Wall clock time and date at job start Tue Mar 31 2020 12:10:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52995 * 109.47374 * 2 1 4 4 C 1.53005 * 109.47305 * 120.00602 * 2 1 3 5 5 N 1.46897 * 109.47183 * 89.33190 * 4 2 1 6 6 C 1.46841 * 111.00329 * 63.03986 * 5 4 2 7 7 C 1.53037 * 109.52461 * 174.16035 * 6 5 4 8 8 C 1.53122 * 109.28059 * 59.17617 * 7 6 5 9 9 C 1.53119 * 109.15896 * 302.34952 * 8 7 6 10 10 H 1.09005 * 109.50348 * 297.66952 * 9 8 7 11 11 N 1.46496 * 109.50189 * 177.59325 * 9 8 7 12 12 C 1.34780 * 120.00264 * 84.99694 * 11 9 8 13 13 O 1.21290 * 119.99692 * 0.02562 * 12 11 9 14 14 C 1.50696 * 120.00666 * 179.97438 * 12 11 9 15 15 S 1.80997 * 109.47662 * 180.02562 * 14 12 11 16 16 C 1.76195 * 100.00021 * 180.02562 * 15 14 12 17 17 H 1.07994 * 120.00375 * 359.97438 * 16 15 14 18 18 C 1.38807 * 119.99731 * 180.02562 * 16 15 14 19 19 N 1.31626 * 119.99793 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99834 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47067 * 359.97438 * 20 18 16 22 22 H 1.48503 * 109.47018 * 119.99965 * 20 18 16 23 23 H 1.48508 * 109.46954 * 239.99757 * 20 18 16 24 24 C 1.46851 * 110.99702 * 298.82370 * 5 4 2 25 25 H 1.08997 * 109.46298 * 65.83009 * 24 5 4 26 26 C 1.52990 * 109.46504 * 305.85847 * 24 5 4 27 27 H 1.09008 * 109.47158 * 292.96570 * 1 2 3 28 28 H 1.08991 * 109.47503 * 52.96638 * 1 2 3 29 29 H 1.09003 * 109.47480 * 172.97435 * 1 2 3 30 30 H 1.09000 * 109.46597 * 239.99769 * 2 1 3 31 31 H 1.08998 * 109.47255 * 180.02562 * 3 2 1 32 32 H 1.08996 * 109.47314 * 300.00350 * 3 2 1 33 33 H 1.09000 * 109.46958 * 60.00493 * 3 2 1 34 34 H 1.09001 * 109.46871 * 329.33079 * 4 2 1 35 35 H 1.08999 * 109.47025 * 209.33161 * 4 2 1 36 36 H 1.08998 * 109.46557 * 54.13856 * 6 5 4 37 37 H 1.09007 * 109.45872 * 294.17462 * 6 5 4 38 38 H 1.08999 * 109.50260 * 299.23810 * 7 6 5 39 39 H 1.09002 * 109.53399 * 179.13468 * 7 6 5 40 40 H 1.08993 * 109.52213 * 182.44061 * 8 7 6 41 41 H 1.09000 * 109.51925 * 62.25051 * 8 7 6 42 42 H 0.96999 * 120.00441 * 264.99841 * 11 9 8 43 43 H 1.09005 * 109.46897 * 59.99776 * 14 12 11 44 44 H 1.09010 * 109.47044 * 300.00544 * 14 12 11 45 45 H 0.96999 * 120.00361 * 359.97438 * 19 18 16 46 46 H 1.09002 * 109.47421 * 304.06611 * 26 24 5 47 47 H 1.09005 * 109.47456 * 64.06666 * 26 24 5 48 48 H 1.09005 * 109.47039 * 184.07168 * 26 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 7 2.1880 -2.1542 0.9611 6 6 3.1953 -2.3797 -0.0833 7 6 3.4275 -3.8828 -0.2539 8 6 2.1077 -4.5579 -0.6373 9 6 1.0621 -4.2671 0.4429 10 1 1.3897 -4.6943 1.3908 11 7 -0.2196 -4.8614 0.0556 12 6 -0.4760 -6.1541 0.3383 13 8 0.3544 -6.8252 0.9138 14 6 -1.7946 -6.7654 -0.0596 15 16 -1.8355 -8.5001 0.4552 16 6 -3.4388 -8.9520 -0.1190 17 1 -4.0590 -8.2225 -0.6185 18 6 -3.9052 -10.2454 0.0716 19 7 -3.1494 -11.1344 0.6809 20 14 -5.6047 -10.7247 -0.5377 21 1 -6.2475 -9.5525 -1.1843 22 1 -5.4840 -11.8296 -1.5226 23 1 -6.4338 -11.1729 0.6099 24 6 0.8985 -2.7530 0.5934 25 1 0.5573 -2.3290 -0.3510 26 6 -0.1308 -2.4575 1.6860 27 1 -0.3634 0.4010 0.9463 28 1 -0.3634 0.6189 -0.8203 29 1 -0.3634 -1.0200 -0.1257 30 1 1.8932 -0.5139 -0.8900 31 1 3.1300 1.4424 -0.0005 32 1 1.6767 1.9563 -0.8899 33 1 1.6767 1.9562 0.8900 34 1 1.3277 -0.5861 2.0631 35 1 3.0058 -0.3074 1.5389 36 1 4.1301 -1.8981 0.2036 37 1 2.8434 -1.9574 -1.0246 38 1 3.7925 -4.3033 0.6831 39 1 4.1639 -4.0509 -1.0398 40 1 2.2590 -5.6343 -0.7175 41 1 1.7621 -4.1654 -1.5937 42 1 -0.8838 -4.3247 -0.4044 43 1 -1.9117 -6.7042 -1.1417 44 1 -2.6072 -6.2237 0.4248 45 1 -2.2665 -10.8858 0.9963 46 1 0.2432 -2.8174 2.6445 47 1 -0.3016 -1.3824 1.7432 48 1 -1.0674 -2.9622 1.4489 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755715292.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:04 Heat of formation + Delta-G solvation = -48.933589 kcal Electronic energy + Delta-G solvation = -24938.540685 eV Core-core repulsion = 21539.973137 eV Total energy + Delta-G solvation = -3398.567548 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.177 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.65218 -38.93576 -36.24775 -34.26098 -32.84964 -32.52091 -31.42102 -29.19743 -27.58581 -27.00523 -26.08107 -24.83485 -23.15437 -21.79309 -21.01610 -20.38717 -19.35383 -18.30769 -16.94374 -16.61639 -15.92986 -15.61563 -15.14055 -14.97441 -14.66237 -14.42845 -14.18941 -13.88736 -13.83783 -13.34924 -13.23228 -13.06579 -12.86457 -12.56984 -12.45249 -12.37192 -12.21683 -12.08307 -11.87507 -11.81825 -11.49045 -11.41590 -11.17275 -11.09315 -10.92037 -10.89637 -10.79262 -10.38180 -10.20671 -9.57796 -9.44970 -9.01353 -8.89393 -8.47781 -8.20800 -6.65838 -6.61734 -3.99230 2.88821 3.02805 3.33712 3.40667 3.43631 3.54375 3.83538 4.25113 4.33227 4.46196 4.54092 4.57401 4.64555 4.78835 4.87651 4.98391 5.03640 5.10585 5.19526 5.20748 5.22971 5.25844 5.35504 5.36986 5.42857 5.46235 5.48801 5.53873 5.58797 5.62858 5.68534 5.73259 5.75747 5.79704 5.87648 5.89645 5.97779 6.02438 6.07375 6.13866 6.24142 6.56401 6.81678 6.87302 7.66209 7.93778 8.50922 8.55912 9.27744 10.82405 Molecular weight = 314.18amu Principal moments of inertia in cm(-1) A = 0.026752 B = 0.002622 C = 0.002475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.391893 B =10677.014820 C =11309.504090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.138 4.138 3 C -0.143 4.143 4 C 0.056 3.944 5 N -0.526 5.526 6 C 0.052 3.948 7 C -0.114 4.114 8 C -0.133 4.133 9 C 0.155 3.845 10 H 0.096 0.904 11 N -0.732 5.732 12 C 0.533 3.467 13 O -0.515 6.515 14 C -0.131 4.131 15 S -0.116 6.116 16 C -0.607 4.607 17 H 0.066 0.934 18 C 0.034 3.966 19 N -0.885 5.885 20 Si 1.090 2.910 21 H -0.288 1.288 22 H -0.283 1.283 23 H -0.283 1.283 24 C 0.074 3.926 25 H 0.053 0.947 26 C -0.159 4.159 27 H 0.057 0.943 28 H 0.051 0.949 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.053 0.947 32 H 0.052 0.948 33 H 0.055 0.945 34 H 0.082 0.918 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.037 0.963 38 H 0.074 0.926 39 H 0.069 0.931 40 H 0.073 0.927 41 H 0.058 0.942 42 H 0.395 0.605 43 H 0.091 0.909 44 H 0.091 0.909 45 H 0.279 0.721 46 H 0.066 0.934 47 H 0.067 0.933 48 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.345 26.092 -2.751 28.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.158 4.158 3 C -0.201 4.201 4 C -0.072 4.072 5 N -0.250 5.250 6 C -0.076 4.076 7 C -0.153 4.153 8 C -0.172 4.172 9 C 0.050 3.950 10 H 0.114 0.886 11 N -0.386 5.386 12 C 0.319 3.681 13 O -0.389 6.389 14 C -0.282 4.282 15 S 0.111 5.889 16 C -0.755 4.755 17 H 0.084 0.916 18 C -0.176 4.176 19 N -0.520 5.520 20 Si 0.916 3.084 21 H -0.214 1.214 22 H -0.209 1.209 23 H -0.209 1.209 24 C -0.035 4.035 25 H 0.071 0.929 26 C -0.216 4.216 27 H 0.076 0.924 28 H 0.070 0.930 29 H 0.087 0.913 30 H 0.091 0.909 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.100 0.900 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.055 0.945 38 H 0.093 0.907 39 H 0.088 0.912 40 H 0.092 0.908 41 H 0.077 0.923 42 H 0.229 0.771 43 H 0.109 0.891 44 H 0.110 0.890 45 H 0.091 0.909 46 H 0.085 0.915 47 H 0.085 0.915 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 10.848 23.455 -1.419 25.881 hybrid contribution -0.652 2.833 -1.743 3.389 sum 10.197 26.287 -3.162 28.372 Atomic orbital electron populations 1.22321 0.95060 1.02643 1.01733 1.21865 0.96589 0.97142 1.00198 1.21797 1.00750 0.95735 1.01778 1.22427 1.01831 0.86197 0.96716 1.62071 1.07203 1.13045 1.42678 1.22169 0.95430 0.96915 0.93054 1.21545 0.97139 0.94244 1.02342 1.22005 0.95002 1.01921 0.98267 1.20861 0.83365 0.91587 0.99215 0.88631 1.45983 1.18442 1.11905 1.62229 1.20243 0.88606 0.81125 0.78166 1.90706 1.47800 1.60504 1.39914 1.23318 0.96712 1.03544 1.04617 1.84825 1.24387 1.01876 1.77860 1.23761 1.01500 1.02387 1.47854 0.91579 1.26057 1.05378 0.91510 0.94655 1.70732 1.11328 1.36109 1.33796 0.83249 0.73155 0.75507 0.76446 1.21426 1.20890 1.20885 1.21920 0.89886 0.93735 0.97953 0.92912 1.22150 0.98177 1.02124 0.99186 0.92370 0.93005 0.91267 0.90920 0.92749 0.92885 0.92574 0.89984 0.90613 0.90630 0.94542 0.90725 0.91241 0.90780 0.92300 0.77110 0.89081 0.89047 0.90903 0.91533 0.91462 0.91800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.05 7.49 37.15 0.28 -0.77 16 2 C -0.14 -0.89 2.35 -90.62 -0.21 -1.11 16 3 C -0.14 -0.80 9.03 37.16 0.34 -0.46 16 4 C 0.06 0.41 4.94 -3.82 -0.02 0.39 16 5 N -0.53 -4.68 4.69 -226.69 -1.06 -5.74 16 6 C 0.05 0.43 5.07 -3.84 -0.02 0.41 16 7 C -0.11 -1.09 6.09 -26.65 -0.16 -1.25 16 8 C -0.13 -1.55 5.58 -26.61 -0.15 -1.70 16 9 C 0.16 1.90 2.05 -67.85 -0.14 1.76 16 10 H 0.10 1.46 7.58 -51.93 -0.39 1.06 16 11 N -0.73 -9.72 4.34 -53.72 -0.23 -9.96 16 12 C 0.53 9.85 7.81 -10.99 -0.09 9.77 16 13 O -0.52 -11.61 15.53 5.55 0.09 -11.52 16 14 C -0.13 -2.64 6.16 36.00 0.22 -2.42 16 15 S -0.12 -3.13 19.60 -107.50 -2.11 -5.24 16 16 C -0.61 -17.57 9.50 30.94 0.29 -17.28 16 17 H 0.07 1.84 7.80 -52.49 -0.41 1.43 16 18 C 0.03 1.01 5.49 -17.43 -0.10 0.91 16 19 N -0.89 -27.70 13.67 55.49 0.76 -26.94 16 20 Si 1.09 25.17 29.92 -169.99 -5.09 20.08 16 21 H -0.29 -6.24 7.11 56.52 0.40 -5.84 16 22 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 23 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 24 C 0.07 0.69 1.31 -67.72 -0.09 0.60 16 25 H 0.05 0.47 5.52 -51.93 -0.29 0.18 16 26 C -0.16 -1.46 7.63 37.15 0.28 -1.18 16 27 H 0.06 0.36 7.28 -51.92 -0.38 -0.02 16 28 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.07 0.49 4.16 -51.93 -0.22 0.27 16 30 H 0.07 0.53 5.69 -51.93 -0.30 0.24 16 31 H 0.05 0.29 8.11 -51.93 -0.42 -0.13 16 32 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 34 H 0.08 0.60 5.91 -51.93 -0.31 0.29 16 35 H 0.08 0.51 7.80 -51.93 -0.40 0.11 16 36 H 0.08 0.55 8.10 -51.93 -0.42 0.13 16 37 H 0.04 0.29 6.23 -51.92 -0.32 -0.03 16 38 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.40 4.15 8.44 -40.82 -0.34 3.81 16 43 H 0.09 1.71 8.14 -51.91 -0.42 1.29 16 44 H 0.09 1.71 8.14 -51.91 -0.42 1.29 16 45 H 0.28 8.90 7.12 -40.82 -0.29 8.61 16 46 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 47 H 0.07 0.51 4.02 -51.93 -0.21 0.31 16 48 H 0.06 0.61 7.38 -51.93 -0.38 0.22 16 LS Contribution 372.13 15.07 5.61 5.61 Total: -1.00 -33.72 372.13 -9.70 -43.42 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: -8.11 Total: 2.61 kcal Atomic # 6 Polarization: -12.76 SS G_CDS: 0.44 Total: -12.32 kcal Atomic # 7 Polarization: -42.10 SS G_CDS: -0.54 Total: -42.64 kcal Atomic # 8 Polarization: -11.61 SS G_CDS: 0.09 Total: -11.52 kcal Atomic # 14 Polarization: 25.17 SS G_CDS: -5.09 Total: 20.08 kcal Atomic # 16 Polarization: -3.13 SS G_CDS: -2.11 Total: -5.24 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.72 -9.70 -43.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755715292.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.513 kcal (2) G-P(sol) polarization free energy of solvation -33.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds