Wall clock time and date at job start Tue Mar 31 2020 12:09:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47152 * 2 1 4 4 C 1.53002 * 109.46892 * 119.99528 * 2 1 3 5 5 N 1.46897 * 109.47413 * 175.00308 * 4 2 1 6 6 C 1.46852 * 110.99988 * 287.21758 * 5 4 2 7 7 C 1.53033 * 109.52314 * 174.15646 * 6 5 4 8 8 C 1.53120 * 109.27591 * 59.18096 * 7 6 5 9 9 C 1.53119 * 109.15948 * 302.34181 * 8 7 6 10 10 H 1.09004 * 109.50358 * 177.60102 * 9 8 7 11 11 N 1.46501 * 109.50339 * 297.67682 * 9 8 7 12 12 C 1.34782 * 119.99793 * 274.91948 * 11 9 8 13 13 O 1.21279 * 120.00008 * 0.02562 * 12 11 9 14 14 C 1.50696 * 119.99752 * 179.97438 * 12 11 9 15 15 S 1.80997 * 109.47226 * 180.02562 * 14 12 11 16 16 C 1.76198 * 100.00292 * 180.02562 * 15 14 12 17 17 H 1.08005 * 119.99986 * 359.97438 * 16 15 14 18 18 C 1.38798 * 120.00250 * 179.97438 * 16 15 14 19 19 N 1.31627 * 119.99834 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00093 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47234 * 0.02562 * 20 18 16 22 22 H 1.48506 * 109.47029 * 120.00503 * 20 18 16 23 23 H 1.48500 * 109.47132 * 240.00363 * 20 18 16 24 24 C 1.46839 * 111.00251 * 163.00299 * 5 4 2 25 25 H 1.09003 * 109.46072 * 65.82344 * 24 5 4 26 26 C 1.53003 * 109.46696 * 305.85896 * 24 5 4 27 27 H 1.08996 * 109.47490 * 300.00463 * 1 2 3 28 28 H 1.09003 * 109.46724 * 60.00526 * 1 2 3 29 29 H 1.09002 * 109.46839 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47490 * 239.99537 * 2 1 3 31 31 H 1.09005 * 109.46965 * 59.98977 * 3 2 1 32 32 H 1.08996 * 109.47075 * 179.97438 * 3 2 1 33 33 H 1.09006 * 109.47139 * 299.99842 * 3 2 1 34 34 H 1.09003 * 109.47066 * 55.00148 * 4 2 1 35 35 H 1.09007 * 109.47165 * 295.00727 * 4 2 1 36 36 H 1.08998 * 109.46331 * 54.13740 * 6 5 4 37 37 H 1.09006 * 109.45639 * 294.17473 * 6 5 4 38 38 H 1.08998 * 109.50674 * 299.24084 * 7 6 5 39 39 H 1.09004 * 109.53109 * 179.13510 * 7 6 5 40 40 H 1.09003 * 109.52044 * 182.44078 * 8 7 6 41 41 H 1.09002 * 109.52799 * 62.25113 * 8 7 6 42 42 H 0.96992 * 120.00373 * 94.92330 * 11 9 8 43 43 H 1.09004 * 109.47419 * 300.00519 * 14 12 11 44 44 H 1.09006 * 109.47032 * 60.00381 * 14 12 11 45 45 H 0.97000 * 120.00145 * 179.97438 * 19 18 16 46 46 H 1.09004 * 109.46285 * 307.44499 * 26 24 5 47 47 H 1.08994 * 109.47103 * 67.44070 * 26 24 5 48 48 H 1.09000 * 109.47073 * 187.44691 * 26 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5040 -0.8266 1.1907 6 6 3.9205 -1.8206 0.1932 7 6 5.4444 -1.7996 0.0556 8 6 6.0789 -2.1145 1.4131 9 6 5.5911 -1.0935 2.4448 10 1 6.0059 -1.3378 3.4228 11 7 6.0276 0.2479 2.0496 12 6 7.2558 0.6850 2.3917 13 8 7.9998 -0.0324 3.0263 14 6 7.7050 2.0647 1.9847 15 16 9.3870 2.3538 2.5874 16 6 9.6496 3.9900 1.9886 17 1 8.8722 4.4928 1.4324 18 6 10.8555 4.6328 2.2316 19 7 11.8032 4.0199 2.9090 20 14 11.1342 6.3672 1.5961 21 1 9.9238 6.8288 0.8702 22 1 11.4020 7.2762 2.7395 23 1 12.2981 6.3755 0.6740 24 6 4.0628 -1.1349 2.5131 25 1 3.7399 -2.1295 2.8209 26 6 3.5697 -0.1021 3.5285 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.6765 1.9564 0.8899 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9564 -0.8900 34 1 1.6053 -1.7197 1.2953 35 1 1.7515 -0.1582 2.1371 36 1 3.4657 -1.5828 -0.7684 37 1 3.5981 -2.8119 0.5119 38 1 5.7663 -0.8125 -0.2763 39 1 5.7549 -2.5480 -0.6735 40 1 7.1643 -2.0579 1.3298 41 1 5.7885 -3.1170 1.7273 42 1 5.4327 0.8216 1.5418 43 1 7.6898 2.1459 0.8978 44 1 7.0322 2.8072 2.4140 45 1 12.6461 4.4689 3.0785 46 1 3.7759 0.9011 3.1555 47 1 2.4964 -0.2214 3.6760 48 1 4.0856 -0.2503 4.4772 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755715291.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:58 Heat of formation + Delta-G solvation = -73.815425 kcal Electronic energy + Delta-G solvation = -25079.556568 eV Core-core repulsion = 21679.910063 eV Total energy + Delta-G solvation = -3399.646505 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.177 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.38847 -39.74536 -37.05779 -34.78052 -34.57020 -33.93588 -32.34185 -30.22365 -27.96550 -27.85547 -27.60159 -26.84710 -24.10402 -22.56552 -21.89851 -20.71854 -20.10725 -19.82201 -17.89868 -17.21123 -16.88887 -16.87313 -16.53025 -16.14628 -15.89025 -15.39192 -15.30308 -15.13506 -14.72443 -14.56649 -14.45523 -14.05181 -13.82000 -13.52468 -13.29536 -13.14590 -13.02165 -12.91862 -12.90930 -12.83540 -12.73003 -12.56110 -12.28670 -11.92788 -11.77591 -11.73343 -11.69397 -11.61065 -11.18889 -11.14888 -11.04065 -10.84689 -10.25344 -9.96845 -9.19709 -8.64695 -8.33882 -6.11287 1.28895 1.41695 1.48447 1.59922 1.69851 2.27568 2.37412 2.89352 3.00177 3.35312 3.64171 3.78490 3.92989 4.03259 4.07487 4.16752 4.21623 4.31565 4.34863 4.38147 4.40631 4.52730 4.55651 4.64859 4.68802 4.71622 4.81877 4.86750 4.90828 4.92297 4.98559 5.05741 5.08261 5.15533 5.20648 5.26021 5.30959 5.36949 5.39750 5.42980 5.54509 5.60786 5.63790 6.18218 6.21059 6.22216 6.65124 7.07548 7.35596 8.75619 Molecular weight = 314.18amu Principal moments of inertia in cm(-1) A = 0.017510 B = 0.003070 C = 0.002802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.671799 B = 9118.566285 C = 9989.133629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.087 4.087 3 C -0.137 4.137 4 C 0.056 3.944 5 N -0.535 5.535 6 C 0.061 3.939 7 C -0.110 4.110 8 C -0.132 4.132 9 C 0.156 3.844 10 H 0.068 0.932 11 N -0.692 5.692 12 C 0.534 3.466 13 O -0.568 6.568 14 C -0.128 4.128 15 S -0.149 6.149 16 C -0.545 4.545 17 H 0.081 0.919 18 C 0.013 3.987 19 N -0.912 5.912 20 Si 0.999 3.001 21 H -0.257 1.257 22 H -0.273 1.273 23 H -0.274 1.274 24 C 0.087 3.913 25 H 0.063 0.937 26 C -0.145 4.145 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.067 0.933 31 H 0.048 0.952 32 H 0.055 0.945 33 H 0.046 0.954 34 H 0.038 0.962 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.040 0.960 38 H 0.058 0.942 39 H 0.075 0.925 40 H 0.041 0.959 41 H 0.081 0.919 42 H 0.415 0.585 43 H 0.104 0.896 44 H 0.105 0.895 45 H 0.271 0.729 46 H 0.060 0.940 47 H 0.075 0.925 48 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.167 -10.821 -6.772 29.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.106 4.106 3 C -0.194 4.194 4 C -0.071 4.071 5 N -0.261 5.261 6 C -0.066 4.066 7 C -0.148 4.148 8 C -0.170 4.170 9 C 0.050 3.950 10 H 0.086 0.914 11 N -0.345 5.345 12 C 0.320 3.680 13 O -0.447 6.447 14 C -0.279 4.279 15 S 0.078 5.922 16 C -0.693 4.693 17 H 0.099 0.901 18 C -0.192 4.192 19 N -0.548 5.548 20 Si 0.821 3.179 21 H -0.181 1.181 22 H -0.199 1.199 23 H -0.199 1.199 24 C -0.022 4.022 25 H 0.081 0.919 26 C -0.203 4.203 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.085 0.915 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.065 0.935 34 H 0.057 0.943 35 H 0.102 0.898 36 H 0.104 0.896 37 H 0.058 0.942 38 H 0.077 0.923 39 H 0.094 0.906 40 H 0.059 0.941 41 H 0.100 0.900 42 H 0.253 0.747 43 H 0.122 0.878 44 H 0.123 0.877 45 H 0.080 0.920 46 H 0.079 0.921 47 H 0.094 0.906 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -24.624 -11.569 -5.794 27.817 hybrid contribution -0.530 1.125 -0.785 1.470 sum -25.155 -10.444 -6.578 28.020 Atomic orbital electron populations 1.21796 0.94574 1.01836 1.02044 1.21065 0.95395 0.96553 0.97584 1.21696 1.01463 0.95424 1.00838 1.22314 0.85930 0.99374 0.99448 1.61831 1.10284 1.48371 1.05600 1.22107 0.94883 0.93269 0.96380 1.21505 0.95069 1.02073 0.96190 1.21949 0.99788 0.98980 0.96314 1.21017 0.94033 0.82099 0.97814 0.91355 1.45659 1.14680 1.17180 1.56977 1.19997 0.82083 0.87433 0.78536 1.90674 1.54710 1.58161 1.41144 1.23348 1.01808 0.97458 1.05282 1.85533 1.12423 1.20322 1.73889 1.23234 1.04353 1.00609 1.41069 0.90091 1.26127 0.94485 1.03698 0.94882 1.70190 1.06021 1.39587 1.39029 0.84905 0.78694 0.76238 0.78104 1.18061 1.19887 1.19912 1.21728 0.91642 0.98911 0.89937 0.91876 1.21898 1.01574 0.99171 0.97633 0.92546 0.92462 0.92472 0.91499 0.93239 0.92580 0.93481 0.94331 0.89785 0.89576 0.94208 0.92329 0.90645 0.94051 0.90040 0.74744 0.87817 0.87672 0.92016 0.92094 0.90637 0.92690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 9.19 71.98 0.66 -0.71 16 2 C -0.09 -0.99 2.94 -10.79 -0.03 -1.02 16 3 C -0.14 -1.86 9.08 71.98 0.65 -1.21 16 4 C 0.06 0.65 4.18 86.30 0.36 1.02 16 5 N -0.54 -7.60 3.37 -871.11 -2.94 -10.54 16 6 C 0.06 0.85 5.30 86.32 0.46 1.30 16 7 C -0.11 -1.98 5.93 30.65 0.18 -1.80 16 8 C -0.13 -2.92 5.67 30.67 0.17 -2.75 16 9 C 0.16 3.63 2.25 45.04 0.10 3.73 16 10 H 0.07 1.93 7.58 -2.39 -0.02 1.91 16 11 N -0.69 -18.52 3.82 -442.28 -1.69 -20.21 16 12 C 0.53 20.26 7.81 87.65 0.68 20.95 16 13 O -0.57 -26.71 15.53 -3.03 -0.05 -26.75 16 14 C -0.13 -5.25 6.16 71.23 0.44 -4.81 16 15 S -0.15 -8.42 20.57 -56.49 -1.16 -9.58 16 16 C -0.54 -31.61 9.50 67.95 0.65 -30.97 16 17 H 0.08 4.39 7.80 -2.91 -0.02 4.37 16 18 C 0.01 0.73 5.49 84.86 0.47 1.20 16 19 N -0.91 -56.63 13.22 21.65 0.29 -56.34 16 20 Si 1.00 44.15 29.55 68.60 2.03 46.18 16 21 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 22 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 23 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 24 C 0.09 1.42 2.15 44.94 0.10 1.52 16 25 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 26 C -0.15 -2.33 8.30 71.98 0.60 -1.73 16 27 H 0.06 0.52 8.14 -2.39 -0.02 0.51 16 28 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.07 0.80 6.54 -2.39 -0.02 0.78 16 31 H 0.05 0.67 8.14 -2.38 -0.02 0.65 16 32 H 0.06 0.90 7.75 -2.39 -0.02 0.88 16 33 H 0.05 0.62 8.14 -2.38 -0.02 0.60 16 34 H 0.04 0.42 8.04 -2.39 -0.02 0.40 16 35 H 0.08 0.96 5.51 -2.38 -0.01 0.95 16 36 H 0.09 1.07 6.47 -2.39 -0.02 1.05 16 37 H 0.04 0.51 8.14 -2.38 -0.02 0.49 16 38 H 0.06 1.24 7.73 -2.39 -0.02 1.22 16 39 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 41 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 42 H 0.42 9.46 7.95 -92.71 -0.74 8.72 16 43 H 0.10 3.92 8.14 -2.39 -0.02 3.90 16 44 H 0.11 3.94 8.14 -2.39 -0.02 3.92 16 45 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 46 H 0.06 1.09 7.65 -2.38 -0.02 1.07 16 47 H 0.07 0.93 6.42 -2.39 -0.02 0.91 16 48 H 0.05 0.99 8.13 -2.39 -0.02 0.97 16 Total: -1.00 -72.75 384.94 2.15 -70.60 By element: Atomic # 1 Polarization: 21.74 SS G_CDS: 0.19 Total: 21.92 kcal Atomic # 6 Polarization: -20.77 SS G_CDS: 5.49 Total: -15.28 kcal Atomic # 7 Polarization: -82.75 SS G_CDS: -4.34 Total: -87.09 kcal Atomic # 8 Polarization: -26.71 SS G_CDS: -0.05 Total: -26.75 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Atomic # 16 Polarization: -8.42 SS G_CDS: -1.16 Total: -9.58 kcal Total: -72.75 2.15 -70.60 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755715291.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.214 kcal (2) G-P(sol) polarization free energy of solvation -72.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds