 0.92952 0.96467 0.89983 0.94057 0.87635 0.85375 0.86084 0.81074 0.81057 0.82842 0.87367 0.90897 0.94590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.96 9.72 71.98 0.70 -4.26 16 2 C -0.10 -5.18 5.14 30.59 0.16 -5.02 16 3 C 0.21 11.38 1.80 44.17 0.08 11.46 16 4 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 5 C -0.54 -32.55 6.36 25.60 0.16 -32.39 16 6 H 0.05 2.95 6.02 -2.91 -0.02 2.93 16 7 C 0.03 1.58 5.30 84.65 0.45 2.03 16 8 N -0.91 -55.15 11.30 21.45 0.24 -54.91 16 9 Si 0.93 49.61 29.54 68.60 2.03 51.63 16 10 H -0.29 -16.49 7.11 99.48 0.71 -15.78 16 11 H -0.28 -14.14 7.11 99.48 0.71 -13.43 16 12 H -0.27 -13.89 7.11 99.48 0.71 -13.19 16 13 N -0.50 -22.16 4.77 -862.25 -4.12 -26.27 16 14 C 0.04 1.63 6.35 86.45 0.55 2.18 16 15 C -0.13 -4.26 6.45 31.47 0.20 -4.06 16 16 C 0.17 5.27 3.79 46.20 0.17 5.45 16 17 H 0.14 3.21 8.13 -2.39 -0.02 3.19 16 18 N -0.61 -17.86 2.97 -798.92 -2.37 -20.24 16 19 C 0.14 2.39 7.37 85.63 0.63 3.02 16 20 C -0.08 -1.54 6.38 -19.63 -0.13 -1.66 16 21 C -0.10 -1.14 10.03 22.17 0.22 -0.92 16 22 C -0.08 -0.90 10.05 22.36 0.22 -0.67 16 23 C -0.13 -2.16 10.02 22.23 0.22 -1.94 16 24 C -0.08 -1.99 10.10 22.53 0.23 -1.76 16 25 C -0.19 -5.72 6.26 -20.14 -0.13 -5.85 16 26 C 0.53 20.30 7.06 86.75 0.61 20.91 16 27 O -0.57 -29.09 15.41 -3.87 -0.06 -29.15 16 28 C 0.03 1.14 4.86 86.65 0.42 1.56 16 29 H 0.06 2.28 7.86 -2.38 -0.02 2.26 16 30 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.06 3.46 5.99 -2.39 -0.01 3.45 16 33 H 0.02 1.17 6.89 -2.39 -0.02 1.15 16 34 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 35 H 0.02 0.87 6.41 -2.39 -0.02 0.85 16 36 H 0.08 3.03 8.14 -2.38 -0.02 3.01 16 37 H 0.04 1.65 6.76 -2.39 -0.02 1.64 16 38 H 0.11 2.68 8.14 -2.39 -0.02 2.66 16 39 H 0.13 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.12 1.50 8.14 -2.38 -0.02 1.48 16 41 H 0.17 0.66 8.06 -2.91 -0.02 0.64 16 42 H 0.17 0.59 8.06 -2.91 -0.02 0.56 16 43 H 0.15 1.74 8.06 -2.91 -0.02 1.72 16 44 H 0.11 3.17 8.06 -2.91 -0.02 3.14 16 45 H 0.07 2.87 7.60 -2.39 -0.02 2.85 16 46 H 0.04 1.89 4.20 -2.39 -0.01 1.88 16 Total: -1.00 -82.13 359.74 1.48 -80.65 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: 0.97 Total: 10.21 kcal Atomic # 6 Polarization: -16.71 SS G_CDS: 4.79 Total: -11.93 kcal Atomic # 7 Polarization: -95.17 SS G_CDS: -6.25 Total: -101.42 kcal Atomic # 8 Polarization: -29.09 SS G_CDS: -0.06 Total: -29.15 kcal Atomic # 14 Polarization: 49.61 SS G_CDS: 2.03 Total: 51.63 kcal Total: -82.13 1.48 -80.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255177940.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.603 kcal (2) G-P(sol) polarization free energy of solvation -82.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds