Wall clock time and date at job start Tue Mar 31 2020 11:27:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46899 * 109.47368 * 2 1 4 4 C 1.46897 * 110.99849 * 160.29129 * 3 2 1 5 5 C 1.53003 * 109.47068 * 287.98044 * 4 3 2 6 6 C 1.46902 * 110.99880 * 284.24264 * 3 2 1 7 7 C 1.53002 * 109.46787 * 169.99838 * 6 3 2 8 8 C 1.53341 * 109.42047 * 295.12867 * 7 6 3 9 9 C 1.53196 * 109.15152 * 178.67800 * 8 7 6 10 10 N 1.46922 * 108.89264 * 54.57483 * 9 8 7 11 11 C 1.34777 * 120.63293 * 126.34758 * 10 9 8 12 12 O 1.21280 * 119.99549 * 359.97438 * 11 10 9 13 13 C 1.50694 * 120.00432 * 179.97438 * 11 10 9 14 14 S 1.80997 * 109.47285 * 179.97438 * 13 11 10 15 15 C 1.76201 * 100.00055 * 180.02562 * 14 13 11 16 16 H 1.07998 * 120.00005 * 0.02562 * 15 14 13 17 17 C 1.38801 * 120.00243 * 179.97438 * 15 14 13 18 18 N 1.31632 * 119.99839 * 359.97438 * 17 15 14 19 19 Si 1.86793 * 120.00347 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47563 * 89.99748 * 19 17 15 21 21 H 1.48504 * 109.47153 * 210.00274 * 19 17 15 22 22 H 1.48502 * 109.46879 * 329.99770 * 19 17 15 23 23 C 1.46928 * 118.73949 * 306.32161 * 10 9 8 24 24 C 1.53040 * 109.45726 * 174.99536 * 7 6 3 25 25 H 1.09004 * 109.47021 * 305.51123 * 1 2 3 26 26 H 1.08998 * 109.46971 * 65.50210 * 1 2 3 27 27 H 1.08998 * 109.47659 * 185.51000 * 1 2 3 28 28 H 1.09001 * 109.47034 * 240.00134 * 2 1 3 29 29 H 1.08997 * 109.46924 * 120.00146 * 2 1 3 30 30 H 1.08992 * 109.47437 * 47.98534 * 4 3 2 31 31 H 1.09009 * 109.47045 * 167.98783 * 4 3 2 32 32 H 1.09003 * 109.47320 * 179.24815 * 5 4 3 33 33 H 1.08993 * 109.47464 * 299.25616 * 5 4 3 34 34 H 1.09007 * 109.46768 * 59.25445 * 5 4 3 35 35 H 1.08991 * 109.47482 * 50.00076 * 6 3 2 36 36 H 1.09004 * 109.47373 * 289.99764 * 6 3 2 37 37 H 1.09005 * 109.45699 * 55.03270 * 7 6 3 38 38 H 1.08993 * 109.68835 * 58.71052 * 8 7 6 39 39 H 1.09005 * 109.47747 * 298.50955 * 8 7 6 40 40 H 1.09001 * 109.58113 * 294.71986 * 9 8 7 41 41 H 1.08996 * 109.59249 * 174.43747 * 9 8 7 42 42 H 1.09002 * 109.47444 * 300.00069 * 13 11 10 43 43 H 1.09003 * 109.47156 * 59.99693 * 13 11 10 44 44 H 0.96993 * 120.00081 * 179.97438 * 18 17 15 45 45 H 1.09006 * 109.58492 * 173.39825 * 23 10 9 46 46 H 1.09000 * 109.58739 * 293.67701 * 23 10 9 47 47 H 1.09003 * 109.49513 * 61.43931 * 24 7 6 48 48 H 1.08999 * 109.53095 * 301.35661 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4124 1.4508 0.4625 5 6 3.4627 1.1859 1.9686 6 6 1.8771 1.9937 -1.3293 7 6 2.1589 3.4947 -1.2357 8 6 1.0880 4.1610 -0.3635 9 6 1.3946 5.6575 -0.2468 10 7 1.5150 6.2251 -1.5966 11 6 0.7823 7.2968 -1.9587 12 8 0.0143 7.8017 -1.1674 13 6 0.9174 7.8679 -3.3467 14 16 -0.1885 9.2896 -3.5245 15 6 0.1638 9.7450 -5.1898 16 1 0.8848 9.1809 -5.7628 17 6 -0.4860 10.8280 -5.7655 18 7 -1.3658 11.5145 -5.0676 19 14 -0.1129 11.3103 -7.5311 20 1 -1.0332 10.5888 -8.4464 21 1 -0.2997 12.7745 -7.6943 22 1 1.2908 10.9512 -7.8563 23 6 2.4496 5.6026 -2.5440 24 6 2.1331 4.1067 -2.6381 25 1 -0.3633 0.5970 0.8366 26 1 -0.3633 0.4261 -0.9351 27 1 -0.3634 -1.0229 0.0987 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 4.0044 0.6986 -0.0587 31 1 3.8181 2.4409 0.2540 32 1 4.4975 1.2216 2.3094 33 1 2.8817 1.9460 2.4908 34 1 3.0449 0.2013 2.1784 35 1 0.8620 1.8368 -1.6939 36 1 2.5857 1.5333 -2.0178 37 1 3.1404 3.6527 -0.7886 38 1 1.0904 3.7107 0.6290 39 1 0.1089 4.0251 -0.8229 40 1 2.3310 5.7975 0.2933 41 1 0.5862 6.1555 0.2883 42 1 1.9472 8.1855 -3.5103 43 1 0.6511 7.1068 -4.0802 44 1 -1.8197 12.2716 -5.4697 45 1 2.3355 6.0628 -3.5256 46 1 3.4722 5.7405 -2.1925 47 1 1.1441 3.9710 -3.0761 48 1 2.8785 3.6157 -3.2637 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049079201.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:35 Heat of formation + Delta-G solvation = -45.125704 kcal Electronic energy + Delta-G solvation = -24427.495419 eV Core-core repulsion = 21029.092994 eV Total energy + Delta-G solvation = -3398.402426 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.177 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.03007 -38.69789 -36.81694 -33.43465 -32.41100 -32.17077 -31.45464 -29.93850 -28.74214 -26.44221 -25.45609 -23.46069 -23.29229 -23.04705 -21.13856 -20.17934 -18.95261 -17.66440 -16.67956 -16.10468 -15.79436 -15.54670 -15.26664 -15.12656 -14.78996 -14.50521 -14.27377 -13.96138 -13.67141 -13.61651 -13.21429 -13.05786 -12.76384 -12.61713 -12.53491 -12.25561 -12.03834 -11.96791 -11.83505 -11.79110 -11.48634 -11.27578 -11.05260 -11.04490 -11.00235 -10.74774 -10.67179 -10.60703 -10.41590 -9.77968 -9.27241 -9.05022 -8.62268 -8.42339 -8.19440 -6.47641 -6.19789 -3.90071 3.00817 3.12592 3.23214 3.27768 3.31640 3.52068 3.65285 4.21988 4.45508 4.57163 4.59675 4.73139 4.82820 4.85660 4.93616 5.05105 5.12963 5.14066 5.15210 5.19401 5.25262 5.26883 5.32739 5.36351 5.44607 5.49638 5.58009 5.61921 5.65451 5.67341 5.70554 5.76480 5.83068 5.88941 5.91920 5.93880 5.97452 6.07733 6.10450 6.15233 6.30803 6.76036 6.79252 6.79569 7.60904 7.65587 8.36890 8.64146 9.25329 10.87658 Molecular weight = 314.18amu Principal moments of inertia in cm(-1) A = 0.027654 B = 0.002425 C = 0.002380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.277577 B =11542.463716 C =11761.614455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.048 3.952 3 N -0.535 5.535 4 C 0.045 3.955 5 C -0.147 4.147 6 C 0.059 3.941 7 C -0.083 4.083 8 C -0.117 4.117 9 C 0.111 3.889 10 N -0.619 5.619 11 C 0.534 3.466 12 O -0.519 6.519 13 C -0.150 4.150 14 S -0.062 6.062 15 C -0.534 4.534 16 H 0.072 0.928 17 C 0.073 3.927 18 N -0.867 5.867 19 Si 0.918 3.082 20 H -0.277 1.277 21 H -0.282 1.282 22 H -0.272 1.272 23 C 0.110 3.890 24 C -0.131 4.131 25 H 0.064 0.936 26 H 0.053 0.947 27 H 0.055 0.945 28 H 0.031 0.969 29 H 0.073 0.927 30 H 0.030 0.970 31 H 0.078 0.922 32 H 0.056 0.944 33 H 0.063 0.937 34 H 0.052 0.948 35 H 0.077 0.923 36 H 0.032 0.968 37 H 0.072 0.928 38 H 0.084 0.916 39 H 0.063 0.937 40 H 0.059 0.941 41 H 0.091 0.909 42 H 0.088 0.912 43 H 0.088 0.912 44 H 0.268 0.732 45 H 0.089 0.911 46 H 0.065 0.935 47 H 0.070 0.930 48 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.792 -24.269 9.562 28.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.079 4.079 3 N -0.260 5.260 4 C -0.082 4.082 5 C -0.205 4.205 6 C -0.069 4.069 7 C -0.102 4.102 8 C -0.155 4.155 9 C -0.011 4.011 10 N -0.356 5.356 11 C 0.322 3.678 12 O -0.393 6.393 13 C -0.300 4.300 14 S 0.165 5.835 15 C -0.682 4.682 16 H 0.090 0.910 17 C -0.136 4.136 18 N -0.503 5.503 19 Si 0.745 3.255 20 H -0.203 1.203 21 H -0.208 1.208 22 H -0.197 1.197 23 C -0.013 4.013 24 C -0.169 4.169 25 H 0.083 0.917 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.050 0.950 29 H 0.091 0.909 30 H 0.048 0.952 31 H 0.097 0.903 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.071 0.929 35 H 0.095 0.905 36 H 0.050 0.950 37 H 0.090 0.910 38 H 0.102 0.898 39 H 0.081 0.919 40 H 0.077 0.923 41 H 0.109 0.891 42 H 0.106 0.894 43 H 0.106 0.894 44 H 0.078 0.922 45 H 0.107 0.893 46 H 0.083 0.917 47 H 0.088 0.912 48 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 9.231 -23.091 11.076 27.222 hybrid contribution 1.712 -0.848 -2.741 3.341 sum 10.943 -23.939 8.335 27.610 Atomic orbital electron populations 1.21767 0.94772 1.01345 1.02605 1.22110 0.96338 0.88898 1.00587 1.62034 1.20172 1.17742 1.26062 1.22151 0.88647 1.01376 0.96069 1.21786 1.01338 1.01997 0.95356 1.22201 1.01423 0.94325 0.88905 1.21241 0.99789 0.93430 0.95717 1.21895 0.98476 0.94119 1.01016 1.21547 1.02169 0.93585 0.83838 1.48106 1.42857 1.30929 1.13664 1.20309 0.79151 0.78999 0.89329 1.90684 1.36432 1.59079 1.53123 1.23546 1.06166 1.04779 0.95554 1.85408 1.51357 1.29410 1.17356 1.22857 1.29013 1.18175 0.98197 0.90990 1.24993 0.94564 0.95274 0.98792 1.70020 1.24824 1.18735 1.36701 0.86173 0.78752 0.77789 0.82811 1.20288 1.20759 1.19715 1.21660 0.92744 0.92775 0.94153 1.21957 1.02762 0.95429 0.96800 0.91672 0.92796 0.92587 0.95032 0.90857 0.95191 0.90346 0.92520 0.91745 0.92895 0.90501 0.95000 0.90978 0.89789 0.91855 0.92262 0.89087 0.89377 0.89365 0.92205 0.89289 0.91712 0.91164 0.91004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.94 37.16 0.37 -0.64 16 2 C 0.05 0.33 5.55 -3.82 -0.02 0.31 16 3 N -0.54 -4.07 3.83 -234.63 -0.90 -4.97 16 4 C 0.05 0.31 5.55 -3.82 -0.02 0.29 16 5 C -0.15 -0.91 9.99 37.16 0.37 -0.54 16 6 C 0.06 0.47 4.18 -3.82 -0.02 0.45 16 7 C -0.08 -0.71 2.10 -90.42 -0.19 -0.90 16 8 C -0.12 -1.20 5.29 -26.45 -0.14 -1.34 16 9 C 0.11 1.41 6.42 -3.71 -0.02 1.39 16 10 N -0.62 -9.06 2.97 -172.77 -0.51 -9.57 16 11 C 0.53 10.48 7.72 -10.99 -0.08 10.39 16 12 O -0.52 -12.20 15.27 5.56 0.08 -12.12 16 13 C -0.15 -3.11 4.50 36.00 0.16 -2.95 16 14 S -0.06 -1.71 20.57 -107.50 -2.21 -3.92 16 15 C -0.53 -15.32 9.50 30.94 0.29 -15.02 16 16 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 17 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 18 N -0.87 -26.35 13.22 55.49 0.73 -25.62 16 19 Si 0.92 21.50 29.55 -169.99 -5.02 16.48 16 20 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 21 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 22 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 23 C 0.11 1.23 6.34 -3.71 -0.02 1.20 16 24 C -0.13 -1.19 5.36 -26.61 -0.14 -1.33 16 25 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 26 H 0.05 0.40 6.97 -51.93 -0.36 0.04 16 27 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.03 0.22 8.00 -51.93 -0.42 -0.20 16 29 H 0.07 0.46 6.24 -51.93 -0.32 0.14 16 30 H 0.03 0.20 8.05 -51.93 -0.42 -0.22 16 31 H 0.08 0.55 5.87 -51.92 -0.30 0.24 16 32 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.05 0.32 6.52 -51.93 -0.34 -0.02 16 35 H 0.08 0.65 6.72 -51.93 -0.35 0.30 16 36 H 0.03 0.24 8.12 -51.93 -0.42 -0.18 16 37 H 0.07 0.60 6.10 -51.93 -0.32 0.28 16 38 H 0.08 0.83 7.73 -51.93 -0.40 0.43 16 39 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.09 1.36 7.00 -51.93 -0.36 0.99 16 42 H 0.09 1.69 7.94 -51.92 -0.41 1.28 16 43 H 0.09 1.69 7.69 -51.91 -0.40 1.29 16 44 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 45 H 0.09 1.02 5.93 -51.93 -0.31 0.72 16 46 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 47 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 48 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 382.95 15.07 5.77 5.77 Total: -1.00 -33.45 382.95 -10.10 -43.55 By element: Atomic # 1 Polarization: 5.58 SS G_CDS: -8.48 Total: -2.90 kcal Atomic # 6 Polarization: -7.12 SS G_CDS: 0.44 Total: -6.69 kcal Atomic # 7 Polarization: -39.49 SS G_CDS: -0.68 Total: -40.16 kcal Atomic # 8 Polarization: -12.20 SS G_CDS: 0.08 Total: -12.12 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: -1.71 SS G_CDS: -2.21 Total: -3.92 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.45 -10.10 -43.55 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049079201.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.577 kcal (2) G-P(sol) polarization free energy of solvation -33.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds