Wall clock time and date at job start Tue Mar 31 2020 12:09:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47152 * 2 1 4 4 C 1.53002 * 109.46892 * 119.99528 * 2 1 3 5 5 N 1.46897 * 109.47413 * 175.00308 * 4 2 1 6 6 C 1.46852 * 110.99988 * 287.21758 * 5 4 2 7 7 C 1.53033 * 109.52314 * 174.15646 * 6 5 4 8 8 C 1.53120 * 109.27591 * 59.18096 * 7 6 5 9 9 C 1.53119 * 109.15948 * 302.34181 * 8 7 6 10 10 H 1.09004 * 109.50358 * 177.60102 * 9 8 7 11 11 N 1.46501 * 109.50339 * 297.67682 * 9 8 7 12 12 C 1.34782 * 119.99793 * 274.91948 * 11 9 8 13 13 O 1.21279 * 120.00008 * 0.02562 * 12 11 9 14 14 C 1.50696 * 119.99752 * 179.97438 * 12 11 9 15 15 S 1.80997 * 109.47226 * 180.02562 * 14 12 11 16 16 C 1.76198 * 100.00292 * 180.02562 * 15 14 12 17 17 H 1.08005 * 119.99986 * 359.97438 * 16 15 14 18 18 C 1.38798 * 120.00250 * 179.97438 * 16 15 14 19 19 N 1.31627 * 119.99834 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00093 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47234 * 0.02562 * 20 18 16 22 22 H 1.48506 * 109.47029 * 120.00503 * 20 18 16 23 23 H 1.48500 * 109.47132 * 240.00363 * 20 18 16 24 24 C 1.46839 * 111.00251 * 163.00299 * 5 4 2 25 25 H 1.09003 * 109.46072 * 65.82344 * 24 5 4 26 26 C 1.53003 * 109.46696 * 305.85896 * 24 5 4 27 27 H 1.08996 * 109.47490 * 300.00463 * 1 2 3 28 28 H 1.09003 * 109.46724 * 60.00526 * 1 2 3 29 29 H 1.09002 * 109.46839 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47490 * 239.99537 * 2 1 3 31 31 H 1.09005 * 109.46965 * 59.98977 * 3 2 1 32 32 H 1.08996 * 109.47075 * 179.97438 * 3 2 1 33 33 H 1.09006 * 109.47139 * 299.99842 * 3 2 1 34 34 H 1.09003 * 109.47066 * 55.00148 * 4 2 1 35 35 H 1.09007 * 109.47165 * 295.00727 * 4 2 1 36 36 H 1.08998 * 109.46331 * 54.13740 * 6 5 4 37 37 H 1.09006 * 109.45639 * 294.17473 * 6 5 4 38 38 H 1.08998 * 109.50674 * 299.24084 * 7 6 5 39 39 H 1.09004 * 109.53109 * 179.13510 * 7 6 5 40 40 H 1.09003 * 109.52044 * 182.44078 * 8 7 6 41 41 H 1.09002 * 109.52799 * 62.25113 * 8 7 6 42 42 H 0.96992 * 120.00373 * 94.92330 * 11 9 8 43 43 H 1.09004 * 109.47419 * 300.00519 * 14 12 11 44 44 H 1.09006 * 109.47032 * 60.00381 * 14 12 11 45 45 H 0.97000 * 120.00145 * 179.97438 * 19 18 16 46 46 H 1.09004 * 109.46285 * 307.44499 * 26 24 5 47 47 H 1.08994 * 109.47103 * 67.44070 * 26 24 5 48 48 H 1.09000 * 109.47073 * 187.44691 * 26 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5040 -0.8266 1.1907 6 6 3.9205 -1.8206 0.1932 7 6 5.4444 -1.7996 0.0556 8 6 6.0789 -2.1145 1.4131 9 6 5.5911 -1.0935 2.4448 10 1 6.0059 -1.3378 3.4228 11 7 6.0276 0.2479 2.0496 12 6 7.2558 0.6850 2.3917 13 8 7.9998 -0.0324 3.0263 14 6 7.7050 2.0647 1.9847 15 16 9.3870 2.3538 2.5874 16 6 9.6496 3.9900 1.9886 17 1 8.8722 4.4928 1.4324 18 6 10.8555 4.6328 2.2316 19 7 11.8032 4.0199 2.9090 20 14 11.1342 6.3672 1.5961 21 1 9.9238 6.8288 0.8702 22 1 11.4020 7.2762 2.7395 23 1 12.2981 6.3755 0.6740 24 6 4.0628 -1.1349 2.5131 25 1 3.7399 -2.1295 2.8209 26 6 3.5697 -0.1021 3.5285 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.6765 1.9564 0.8899 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9564 -0.8900 34 1 1.6053 -1.7197 1.2953 35 1 1.7515 -0.1582 2.1371 36 1 3.4657 -1.5828 -0.7684 37 1 3.5981 -2.8119 0.5119 38 1 5.7663 -0.8125 -0.2763 39 1 5.7549 -2.5480 -0.6735 40 1 7.1643 -2.0579 1.3298 41 1 5.7885 -3.1170 1.7273 42 1 5.4327 0.8216 1.5418 43 1 7.6898 2.1459 0.8978 44 1 7.0322 2.8072 2.4140 45 1 12.6461 4.4689 3.0785 46 1 3.7759 0.9011 3.1555 47 1 2.4964 -0.2214 3.6760 48 1 4.0856 -0.2503 4.4772 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755715291.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:59 Heat of formation + Delta-G solvation = -53.727667 kcal Electronic energy + Delta-G solvation = -25078.685497 eV Core-core repulsion = 21679.910063 eV Total energy + Delta-G solvation = -3398.775435 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.177 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.37947 -38.50618 -36.25317 -33.70429 -33.16525 -32.39000 -31.20786 -28.81536 -27.31906 -27.05276 -26.16323 -25.43031 -23.29134 -21.69338 -20.66555 -20.08816 -19.09750 -17.81319 -16.56924 -16.15381 -15.87635 -15.56742 -15.06742 -14.78106 -14.73553 -14.45035 -14.17948 -14.00439 -13.78678 -13.42794 -13.13491 -12.91601 -12.67116 -12.52905 -12.43680 -12.17381 -12.14991 -11.97572 -11.83133 -11.57839 -11.21166 -11.15626 -11.04840 -11.00739 -10.97289 -10.88703 -10.71892 -10.45231 -10.26467 -9.75510 -9.26238 -9.03890 -8.74859 -8.48415 -8.17084 -6.44526 -6.18039 -3.87540 3.12532 3.22291 3.24287 3.31298 3.36905 3.55339 3.89395 4.24477 4.46608 4.50210 4.67465 4.70396 4.86530 4.91289 4.96526 5.12099 5.14339 5.17206 5.21950 5.28592 5.31733 5.38294 5.39106 5.46789 5.51770 5.61390 5.62060 5.68522 5.70427 5.72297 5.75521 5.88204 5.89260 5.95258 5.98572 6.04167 6.11496 6.19653 6.22517 6.23111 6.24438 6.77715 6.86984 6.95493 7.63881 7.95614 8.39504 8.77960 9.27570 10.89455 Molecular weight = 314.18amu Principal moments of inertia in cm(-1) A = 0.017510 B = 0.003070 C = 0.002802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.671799 B = 9118.566285 C = 9989.133629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.091 4.091 3 C -0.139 4.139 4 C 0.053 3.947 5 N -0.531 5.531 6 C 0.056 3.944 7 C -0.115 4.115 8 C -0.135 4.135 9 C 0.159 3.841 10 H 0.089 0.911 11 N -0.719 5.719 12 C 0.531 3.469 13 O -0.524 6.524 14 C -0.151 4.151 15 S -0.062 6.062 16 C -0.533 4.533 17 H 0.072 0.928 18 C 0.073 3.927 19 N -0.868 5.868 20 Si 0.918 3.082 21 H -0.272 1.272 22 H -0.280 1.280 23 H -0.280 1.280 24 C 0.076 3.924 25 H 0.051 0.949 26 C -0.148 4.148 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.050 0.950 30 H 0.068 0.932 31 H 0.049 0.951 32 H 0.068 0.932 33 H 0.045 0.955 34 H 0.031 0.969 35 H 0.082 0.918 36 H 0.075 0.925 37 H 0.030 0.970 38 H 0.073 0.927 39 H 0.064 0.936 40 H 0.074 0.926 41 H 0.063 0.937 42 H 0.404 0.596 43 H 0.087 0.913 44 H 0.087 0.913 45 H 0.267 0.733 46 H 0.069 0.931 47 H 0.055 0.945 48 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.415 -11.262 -5.441 26.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.110 4.110 3 C -0.196 4.196 4 C -0.074 4.074 5 N -0.256 5.256 6 C -0.072 4.072 7 C -0.153 4.153 8 C -0.173 4.173 9 C 0.053 3.947 10 H 0.107 0.893 11 N -0.373 5.373 12 C 0.317 3.683 13 O -0.399 6.399 14 C -0.302 4.302 15 S 0.165 5.835 16 C -0.681 4.681 17 H 0.091 0.909 18 C -0.136 4.136 19 N -0.504 5.504 20 Si 0.744 3.256 21 H -0.196 1.196 22 H -0.206 1.206 23 H -0.206 1.206 24 C -0.032 4.032 25 H 0.068 0.932 26 C -0.205 4.205 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.086 0.914 31 H 0.068 0.932 32 H 0.087 0.913 33 H 0.065 0.935 34 H 0.049 0.951 35 H 0.100 0.900 36 H 0.094 0.906 37 H 0.049 0.951 38 H 0.092 0.908 39 H 0.083 0.917 40 H 0.093 0.907 41 H 0.082 0.918 42 H 0.239 0.761 43 H 0.106 0.894 44 H 0.106 0.894 45 H 0.077 0.923 46 H 0.088 0.912 47 H 0.074 0.926 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -21.810 -12.000 -4.439 25.286 hybrid contribution -1.286 1.354 -1.184 2.211 sum -23.096 -10.646 -5.623 26.046 Atomic orbital electron populations 1.21828 0.95428 1.01381 1.01895 1.21101 0.94756 0.97311 0.97828 1.21722 1.02342 0.94703 1.00822 1.22306 0.87024 0.98902 0.99191 1.61856 1.09309 1.48188 1.06231 1.22144 0.96328 0.92806 0.95877 1.21545 0.93850 1.02662 0.97248 1.21998 1.01795 0.98217 0.95329 1.20857 0.91825 0.83366 0.98653 0.89277 1.45904 1.16561 1.16337 1.58546 1.20281 0.80977 0.88352 0.78692 1.90684 1.53081 1.57296 1.38794 1.23511 1.06398 0.95692 1.04623 1.85368 1.06217 1.19423 1.72502 1.22918 1.03720 1.00557 1.40941 0.90935 1.24989 0.94983 0.98739 0.94932 1.70030 1.05349 1.37361 1.37633 0.86130 0.78301 0.82559 0.78581 1.19610 1.20612 1.20609 1.21869 0.94159 0.98054 0.89164 0.93161 1.21919 1.00386 0.99905 0.98295 0.92691 0.92562 0.93080 0.91374 0.93160 0.91327 0.93543 0.95078 0.90018 0.90643 0.95143 0.90781 0.91705 0.90699 0.91807 0.76083 0.89434 0.89442 0.92304 0.91202 0.92606 0.91778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 9.19 37.16 0.34 -0.55 16 2 C -0.09 -0.64 2.94 -90.62 -0.27 -0.90 16 3 C -0.14 -1.08 9.08 37.16 0.34 -0.74 16 4 C 0.05 0.39 4.18 -3.82 -0.02 0.37 16 5 N -0.53 -4.43 3.37 -226.69 -0.76 -5.20 16 6 C 0.06 0.47 5.30 -3.83 -0.02 0.45 16 7 C -0.12 -1.12 5.93 -26.65 -0.16 -1.28 16 8 C -0.13 -1.53 5.67 -26.61 -0.15 -1.68 16 9 C 0.16 1.90 2.25 -67.85 -0.15 1.74 16 10 H 0.09 1.23 7.58 -51.93 -0.39 0.84 16 11 N -0.72 -9.79 3.82 -53.73 -0.21 -9.99 16 12 C 0.53 9.93 7.81 -10.99 -0.09 9.84 16 13 O -0.52 -11.83 15.53 5.56 0.09 -11.74 16 14 C -0.15 -3.11 6.16 36.00 0.22 -2.89 16 15 S -0.06 -1.69 20.57 -107.50 -2.21 -3.90 16 16 C -0.53 -15.34 9.50 30.94 0.29 -15.04 16 17 H 0.07 1.99 7.80 -52.48 -0.41 1.58 16 18 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 19 N -0.87 -26.41 13.22 55.49 0.73 -25.67 16 20 Si 0.92 21.61 29.55 -169.99 -5.02 16.58 16 21 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 24 C 0.08 0.70 2.15 -67.73 -0.15 0.56 16 25 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 26 C -0.15 -1.32 8.30 37.16 0.31 -1.01 16 27 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.07 0.50 6.54 -51.93 -0.34 0.16 16 31 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 0.61 7.75 -51.93 -0.40 0.21 16 33 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.03 0.23 8.04 -51.93 -0.42 -0.19 16 35 H 0.08 0.60 5.51 -51.93 -0.29 0.31 16 36 H 0.08 0.59 6.47 -51.93 -0.34 0.25 16 37 H 0.03 0.25 8.14 -51.93 -0.42 -0.17 16 38 H 0.07 0.83 7.73 -51.93 -0.40 0.43 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 41 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 42 H 0.40 4.87 7.95 -40.82 -0.32 4.55 16 43 H 0.09 1.68 8.14 -51.91 -0.42 1.26 16 44 H 0.09 1.67 8.14 -51.91 -0.42 1.25 16 45 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 46 H 0.07 0.69 7.65 -51.93 -0.40 0.29 16 47 H 0.06 0.42 6.42 -51.93 -0.33 0.09 16 48 H 0.06 0.61 8.13 -51.93 -0.42 0.19 16 LS Contribution 384.94 15.07 5.80 5.80 Total: -1.00 -32.55 384.94 -9.84 -42.40 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -8.67 Total: 0.87 kcal Atomic # 6 Polarization: -9.56 SS G_CDS: 0.41 Total: -9.15 kcal Atomic # 7 Polarization: -40.62 SS G_CDS: -0.24 Total: -40.86 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: 0.09 Total: -11.74 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.58 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -32.55 -9.84 -42.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755715291.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.328 kcal (2) G-P(sol) polarization free energy of solvation -32.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds