Wall clock time and date at job start Tue Mar 31 2020 12:10:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52995 * 109.47374 * 2 1 4 4 C 1.53005 * 109.47305 * 120.00602 * 2 1 3 5 5 N 1.46897 * 109.47183 * 89.33190 * 4 2 1 6 6 C 1.46841 * 111.00329 * 63.03986 * 5 4 2 7 7 C 1.53037 * 109.52461 * 174.16035 * 6 5 4 8 8 C 1.53122 * 109.28059 * 59.17617 * 7 6 5 9 9 C 1.53119 * 109.15896 * 302.34952 * 8 7 6 10 10 H 1.09005 * 109.50348 * 297.66952 * 9 8 7 11 11 N 1.46496 * 109.50189 * 177.59325 * 9 8 7 12 12 C 1.34780 * 120.00264 * 84.99694 * 11 9 8 13 13 O 1.21290 * 119.99692 * 0.02562 * 12 11 9 14 14 C 1.50696 * 120.00666 * 179.97438 * 12 11 9 15 15 S 1.80997 * 109.47662 * 180.02562 * 14 12 11 16 16 C 1.76195 * 100.00021 * 180.02562 * 15 14 12 17 17 H 1.07994 * 120.00375 * 359.97438 * 16 15 14 18 18 C 1.38807 * 119.99731 * 180.02562 * 16 15 14 19 19 N 1.31626 * 119.99793 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99834 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47067 * 359.97438 * 20 18 16 22 22 H 1.48503 * 109.47018 * 119.99965 * 20 18 16 23 23 H 1.48508 * 109.46954 * 239.99757 * 20 18 16 24 24 C 1.46851 * 110.99702 * 298.82370 * 5 4 2 25 25 H 1.08997 * 109.46298 * 65.83009 * 24 5 4 26 26 C 1.52990 * 109.46504 * 305.85847 * 24 5 4 27 27 H 1.09008 * 109.47158 * 292.96570 * 1 2 3 28 28 H 1.08991 * 109.47503 * 52.96638 * 1 2 3 29 29 H 1.09003 * 109.47480 * 172.97435 * 1 2 3 30 30 H 1.09000 * 109.46597 * 239.99769 * 2 1 3 31 31 H 1.08998 * 109.47255 * 180.02562 * 3 2 1 32 32 H 1.08996 * 109.47314 * 300.00350 * 3 2 1 33 33 H 1.09000 * 109.46958 * 60.00493 * 3 2 1 34 34 H 1.09001 * 109.46871 * 329.33079 * 4 2 1 35 35 H 1.08999 * 109.47025 * 209.33161 * 4 2 1 36 36 H 1.08998 * 109.46557 * 54.13856 * 6 5 4 37 37 H 1.09007 * 109.45872 * 294.17462 * 6 5 4 38 38 H 1.08999 * 109.50260 * 299.23810 * 7 6 5 39 39 H 1.09002 * 109.53399 * 179.13468 * 7 6 5 40 40 H 1.08993 * 109.52213 * 182.44061 * 8 7 6 41 41 H 1.09000 * 109.51925 * 62.25051 * 8 7 6 42 42 H 0.96999 * 120.00441 * 264.99841 * 11 9 8 43 43 H 1.09005 * 109.46897 * 59.99776 * 14 12 11 44 44 H 1.09010 * 109.47044 * 300.00544 * 14 12 11 45 45 H 0.96999 * 120.00361 * 359.97438 * 19 18 16 46 46 H 1.09002 * 109.47421 * 304.06611 * 26 24 5 47 47 H 1.09005 * 109.47456 * 64.06666 * 26 24 5 48 48 H 1.09005 * 109.47039 * 184.07168 * 26 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 7 2.1880 -2.1542 0.9611 6 6 3.1953 -2.3797 -0.0833 7 6 3.4275 -3.8828 -0.2539 8 6 2.1077 -4.5579 -0.6373 9 6 1.0621 -4.2671 0.4429 10 1 1.3897 -4.6943 1.3908 11 7 -0.2196 -4.8614 0.0556 12 6 -0.4760 -6.1541 0.3383 13 8 0.3544 -6.8252 0.9138 14 6 -1.7946 -6.7654 -0.0596 15 16 -1.8355 -8.5001 0.4552 16 6 -3.4388 -8.9520 -0.1190 17 1 -4.0590 -8.2225 -0.6185 18 6 -3.9052 -10.2454 0.0716 19 7 -3.1494 -11.1344 0.6809 20 14 -5.6047 -10.7247 -0.5377 21 1 -6.2475 -9.5525 -1.1843 22 1 -5.4840 -11.8296 -1.5226 23 1 -6.4338 -11.1729 0.6099 24 6 0.8985 -2.7530 0.5934 25 1 0.5573 -2.3290 -0.3510 26 6 -0.1308 -2.4575 1.6860 27 1 -0.3634 0.4010 0.9463 28 1 -0.3634 0.6189 -0.8203 29 1 -0.3634 -1.0200 -0.1257 30 1 1.8932 -0.5139 -0.8900 31 1 3.1300 1.4424 -0.0005 32 1 1.6767 1.9563 -0.8899 33 1 1.6767 1.9562 0.8900 34 1 1.3277 -0.5861 2.0631 35 1 3.0058 -0.3074 1.5389 36 1 4.1301 -1.8981 0.2036 37 1 2.8434 -1.9574 -1.0246 38 1 3.7925 -4.3033 0.6831 39 1 4.1639 -4.0509 -1.0398 40 1 2.2590 -5.6343 -0.7175 41 1 1.7621 -4.1654 -1.5937 42 1 -0.8838 -4.3247 -0.4044 43 1 -1.9117 -6.7042 -1.1417 44 1 -2.6072 -6.2237 0.4248 45 1 -2.2665 -10.8858 0.9963 46 1 0.2432 -2.8174 2.6445 47 1 -0.3016 -1.3824 1.7432 48 1 -1.0674 -2.9622 1.4489 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755715292.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:03 Heat of formation + Delta-G solvation = -71.836998 kcal Electronic energy + Delta-G solvation = -24939.533852 eV Core-core repulsion = 21539.973137 eV Total energy + Delta-G solvation = -3399.560714 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.177 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.57876 -40.19781 -37.11428 -35.29441 -34.74819 -33.58088 -32.53934 -30.54030 -28.30937 -27.67702 -27.08251 -26.76096 -24.03630 -22.56836 -21.84703 -21.65679 -20.52141 -19.98327 -18.10263 -17.87662 -16.95462 -16.58377 -16.48798 -16.10529 -15.81428 -15.69816 -15.42251 -14.98310 -14.89109 -14.55923 -14.47199 -14.14200 -13.92008 -13.75939 -13.55819 -13.41946 -13.26150 -13.14619 -12.88929 -12.76197 -12.42310 -12.15857 -12.10400 -11.93778 -11.91578 -11.85695 -11.60050 -11.58257 -11.51915 -11.17686 -11.11823 -10.97709 -10.32122 -10.13758 -9.13585 -8.92944 -8.87058 -6.27840 1.18799 1.51478 1.51985 1.61904 1.78155 2.10259 2.33813 2.98357 3.02179 3.14717 3.54974 3.72747 3.83380 3.93757 3.95635 3.97570 4.10898 4.16527 4.18142 4.20117 4.34406 4.37031 4.49195 4.55256 4.61499 4.72050 4.78827 4.79918 4.86128 4.86838 4.89972 4.96282 5.01738 5.05852 5.11537 5.18513 5.24978 5.27277 5.31276 5.40705 5.43926 5.50681 5.64721 6.13107 6.14675 6.17511 6.42929 7.06021 7.16598 8.50619 Molecular weight = 314.18amu Principal moments of inertia in cm(-1) A = 0.026752 B = 0.002622 C = 0.002475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.391893 B =10677.014820 C =11309.504090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.133 4.133 3 C -0.141 4.141 4 C 0.058 3.942 5 N -0.540 5.540 6 C 0.056 3.944 7 C -0.111 4.111 8 C -0.130 4.130 9 C 0.155 3.845 10 H 0.062 0.938 11 N -0.705 5.705 12 C 0.536 3.464 13 O -0.563 6.563 14 C -0.109 4.109 15 S -0.196 6.196 16 C -0.611 4.611 17 H 0.075 0.925 18 C -0.021 4.021 19 N -0.914 5.914 20 Si 1.142 2.858 21 H -0.262 1.262 22 H -0.275 1.275 23 H -0.275 1.275 24 C 0.085 3.915 25 H 0.069 0.931 26 C -0.157 4.157 27 H 0.061 0.939 28 H 0.054 0.946 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.057 0.943 32 H 0.053 0.947 33 H 0.058 0.942 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.089 0.911 37 H 0.047 0.953 38 H 0.058 0.942 39 H 0.085 0.915 40 H 0.040 0.960 41 H 0.074 0.926 42 H 0.414 0.586 43 H 0.111 0.889 44 H 0.112 0.888 45 H 0.261 0.739 46 H 0.048 0.952 47 H 0.086 0.914 48 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.416 29.097 -4.213 30.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.152 4.152 3 C -0.198 4.198 4 C -0.069 4.069 5 N -0.264 5.264 6 C -0.072 4.072 7 C -0.149 4.149 8 C -0.169 4.169 9 C 0.050 3.950 10 H 0.080 0.920 11 N -0.358 5.358 12 C 0.322 3.678 13 O -0.441 6.441 14 C -0.260 4.260 15 S 0.031 5.969 16 C -0.759 4.759 17 H 0.093 0.907 18 C -0.224 4.224 19 N -0.550 5.550 20 Si 0.960 3.040 21 H -0.187 1.187 22 H -0.200 1.200 23 H -0.200 1.200 24 C -0.023 4.023 25 H 0.086 0.914 26 C -0.214 4.214 27 H 0.080 0.920 28 H 0.073 0.927 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.099 0.901 35 H 0.101 0.899 36 H 0.108 0.892 37 H 0.065 0.935 38 H 0.077 0.923 39 H 0.103 0.897 40 H 0.059 0.941 41 H 0.092 0.908 42 H 0.251 0.749 43 H 0.129 0.871 44 H 0.130 0.870 45 H 0.072 0.928 46 H 0.067 0.933 47 H 0.105 0.895 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 9.931 26.539 -2.897 28.484 hybrid contribution -0.267 2.033 -1.279 2.417 sum 9.663 28.572 -4.176 30.450 Atomic orbital electron populations 1.22320 0.95041 1.02378 1.02089 1.21802 0.96533 0.97528 0.99386 1.21774 1.01002 0.95069 1.01998 1.22456 1.02363 0.85015 0.97090 1.62040 1.06881 1.14330 1.43177 1.22162 0.95940 0.95630 0.93430 1.21528 0.96141 0.95197 1.02036 1.21955 0.96077 1.00153 0.98683 1.20941 0.82635 0.93482 0.97932 0.91987 1.45706 1.19326 1.10108 1.60674 1.19983 0.87521 0.82414 0.77921 1.90699 1.48959 1.62044 1.42376 1.23220 0.98505 0.98495 1.05791 1.85085 1.24655 1.08337 1.78849 1.24073 1.01749 1.02809 1.47272 0.90697 1.27853 1.08875 0.91769 0.93869 1.70857 1.11137 1.36986 1.35977 0.82645 0.68448 0.76397 0.76497 1.18664 1.20011 1.20006 1.21782 0.90568 0.91222 0.98764 0.91384 1.22145 0.97777 1.03327 0.98150 0.92025 0.92707 0.91749 0.91351 0.92372 0.92756 0.92285 0.90064 0.89880 0.89241 0.93477 0.92333 0.89686 0.94080 0.90766 0.74920 0.87078 0.87009 0.92820 0.93282 0.89526 0.92030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.63 7.49 71.98 0.54 -1.09 16 2 C -0.13 -1.33 2.35 -10.80 -0.03 -1.36 16 3 C -0.14 -1.18 9.03 71.98 0.65 -0.53 16 4 C 0.06 0.69 4.94 86.31 0.43 1.12 16 5 N -0.54 -8.61 4.69 -871.12 -4.09 -12.70 16 6 C 0.06 0.79 5.07 86.33 0.44 1.23 16 7 C -0.11 -2.00 6.09 30.65 0.19 -1.82 16 8 C -0.13 -2.96 5.58 30.67 0.17 -2.79 16 9 C 0.16 3.74 2.05 45.05 0.09 3.84 16 10 H 0.06 1.97 7.58 -2.38 -0.02 1.95 16 11 N -0.70 -18.02 4.34 -442.27 -1.92 -19.94 16 12 C 0.54 19.88 7.81 87.66 0.68 20.56 16 13 O -0.56 -26.38 15.53 -3.06 -0.05 -26.43 16 14 C -0.11 -4.31 6.16 71.23 0.44 -3.88 16 15 S -0.20 -10.89 19.60 -56.49 -1.11 -11.99 16 16 C -0.61 -35.43 9.50 67.96 0.65 -34.78 16 17 H 0.07 4.07 7.80 -2.91 -0.02 4.05 16 18 C -0.02 -1.21 5.49 84.86 0.47 -0.74 16 19 N -0.91 -58.52 13.67 21.65 0.30 -58.22 16 20 Si 1.14 49.68 29.92 68.60 2.05 51.73 16 21 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 22 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 23 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 24 C 0.09 1.46 1.31 44.93 0.06 1.51 16 25 H 0.07 1.00 5.52 -2.39 -0.01 0.99 16 26 C -0.16 -2.64 7.63 71.98 0.55 -2.09 16 27 H 0.06 0.59 7.28 -2.38 -0.02 0.57 16 28 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.06 0.71 4.16 -2.39 -0.01 0.70 16 30 H 0.07 0.78 5.69 -2.39 -0.01 0.76 16 31 H 0.06 0.45 8.11 -2.39 -0.02 0.43 16 32 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 33 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 34 H 0.08 0.99 5.91 -2.39 -0.01 0.98 16 35 H 0.08 0.90 7.80 -2.39 -0.02 0.88 16 36 H 0.09 1.07 8.10 -2.39 -0.02 1.05 16 37 H 0.05 0.60 6.23 -2.38 -0.01 0.59 16 38 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 42 H 0.41 7.67 8.44 -92.71 -0.78 6.88 16 43 H 0.11 3.98 8.14 -2.39 -0.02 3.96 16 44 H 0.11 4.00 8.14 -2.39 -0.02 3.98 16 45 H 0.26 17.39 7.12 -92.71 -0.66 16.73 16 46 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 47 H 0.09 1.12 4.02 -2.38 -0.01 1.11 16 48 H 0.06 1.05 7.38 -2.38 -0.02 1.04 16 Total: -1.00 -76.09 372.13 0.78 -75.31 By element: Atomic # 1 Polarization: 22.78 SS G_CDS: 0.28 Total: 23.05 kcal Atomic # 6 Polarization: -26.14 SS G_CDS: 5.32 Total: -20.81 kcal Atomic # 7 Polarization: -85.14 SS G_CDS: -5.71 Total: -90.85 kcal Atomic # 8 Polarization: -26.38 SS G_CDS: -0.05 Total: -26.43 kcal Atomic # 14 Polarization: 49.68 SS G_CDS: 2.05 Total: 51.73 kcal Atomic # 16 Polarization: -10.89 SS G_CDS: -1.11 Total: -11.99 kcal Total: -76.09 0.78 -75.31 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755715292.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.468 kcal (2) G-P(sol) polarization free energy of solvation -76.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds