Wall clock time and date at job start Tue Mar 31 2020 11:53:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47139 * 2 1 4 4 S 1.81401 * 109.46756 * 119.99820 * 2 1 3 5 5 C 1.81403 * 103.00201 * 65.00286 * 4 2 1 6 6 C 1.50700 * 109.47499 * 179.97438 * 5 4 2 7 7 O 1.21289 * 119.99308 * 359.97438 * 6 5 4 8 8 N 1.34766 * 120.00108 * 180.02562 * 6 5 4 9 9 C 1.46923 * 120.63238 * 0.02562 * 8 6 5 10 10 C 1.53192 * 108.77592 * 126.37519 * 9 8 6 11 11 C 1.53041 * 109.31379 * 54.63270 * 10 9 8 12 12 C 1.53038 * 109.54141 * 298.63829 * 11 10 9 13 13 H 1.09004 * 109.52542 * 301.40100 * 12 11 10 14 14 C 1.52996 * 109.49989 * 181.31305 * 12 11 10 15 15 C 1.52997 * 109.47131 * 175.16115 * 14 12 11 16 16 N 1.46506 * 109.47289 * 180.02562 * 15 14 12 17 17 C 1.36930 * 120.00258 * 180.02562 * 16 15 14 18 18 H 1.08004 * 119.99823 * 0.02562 * 17 16 15 19 19 C 1.38815 * 120.00439 * 179.97438 * 17 16 15 20 20 N 1.31618 * 119.99225 * 0.02562 * 19 17 16 21 21 Si 1.86794 * 120.00268 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47312 * 60.00457 * 21 19 17 23 23 H 1.48506 * 109.46866 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.47236 * 300.00219 * 21 19 17 25 25 C 1.46930 * 120.62800 * 180.02562 * 8 6 5 26 26 H 1.08994 * 109.47009 * 60.00015 * 1 2 3 27 27 H 1.08999 * 109.47225 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47381 * 299.99898 * 1 2 3 29 29 H 1.08999 * 109.47043 * 239.99414 * 2 1 3 30 30 H 1.09001 * 109.47304 * 179.97438 * 3 2 1 31 31 H 1.08994 * 109.47158 * 299.99893 * 3 2 1 32 32 H 1.09001 * 109.46901 * 59.99808 * 3 2 1 33 33 H 1.09003 * 109.47116 * 59.99383 * 5 4 2 34 34 H 1.08998 * 109.46989 * 299.99810 * 5 4 2 35 35 H 1.09003 * 109.58839 * 246.16016 * 9 8 6 36 36 H 1.08996 * 109.58671 * 6.58427 * 9 8 6 37 37 H 1.08991 * 109.50044 * 174.58937 * 10 9 8 38 38 H 1.09003 * 109.49659 * 294.65418 * 10 9 8 39 39 H 1.09000 * 109.46275 * 178.61533 * 11 10 9 40 40 H 1.08997 * 109.45681 * 58.65887 * 11 10 9 41 41 H 1.09001 * 109.46997 * 55.16541 * 14 12 11 42 42 H 1.08996 * 109.47452 * 295.16115 * 14 12 11 43 43 H 1.09001 * 109.47289 * 60.00050 * 15 14 12 44 44 H 1.09004 * 109.47261 * 300.00306 * 15 14 12 45 45 H 0.97001 * 119.99251 * 0.02562 * 16 15 14 46 46 H 0.97000 * 119.99950 * 179.97438 * 20 19 17 47 47 H 1.08998 * 109.58861 * 113.83987 * 25 8 6 48 48 H 1.08998 * 109.70387 * 353.48337 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 16 2.1346 -0.8551 1.4812 5 6 1.5664 -2.5593 1.2291 6 6 1.9983 -3.4106 2.3952 7 8 2.6279 -2.9163 3.3064 8 7 1.6858 -4.7212 2.4250 9 6 0.9252 -5.3346 1.3278 10 6 1.7000 -6.5505 0.8101 11 6 1.9950 -7.4967 1.9762 12 6 2.8614 -6.7773 3.0125 13 1 3.7885 -6.4454 2.5450 14 6 3.1831 -7.7343 4.1621 15 6 4.1468 -7.0547 5.1369 16 7 4.4553 -7.9712 6.2374 17 6 5.3030 -7.5784 7.2384 18 1 5.7439 -6.5927 7.2169 19 6 5.5949 -8.4466 8.2815 20 7 5.0572 -9.6476 8.3079 21 14 6.7519 -7.9110 9.6466 22 1 6.1971 -6.7112 10.3233 23 1 6.8982 -9.0123 10.6320 24 1 8.0805 -7.5839 9.0696 25 6 2.0995 -5.5639 3.5553 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6766 1.9563 0.8900 33 1 2.0001 -2.9548 0.3106 34 1 0.4792 -2.5722 1.1524 35 1 -0.0515 -5.6521 1.6931 36 1 0.7987 -4.6116 0.5220 37 1 1.1026 -7.0708 0.0615 38 1 2.6375 -6.2207 0.3624 39 1 2.5249 -8.3745 1.6064 40 1 1.0578 -7.8064 2.4385 41 1 3.6457 -8.6375 3.7642 42 1 2.2632 -7.9969 4.6844 43 1 3.6842 -6.1514 5.5347 44 1 5.0667 -6.7919 4.6146 45 1 4.0590 -8.8564 6.2568 46 1 5.2614 -10.2546 9.0365 47 1 1.2185 -5.9001 4.1020 48 1 2.7471 -4.9935 4.2212 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753541622.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:53:08 Heat of formation + Delta-G solvation = -66.469723 kcal Electronic energy + Delta-G solvation = -24031.689953 eV Core-core repulsion = 20632.361981 eV Total energy + Delta-G solvation = -3399.327972 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.177 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.30944 -38.93475 -36.99216 -35.64717 -35.08173 -33.43949 -32.43417 -31.24388 -28.87682 -28.05244 -26.21654 -25.88107 -24.03319 -22.86277 -22.23390 -21.45165 -20.09285 -19.17580 -18.34711 -17.65415 -16.91596 -16.80528 -16.69492 -15.95522 -15.77313 -15.52126 -15.36020 -15.12004 -15.08782 -14.69792 -14.59170 -14.25613 -14.18517 -13.94744 -13.51536 -13.45851 -13.11499 -12.99746 -12.84336 -12.61295 -12.46310 -12.28208 -12.21196 -12.19153 -12.07506 -11.97538 -11.89851 -11.76110 -11.58065 -11.21129 -10.97513 -10.94531 -10.62725 -9.70779 -9.05131 -8.71485 -7.99675 -5.29117 0.46938 1.43353 1.47199 1.47855 1.53562 1.58997 1.96175 2.52590 3.32707 3.37479 3.63570 3.81433 3.87452 3.88911 3.95847 4.00802 4.05208 4.09386 4.16918 4.30986 4.35740 4.39664 4.48979 4.53220 4.67354 4.70495 4.73985 4.79907 4.84159 4.86142 4.86616 4.90285 4.97238 5.04308 5.12666 5.22826 5.25529 5.28536 5.30575 5.36123 5.43498 5.48245 5.51476 6.23261 6.30827 7.04864 7.28989 8.03814 8.29348 9.23462 Molecular weight = 314.18amu Principal moments of inertia in cm(-1) A = 0.016798 B = 0.002525 C = 0.002236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1666.460926 B =11086.534973 C =12516.664376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.061 4.061 3 C -0.133 4.133 4 S -0.270 6.270 5 C -0.102 4.102 6 C 0.518 3.482 7 O -0.575 6.575 8 N -0.604 5.604 9 C 0.098 3.902 10 C -0.129 4.129 11 C -0.112 4.112 12 C -0.084 4.084 13 H 0.061 0.939 14 C -0.104 4.104 15 C 0.150 3.850 16 N -0.746 5.746 17 C -0.254 4.254 18 H 0.067 0.933 19 C -0.074 4.074 20 N -0.967 5.967 21 Si 0.975 3.025 22 H -0.279 1.279 23 H -0.288 1.288 24 H -0.278 1.278 25 C 0.118 3.882 26 H 0.083 0.917 27 H 0.063 0.937 28 H 0.057 0.943 29 H 0.101 0.899 30 H 0.056 0.944 31 H 0.094 0.906 32 H 0.055 0.945 33 H 0.136 0.864 34 H 0.138 0.862 35 H 0.089 0.911 36 H 0.112 0.888 37 H 0.107 0.893 38 H 0.062 0.938 39 H 0.072 0.928 40 H 0.074 0.926 41 H 0.068 0.932 42 H 0.066 0.934 43 H 0.012 0.988 44 H 0.008 0.992 45 H 0.376 0.624 46 H 0.254 0.746 47 H 0.075 0.925 48 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.576 14.909 -27.473 34.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.190 4.190 3 C -0.191 4.191 4 S -0.044 6.044 5 C -0.253 4.253 6 C 0.305 3.695 7 O -0.455 6.455 8 N -0.337 5.337 9 C -0.023 4.023 10 C -0.167 4.167 11 C -0.150 4.150 12 C -0.104 4.104 13 H 0.080 0.920 14 C -0.143 4.143 15 C 0.024 3.976 16 N -0.389 5.389 17 C -0.385 4.385 18 H 0.085 0.915 19 C -0.266 4.266 20 N -0.617 5.617 21 Si 0.803 3.197 22 H -0.206 1.206 23 H -0.214 1.214 24 H -0.204 1.204 25 C -0.005 4.005 26 H 0.102 0.898 27 H 0.082 0.918 28 H 0.076 0.924 29 H 0.120 0.880 30 H 0.075 0.925 31 H 0.113 0.887 32 H 0.074 0.926 33 H 0.154 0.846 34 H 0.156 0.844 35 H 0.107 0.893 36 H 0.130 0.870 37 H 0.126 0.874 38 H 0.081 0.919 39 H 0.091 0.909 40 H 0.093 0.907 41 H 0.087 0.913 42 H 0.085 0.915 43 H 0.030 0.970 44 H 0.026 0.974 45 H 0.208 0.792 46 H 0.062 0.938 47 H 0.093 0.907 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -14.567 15.701 -26.075 33.743 hybrid contribution 0.243 -0.793 0.467 0.952 sum -14.324 14.908 -25.608 32.912 Atomic orbital electron populations 1.22100 0.92036 1.02999 1.03390 1.23304 0.99731 0.99504 0.96447 1.21608 1.01464 0.92690 1.03376 1.88056 1.76008 1.06431 1.33907 1.23457 1.07016 0.94309 1.00491 1.20399 0.79014 0.82641 0.87408 1.90768 1.41697 1.72954 1.40050 1.48165 1.55174 1.07448 1.22873 1.22182 0.94972 0.96440 0.88704 1.21918 1.01288 0.95634 0.97828 1.21583 0.99844 0.98341 0.95230 1.21336 0.98848 0.94295 0.95890 0.92047 1.21597 0.98888 0.98420 0.95360 1.20846 0.95718 0.92637 0.88442 1.42561 1.55564 1.15997 1.24752 1.19570 1.19383 0.98735 1.00851 0.91456 1.25596 1.02953 0.96475 1.01580 1.69800 1.49368 1.08011 1.34505 0.85192 0.78822 0.76913 0.78726 1.20552 1.21385 1.20394 1.21617 0.99236 0.91340 0.88345 0.89805 0.91760 0.92365 0.88033 0.92465 0.88706 0.92577 0.84570 0.84417 0.89285 0.86980 0.87424 0.91901 0.90895 0.90706 0.91330 0.91503 0.97032 0.97422 0.79207 0.93757 0.90703 0.92276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.10 71.98 0.66 -0.54 16 2 C -0.06 -0.71 3.38 30.59 0.10 -0.61 16 3 C -0.13 -1.46 9.20 71.98 0.66 -0.80 16 4 S -0.27 -5.83 20.29 -56.49 -1.15 -6.98 16 5 C -0.10 -1.62 4.47 71.24 0.32 -1.30 16 6 C 0.52 13.34 7.72 87.66 0.68 14.01 16 7 O -0.58 -21.77 15.28 -3.06 -0.05 -21.81 16 8 N -0.60 -12.91 2.97 -818.86 -2.43 -15.34 16 9 C 0.10 1.05 6.34 86.36 0.55 1.60 16 10 C -0.13 -1.39 6.08 30.67 0.19 -1.20 16 11 C -0.11 -1.89 5.17 30.62 0.16 -1.73 16 12 C -0.08 -2.13 2.34 -10.71 -0.03 -2.15 16 13 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 14 C -0.10 -3.40 4.80 30.59 0.15 -3.26 16 15 C 0.15 6.64 6.02 86.38 0.52 7.16 16 16 N -0.75 -40.96 5.60 -343.44 -1.92 -42.89 16 17 C -0.25 -15.30 9.99 84.04 0.84 -14.46 16 18 H 0.07 3.99 7.83 -2.91 -0.02 3.97 16 19 C -0.07 -4.45 5.50 84.86 0.47 -3.98 16 20 N -0.97 -61.07 13.06 21.65 0.28 -60.78 16 21 Si 0.98 48.46 29.55 68.60 2.03 50.49 16 22 H -0.28 -13.50 7.11 99.48 0.71 -12.80 16 23 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 24 H -0.28 -13.34 7.11 99.48 0.71 -12.64 16 25 C 0.12 3.22 5.32 86.37 0.46 3.68 16 26 H 0.08 0.39 8.14 -2.39 -0.02 0.37 16 27 H 0.06 0.40 6.92 -2.39 -0.02 0.39 16 28 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.14 1.36 7.69 -2.39 -0.02 1.34 16 34 H 0.14 1.32 6.95 -2.39 -0.02 1.31 16 35 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.11 0.51 5.93 -2.39 -0.01 0.49 16 37 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 38 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 42 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 43 H 0.01 0.54 6.69 -2.39 -0.02 0.53 16 44 H 0.01 0.36 8.14 -2.38 -0.02 0.34 16 45 H 0.38 21.31 7.67 -92.71 -0.71 20.60 16 46 H 0.25 15.41 8.31 -92.71 -0.77 14.64 16 47 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 48 H 0.06 2.13 5.72 -2.39 -0.01 2.12 16 Total: -1.00 -80.52 387.49 2.69 -77.83 By element: Atomic # 1 Polarization: 22.86 SS G_CDS: 0.21 Total: 23.07 kcal Atomic # 6 Polarization: -9.30 SS G_CDS: 5.72 Total: -3.59 kcal Atomic # 7 Polarization: -114.94 SS G_CDS: -4.07 Total: -119.01 kcal Atomic # 8 Polarization: -21.77 SS G_CDS: -0.05 Total: -21.81 kcal Atomic # 14 Polarization: 48.46 SS G_CDS: 2.03 Total: 50.49 kcal Atomic # 16 Polarization: -5.83 SS G_CDS: -1.15 Total: -6.98 kcal Total: -80.52 2.69 -77.83 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753541622.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.362 kcal (2) G-P(sol) polarization free energy of solvation -80.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds