Wall clock time and date at job start Tue Mar 31 2020 11:53:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47139 * 2 1 4 4 S 1.81401 * 109.46756 * 119.99820 * 2 1 3 5 5 C 1.81403 * 103.00201 * 65.00286 * 4 2 1 6 6 C 1.50700 * 109.47499 * 179.97438 * 5 4 2 7 7 O 1.21289 * 119.99308 * 359.97438 * 6 5 4 8 8 N 1.34766 * 120.00108 * 180.02562 * 6 5 4 9 9 C 1.46923 * 120.63238 * 0.02562 * 8 6 5 10 10 C 1.53192 * 108.77592 * 126.37519 * 9 8 6 11 11 C 1.53041 * 109.31379 * 54.63270 * 10 9 8 12 12 C 1.53038 * 109.54141 * 298.63829 * 11 10 9 13 13 H 1.09004 * 109.52542 * 301.40100 * 12 11 10 14 14 C 1.52996 * 109.49989 * 181.31305 * 12 11 10 15 15 C 1.52997 * 109.47131 * 175.16115 * 14 12 11 16 16 N 1.46506 * 109.47289 * 180.02562 * 15 14 12 17 17 C 1.36930 * 120.00258 * 180.02562 * 16 15 14 18 18 H 1.08004 * 119.99823 * 0.02562 * 17 16 15 19 19 C 1.38815 * 120.00439 * 179.97438 * 17 16 15 20 20 N 1.31618 * 119.99225 * 0.02562 * 19 17 16 21 21 Si 1.86794 * 120.00268 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47312 * 60.00457 * 21 19 17 23 23 H 1.48506 * 109.46866 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.47236 * 300.00219 * 21 19 17 25 25 C 1.46930 * 120.62800 * 180.02562 * 8 6 5 26 26 H 1.08994 * 109.47009 * 60.00015 * 1 2 3 27 27 H 1.08999 * 109.47225 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47381 * 299.99898 * 1 2 3 29 29 H 1.08999 * 109.47043 * 239.99414 * 2 1 3 30 30 H 1.09001 * 109.47304 * 179.97438 * 3 2 1 31 31 H 1.08994 * 109.47158 * 299.99893 * 3 2 1 32 32 H 1.09001 * 109.46901 * 59.99808 * 3 2 1 33 33 H 1.09003 * 109.47116 * 59.99383 * 5 4 2 34 34 H 1.08998 * 109.46989 * 299.99810 * 5 4 2 35 35 H 1.09003 * 109.58839 * 246.16016 * 9 8 6 36 36 H 1.08996 * 109.58671 * 6.58427 * 9 8 6 37 37 H 1.08991 * 109.50044 * 174.58937 * 10 9 8 38 38 H 1.09003 * 109.49659 * 294.65418 * 10 9 8 39 39 H 1.09000 * 109.46275 * 178.61533 * 11 10 9 40 40 H 1.08997 * 109.45681 * 58.65887 * 11 10 9 41 41 H 1.09001 * 109.46997 * 55.16541 * 14 12 11 42 42 H 1.08996 * 109.47452 * 295.16115 * 14 12 11 43 43 H 1.09001 * 109.47289 * 60.00050 * 15 14 12 44 44 H 1.09004 * 109.47261 * 300.00306 * 15 14 12 45 45 H 0.97001 * 119.99251 * 0.02562 * 16 15 14 46 46 H 0.97000 * 119.99950 * 179.97438 * 20 19 17 47 47 H 1.08998 * 109.58861 * 113.83987 * 25 8 6 48 48 H 1.08998 * 109.70387 * 353.48337 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 16 2.1346 -0.8551 1.4812 5 6 1.5664 -2.5593 1.2291 6 6 1.9983 -3.4106 2.3952 7 8 2.6279 -2.9163 3.3064 8 7 1.6858 -4.7212 2.4250 9 6 0.9252 -5.3346 1.3278 10 6 1.7000 -6.5505 0.8101 11 6 1.9950 -7.4967 1.9762 12 6 2.8614 -6.7773 3.0125 13 1 3.7885 -6.4454 2.5450 14 6 3.1831 -7.7343 4.1621 15 6 4.1468 -7.0547 5.1369 16 7 4.4553 -7.9712 6.2374 17 6 5.3030 -7.5784 7.2384 18 1 5.7439 -6.5927 7.2169 19 6 5.5949 -8.4466 8.2815 20 7 5.0572 -9.6476 8.3079 21 14 6.7519 -7.9110 9.6466 22 1 6.1971 -6.7112 10.3233 23 1 6.8982 -9.0123 10.6320 24 1 8.0805 -7.5839 9.0696 25 6 2.0995 -5.5639 3.5553 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6766 1.9563 0.8900 33 1 2.0001 -2.9548 0.3106 34 1 0.4792 -2.5722 1.1524 35 1 -0.0515 -5.6521 1.6931 36 1 0.7987 -4.6116 0.5220 37 1 1.1026 -7.0708 0.0615 38 1 2.6375 -6.2207 0.3624 39 1 2.5249 -8.3745 1.6064 40 1 1.0578 -7.8064 2.4385 41 1 3.6457 -8.6375 3.7642 42 1 2.2632 -7.9969 4.6844 43 1 3.6842 -6.1514 5.5347 44 1 5.0667 -6.7919 4.6146 45 1 4.0590 -8.8564 6.2568 46 1 5.2614 -10.2546 9.0365 47 1 1.2185 -5.9001 4.1020 48 1 2.7471 -4.9935 4.2212 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753541622.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:53:09 Heat of formation + Delta-G solvation = -44.658316 kcal Electronic energy + Delta-G solvation = -24030.744139 eV Core-core repulsion = 20632.361981 eV Total energy + Delta-G solvation = -3398.382158 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.177 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.35471 -37.86179 -35.38135 -35.14185 -33.57933 -32.20366 -31.01070 -30.12623 -27.69013 -27.30629 -25.33099 -24.15772 -22.59895 -22.32283 -20.94815 -20.29670 -19.23233 -17.50234 -16.94087 -16.85356 -16.09895 -15.87596 -15.18244 -14.95649 -14.75616 -14.49689 -14.32459 -13.91375 -13.72364 -13.65046 -13.49418 -13.33076 -13.02714 -12.83950 -12.70866 -12.54616 -12.25580 -11.87907 -11.72377 -11.61203 -11.41296 -11.15745 -11.12764 -11.03198 -10.79286 -10.59197 -10.42774 -10.23730 -10.01637 -9.98977 -9.87340 -9.59251 -8.79143 -8.77037 -7.90760 -6.84611 -5.69806 -2.97871 1.15877 2.21656 2.42770 2.83798 3.50400 3.53671 3.55715 4.15473 4.33261 4.42004 4.46446 4.58978 4.65558 4.69742 4.75586 4.78175 4.81876 4.93235 5.09335 5.13388 5.17185 5.22233 5.31126 5.39048 5.39528 5.55353 5.59268 5.61760 5.67624 5.68023 5.72271 5.78103 5.86832 5.98950 6.02914 6.21289 6.24390 6.34701 6.46343 6.50144 6.93314 6.96373 7.18968 7.77758 7.98704 8.49714 9.60468 10.18983 10.53833 11.53276 Molecular weight = 314.18amu Principal moments of inertia in cm(-1) A = 0.016798 B = 0.002525 C = 0.002236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1666.460926 B =11086.534973 C =12516.664376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.083 4.083 3 C -0.132 4.132 4 S -0.178 6.178 5 C -0.126 4.126 6 C 0.528 3.472 7 O -0.513 6.513 8 N -0.608 5.608 9 C 0.106 3.894 10 C -0.135 4.135 11 C -0.116 4.116 12 C -0.095 4.095 13 H 0.074 0.926 14 C -0.118 4.118 15 C 0.150 3.850 16 N -0.734 5.734 17 C -0.237 4.237 18 H 0.070 0.930 19 C -0.017 4.017 20 N -0.936 5.936 21 Si 0.908 3.092 22 H -0.286 1.286 23 H -0.291 1.291 24 H -0.286 1.286 25 C 0.115 3.885 26 H 0.063 0.937 27 H 0.054 0.946 28 H 0.069 0.931 29 H 0.085 0.915 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.107 0.893 34 H 0.107 0.893 35 H 0.072 0.928 36 H 0.079 0.921 37 H 0.074 0.926 38 H 0.067 0.933 39 H 0.068 0.932 40 H 0.065 0.935 41 H 0.066 0.934 42 H 0.064 0.936 43 H 0.021 0.979 44 H 0.017 0.983 45 H 0.383 0.617 46 H 0.255 0.745 47 H 0.070 0.930 48 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.856 14.764 -24.544 31.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.212 4.212 3 C -0.190 4.190 4 S 0.049 5.951 5 C -0.277 4.277 6 C 0.314 3.686 7 O -0.388 6.388 8 N -0.342 5.342 9 C -0.018 4.018 10 C -0.173 4.173 11 C -0.153 4.153 12 C -0.115 4.115 13 H 0.092 0.908 14 C -0.157 4.157 15 C 0.023 3.977 16 N -0.378 5.378 17 C -0.368 4.368 18 H 0.088 0.912 19 C -0.212 4.212 20 N -0.585 5.585 21 Si 0.739 3.261 22 H -0.212 1.212 23 H -0.217 1.217 24 H -0.213 1.213 25 C -0.006 4.006 26 H 0.082 0.918 27 H 0.073 0.927 28 H 0.088 0.912 29 H 0.104 0.896 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.125 0.875 34 H 0.126 0.874 35 H 0.090 0.910 36 H 0.097 0.903 37 H 0.093 0.907 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.082 0.918 43 H 0.038 0.962 44 H 0.035 0.965 45 H 0.216 0.784 46 H 0.064 0.936 47 H 0.088 0.912 48 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -12.819 15.552 -23.086 30.646 hybrid contribution -0.273 -0.782 -0.400 0.920 sum -13.093 14.770 -23.487 30.679 Atomic orbital electron populations 1.22106 0.93363 1.02207 1.03039 1.23260 0.98904 1.00112 0.98922 1.21564 1.01979 0.92720 1.02755 1.87672 1.74480 1.03283 1.29706 1.23551 1.05362 0.97079 1.01722 1.19631 0.79935 0.82047 0.86995 1.90791 1.38853 1.71652 1.37514 1.48064 1.55572 1.07980 1.22635 1.21785 0.95018 0.95740 0.89223 1.21925 1.00846 0.96120 0.98415 1.21595 1.00335 0.97997 0.95395 1.21469 0.98610 0.95062 0.96392 0.90762 1.21727 1.00358 0.98121 0.95452 1.20716 0.94956 0.93233 0.88816 1.42362 1.55924 1.15591 1.23918 1.19222 1.19006 0.98706 0.99866 0.91234 1.24740 1.01032 0.96311 0.99127 1.69653 1.48024 1.07061 1.33777 0.86251 0.80790 0.77235 0.81858 1.21233 1.21715 1.21283 1.21866 0.99737 0.91376 0.87652 0.91798 0.92736 0.91182 0.89628 0.91517 0.91149 0.91556 0.87464 0.87440 0.90987 0.90259 0.90694 0.91443 0.91325 0.91600 0.91511 0.91760 0.96152 0.96518 0.78376 0.93560 0.91203 0.88063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 9.10 37.16 0.34 -0.48 16 2 C -0.08 -0.57 3.38 -26.73 -0.09 -0.66 16 3 C -0.13 -0.81 9.20 37.16 0.34 -0.47 16 4 S -0.18 -1.93 20.29 -107.50 -2.18 -4.11 16 5 C -0.13 -1.13 4.47 36.01 0.16 -0.97 16 6 C 0.53 6.87 7.72 -10.99 -0.08 6.78 16 7 O -0.51 -9.15 15.28 5.55 0.08 -9.06 16 8 N -0.61 -6.87 2.97 -172.75 -0.51 -7.39 16 9 C 0.11 0.77 6.34 -3.71 -0.02 0.75 16 10 C -0.13 -1.00 6.08 -26.61 -0.16 -1.16 16 11 C -0.12 -1.12 5.17 -26.69 -0.14 -1.26 16 12 C -0.10 -1.23 2.34 -90.49 -0.21 -1.44 16 13 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 14 C -0.12 -1.90 4.80 -26.73 -0.13 -2.03 16 15 C 0.15 3.18 6.02 -4.04 -0.02 3.16 16 16 N -0.73 -19.52 5.60 -59.90 -0.34 -19.86 16 17 C -0.24 -6.97 9.99 -15.06 -0.15 -7.12 16 18 H 0.07 2.01 7.83 -52.48 -0.41 1.60 16 19 C -0.02 -0.50 5.50 -17.43 -0.10 -0.59 16 20 N -0.94 -29.14 13.06 55.49 0.72 -28.42 16 21 Si 0.91 23.30 29.55 -169.99 -5.02 18.28 16 22 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 23 H -0.29 -7.46 7.11 56.52 0.40 -7.05 16 24 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 25 C 0.12 1.55 5.32 -3.69 -0.02 1.53 16 26 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 27 H 0.05 0.27 6.92 -51.93 -0.36 -0.09 16 28 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.09 0.51 8.14 -51.92 -0.42 0.08 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.11 0.74 7.69 -51.92 -0.40 0.34 16 34 H 0.11 0.72 6.95 -51.92 -0.36 0.36 16 35 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.08 0.40 5.93 -51.93 -0.31 0.09 16 37 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.02 0.45 6.69 -51.93 -0.35 0.10 16 44 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.38 10.54 7.67 -40.82 -0.31 10.22 16 46 H 0.25 7.66 8.31 -40.82 -0.34 7.32 16 47 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 48 H 0.10 1.68 5.72 -51.93 -0.30 1.39 16 LS Contribution 387.49 15.07 5.84 5.84 Total: -1.00 -34.93 387.49 -10.39 -45.32 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: -8.70 Total: 3.35 kcal Atomic # 6 Polarization: -3.66 SS G_CDS: -0.29 Total: -3.95 kcal Atomic # 7 Polarization: -55.54 SS G_CDS: -0.12 Total: -55.66 kcal Atomic # 8 Polarization: -9.15 SS G_CDS: 0.08 Total: -9.06 kcal Atomic # 14 Polarization: 23.30 SS G_CDS: -5.02 Total: 18.28 kcal Atomic # 16 Polarization: -1.93 SS G_CDS: -2.18 Total: -4.11 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -34.93 -10.39 -45.32 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753541622.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.660 kcal (2) G-P(sol) polarization free energy of solvation -34.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds