Wall clock time and date at job start Tue Mar 31 2020 11:27:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46899 * 109.47368 * 2 1 4 4 C 1.46897 * 110.99849 * 160.29129 * 3 2 1 5 5 C 1.53003 * 109.47068 * 287.98044 * 4 3 2 6 6 C 1.46902 * 110.99880 * 284.24264 * 3 2 1 7 7 C 1.53002 * 109.46787 * 169.99838 * 6 3 2 8 8 C 1.53341 * 109.42047 * 295.12867 * 7 6 3 9 9 C 1.53196 * 109.15152 * 178.67800 * 8 7 6 10 10 N 1.46922 * 108.89264 * 54.57483 * 9 8 7 11 11 C 1.34777 * 120.63293 * 126.34758 * 10 9 8 12 12 O 1.21280 * 119.99549 * 359.97438 * 11 10 9 13 13 C 1.50694 * 120.00432 * 179.97438 * 11 10 9 14 14 S 1.80997 * 109.47285 * 179.97438 * 13 11 10 15 15 C 1.76201 * 100.00055 * 180.02562 * 14 13 11 16 16 H 1.07998 * 120.00005 * 0.02562 * 15 14 13 17 17 C 1.38801 * 120.00243 * 179.97438 * 15 14 13 18 18 N 1.31632 * 119.99839 * 359.97438 * 17 15 14 19 19 Si 1.86793 * 120.00347 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47563 * 89.99748 * 19 17 15 21 21 H 1.48504 * 109.47153 * 210.00274 * 19 17 15 22 22 H 1.48502 * 109.46879 * 329.99770 * 19 17 15 23 23 C 1.46928 * 118.73949 * 306.32161 * 10 9 8 24 24 C 1.53040 * 109.45726 * 174.99536 * 7 6 3 25 25 H 1.09004 * 109.47021 * 305.51123 * 1 2 3 26 26 H 1.08998 * 109.46971 * 65.50210 * 1 2 3 27 27 H 1.08998 * 109.47659 * 185.51000 * 1 2 3 28 28 H 1.09001 * 109.47034 * 240.00134 * 2 1 3 29 29 H 1.08997 * 109.46924 * 120.00146 * 2 1 3 30 30 H 1.08992 * 109.47437 * 47.98534 * 4 3 2 31 31 H 1.09009 * 109.47045 * 167.98783 * 4 3 2 32 32 H 1.09003 * 109.47320 * 179.24815 * 5 4 3 33 33 H 1.08993 * 109.47464 * 299.25616 * 5 4 3 34 34 H 1.09007 * 109.46768 * 59.25445 * 5 4 3 35 35 H 1.08991 * 109.47482 * 50.00076 * 6 3 2 36 36 H 1.09004 * 109.47373 * 289.99764 * 6 3 2 37 37 H 1.09005 * 109.45699 * 55.03270 * 7 6 3 38 38 H 1.08993 * 109.68835 * 58.71052 * 8 7 6 39 39 H 1.09005 * 109.47747 * 298.50955 * 8 7 6 40 40 H 1.09001 * 109.58113 * 294.71986 * 9 8 7 41 41 H 1.08996 * 109.59249 * 174.43747 * 9 8 7 42 42 H 1.09002 * 109.47444 * 300.00069 * 13 11 10 43 43 H 1.09003 * 109.47156 * 59.99693 * 13 11 10 44 44 H 0.96993 * 120.00081 * 179.97438 * 18 17 15 45 45 H 1.09006 * 109.58492 * 173.39825 * 23 10 9 46 46 H 1.09000 * 109.58739 * 293.67701 * 23 10 9 47 47 H 1.09003 * 109.49513 * 61.43931 * 24 7 6 48 48 H 1.08999 * 109.53095 * 301.35661 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4124 1.4508 0.4625 5 6 3.4627 1.1859 1.9686 6 6 1.8771 1.9937 -1.3293 7 6 2.1589 3.4947 -1.2357 8 6 1.0880 4.1610 -0.3635 9 6 1.3946 5.6575 -0.2468 10 7 1.5150 6.2251 -1.5966 11 6 0.7823 7.2968 -1.9587 12 8 0.0143 7.8017 -1.1674 13 6 0.9174 7.8679 -3.3467 14 16 -0.1885 9.2896 -3.5245 15 6 0.1638 9.7450 -5.1898 16 1 0.8848 9.1809 -5.7628 17 6 -0.4860 10.8280 -5.7655 18 7 -1.3658 11.5145 -5.0676 19 14 -0.1129 11.3103 -7.5311 20 1 -1.0332 10.5888 -8.4464 21 1 -0.2997 12.7745 -7.6943 22 1 1.2908 10.9512 -7.8563 23 6 2.4496 5.6026 -2.5440 24 6 2.1331 4.1067 -2.6381 25 1 -0.3633 0.5970 0.8366 26 1 -0.3633 0.4261 -0.9351 27 1 -0.3634 -1.0229 0.0987 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 4.0044 0.6986 -0.0587 31 1 3.8181 2.4409 0.2540 32 1 4.4975 1.2216 2.3094 33 1 2.8817 1.9460 2.4908 34 1 3.0449 0.2013 2.1784 35 1 0.8620 1.8368 -1.6939 36 1 2.5857 1.5333 -2.0178 37 1 3.1404 3.6527 -0.7886 38 1 1.0904 3.7107 0.6290 39 1 0.1089 4.0251 -0.8229 40 1 2.3310 5.7975 0.2933 41 1 0.5862 6.1555 0.2883 42 1 1.9472 8.1855 -3.5103 43 1 0.6511 7.1068 -4.0802 44 1 -1.8197 12.2716 -5.4697 45 1 2.3355 6.0628 -3.5256 46 1 3.4722 5.7405 -2.1925 47 1 1.1441 3.9710 -3.0761 48 1 2.8785 3.6157 -3.2637 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049079201.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:34 Heat of formation + Delta-G solvation = -65.674397 kcal Electronic energy + Delta-G solvation = -24428.386478 eV Core-core repulsion = 21029.092994 eV Total energy + Delta-G solvation = -3399.293484 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.177 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.20578 -39.58038 -37.87736 -34.59275 -34.47845 -32.68410 -32.49566 -30.88568 -29.94305 -27.71417 -27.21144 -24.25666 -24.04382 -23.84794 -21.97264 -20.96481 -20.24693 -19.47869 -18.13242 -16.94639 -16.86658 -16.76187 -16.59063 -16.34303 -15.86598 -15.80036 -15.20698 -14.87877 -14.72930 -14.72154 -14.46935 -14.15452 -14.00435 -13.70757 -13.40706 -13.17300 -13.14867 -13.01443 -12.89032 -12.66763 -12.59495 -12.50070 -12.34004 -12.17095 -12.15017 -11.71656 -11.69327 -11.45789 -11.35620 -11.15576 -11.14193 -10.81436 -10.25915 -9.64431 -9.17805 -8.67739 -8.34351 -6.13053 1.26038 1.42784 1.46375 1.56960 1.59007 2.14158 2.27727 2.95942 2.99628 3.26105 3.66543 3.75087 3.87997 3.96957 4.08155 4.19200 4.24094 4.28775 4.32915 4.35793 4.41628 4.45700 4.53644 4.54895 4.64652 4.66445 4.74680 4.80028 4.82478 4.87091 4.94997 5.01306 5.03582 5.09747 5.13656 5.16684 5.19886 5.24815 5.40088 5.41648 5.43551 5.51661 5.65851 6.19931 6.22687 6.25189 6.32907 7.06532 7.16656 8.75022 Molecular weight = 314.18amu Principal moments of inertia in cm(-1) A = 0.027654 B = 0.002425 C = 0.002380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.277577 B =11542.463716 C =11761.614455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.049 3.951 3 N -0.545 5.545 4 C 0.045 3.955 5 C -0.144 4.144 6 C 0.064 3.936 7 C -0.075 4.075 8 C -0.104 4.104 9 C 0.109 3.891 10 N -0.605 5.605 11 C 0.530 3.470 12 O -0.570 6.570 13 C -0.122 4.122 14 S -0.155 6.155 15 C -0.544 4.544 16 H 0.083 0.917 17 C 0.012 3.988 18 N -0.912 5.912 19 Si 1.000 3.000 20 H -0.268 1.268 21 H -0.278 1.278 22 H -0.257 1.257 23 C 0.101 3.899 24 C -0.124 4.124 25 H 0.054 0.946 26 H 0.045 0.955 27 H 0.066 0.934 28 H 0.034 0.966 29 H 0.079 0.921 30 H 0.034 0.966 31 H 0.080 0.920 32 H 0.065 0.935 33 H 0.054 0.946 34 H 0.053 0.947 35 H 0.068 0.932 36 H 0.041 0.959 37 H 0.085 0.915 38 H 0.091 0.909 39 H 0.044 0.956 40 H 0.082 0.918 41 H 0.062 0.938 42 H 0.107 0.893 43 H 0.106 0.894 44 H 0.271 0.729 45 H 0.087 0.913 46 H 0.091 0.909 47 H 0.057 0.943 48 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.361 -26.362 8.297 30.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.078 4.078 3 N -0.270 5.270 4 C -0.082 4.082 5 C -0.202 4.202 6 C -0.063 4.063 7 C -0.094 4.094 8 C -0.143 4.143 9 C -0.013 4.013 10 N -0.340 5.340 11 C 0.318 3.682 12 O -0.449 6.449 13 C -0.273 4.273 14 S 0.072 5.928 15 C -0.692 4.692 16 H 0.101 0.899 17 C -0.193 4.193 18 N -0.548 5.548 19 Si 0.821 3.179 20 H -0.193 1.193 21 H -0.203 1.203 22 H -0.181 1.181 23 C -0.021 4.021 24 C -0.163 4.163 25 H 0.073 0.927 26 H 0.065 0.935 27 H 0.085 0.915 28 H 0.052 0.948 29 H 0.098 0.902 30 H 0.052 0.948 31 H 0.098 0.902 32 H 0.084 0.916 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.086 0.914 36 H 0.059 0.941 37 H 0.103 0.897 38 H 0.109 0.891 39 H 0.063 0.937 40 H 0.100 0.900 41 H 0.081 0.919 42 H 0.125 0.875 43 H 0.124 0.876 44 H 0.080 0.920 45 H 0.105 0.895 46 H 0.109 0.891 47 H 0.075 0.925 48 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 11.842 -25.244 9.816 29.561 hybrid contribution 0.971 -0.325 -2.243 2.465 sum 12.814 -25.570 7.573 29.586 Atomic orbital electron populations 1.21741 0.95035 1.01753 1.01693 1.22116 0.96075 0.88629 1.01001 1.62032 1.20870 1.18212 1.25896 1.22176 0.88127 1.01576 0.96321 1.21759 1.01788 1.01677 0.94960 1.22097 1.01187 0.93720 0.89329 1.21186 0.99493 0.93705 0.95015 1.21776 0.98292 0.92405 1.01781 1.21704 1.02312 0.94655 0.82636 1.48141 1.41717 1.29113 1.14989 1.20159 0.79478 0.80128 0.88463 1.90666 1.38979 1.61132 1.54143 1.23355 1.04943 1.01873 0.97091 1.85617 1.54747 1.33916 1.18525 1.23182 1.29311 1.18631 0.98051 0.89868 1.26159 0.94061 0.95032 1.04024 1.70191 1.26130 1.19414 1.39106 0.84933 0.79312 0.77446 0.76160 1.19282 1.20312 1.18068 1.22017 0.93020 0.93822 0.93247 1.21925 1.02953 0.93960 0.97450 0.92724 0.93549 0.91520 0.94765 0.90229 0.94777 0.90196 0.91571 0.92714 0.92818 0.91385 0.94059 0.89663 0.89094 0.93736 0.89995 0.91921 0.87463 0.87595 0.92001 0.89475 0.89104 0.92465 0.88211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 9.94 71.98 0.72 -1.11 16 2 C 0.05 0.59 5.55 86.30 0.48 1.07 16 3 N -0.55 -7.14 3.83 -896.23 -3.43 -10.57 16 4 C 0.05 0.50 5.55 86.30 0.48 0.98 16 5 C -0.14 -1.49 9.99 71.98 0.72 -0.77 16 6 C 0.06 0.86 4.18 86.30 0.36 1.22 16 7 C -0.08 -1.08 2.10 -10.67 -0.02 -1.10 16 8 C -0.10 -2.02 5.29 30.77 0.16 -1.86 16 9 C 0.11 2.68 6.42 86.36 0.55 3.24 16 10 N -0.61 -17.05 2.97 -818.90 -2.43 -19.48 16 11 C 0.53 20.97 7.72 87.65 0.68 21.65 16 12 O -0.57 -27.99 15.27 -3.03 -0.05 -28.04 16 13 C -0.12 -5.01 4.50 71.23 0.32 -4.69 16 14 S -0.16 -8.84 20.57 -56.49 -1.16 -10.00 16 15 C -0.54 -31.37 9.50 67.95 0.65 -30.72 16 16 H 0.08 4.43 7.80 -2.91 -0.02 4.41 16 17 C 0.01 0.68 5.49 84.86 0.47 1.15 16 18 N -0.91 -56.64 13.22 21.65 0.29 -56.36 16 19 Si 1.00 43.78 29.55 68.60 2.03 45.81 16 20 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 21 H -0.28 -11.86 7.11 99.48 0.71 -11.16 16 22 H -0.26 -10.49 7.11 99.48 0.71 -9.79 16 23 C 0.10 1.95 6.34 86.36 0.55 2.50 16 24 C -0.12 -1.88 5.36 30.67 0.16 -1.71 16 25 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 26 H 0.05 0.65 6.97 -2.39 -0.02 0.63 16 27 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.03 0.40 8.00 -2.39 -0.02 0.38 16 29 H 0.08 0.85 6.24 -2.39 -0.01 0.84 16 30 H 0.03 0.36 8.05 -2.39 -0.02 0.34 16 31 H 0.08 0.86 5.87 -2.38 -0.01 0.84 16 32 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.05 0.54 6.52 -2.38 -0.02 0.52 16 35 H 0.07 1.05 6.72 -2.39 -0.02 1.03 16 36 H 0.04 0.50 8.12 -2.39 -0.02 0.48 16 37 H 0.09 1.07 6.10 -2.38 -0.01 1.06 16 38 H 0.09 1.68 7.73 -2.39 -0.02 1.66 16 39 H 0.04 1.04 8.14 -2.38 -0.02 1.02 16 40 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 41 H 0.06 1.93 7.00 -2.39 -0.02 1.91 16 42 H 0.11 3.99 7.94 -2.39 -0.02 3.97 16 43 H 0.11 3.97 7.69 -2.39 -0.02 3.95 16 44 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 45 H 0.09 1.75 5.93 -2.38 -0.01 1.74 16 46 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 47 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 48 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 Total: -1.00 -75.42 382.95 2.43 -73.00 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: 0.92 Total: 15.82 kcal Atomic # 6 Polarization: -16.44 SS G_CDS: 6.27 Total: -10.17 kcal Atomic # 7 Polarization: -80.83 SS G_CDS: -5.58 Total: -86.41 kcal Atomic # 8 Polarization: -27.99 SS G_CDS: -0.05 Total: -28.04 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Atomic # 16 Polarization: -8.84 SS G_CDS: -1.16 Total: -10.00 kcal Total: -75.42 2.43 -73.00 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049079201.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.323 kcal (2) G-P(sol) polarization free energy of solvation -75.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds