Wall clock time and date at job start Tue Mar 31 2020 11:45:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46492 * 109.46964 * 2 1 4 4 C 1.46500 * 120.00213 * 89.99985 * 3 2 1 5 5 C 1.50706 * 109.47299 * 89.99368 * 4 3 2 6 6 H 1.07998 * 119.99503 * 0.02562 * 5 4 3 7 7 C 1.37871 * 120.00434 * 180.02562 * 5 4 3 8 8 N 1.31516 * 119.99826 * 359.72891 * 7 5 4 9 9 Si 1.86800 * 120.00406 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47364 * 179.72558 * 9 7 5 11 11 H 1.48508 * 109.46883 * 299.72681 * 9 7 5 12 12 H 1.48497 * 109.46870 * 59.72491 * 9 7 5 13 13 C 1.34776 * 120.00340 * 269.99855 * 3 2 1 14 14 O 1.21283 * 120.00358 * 180.02562 * 13 3 2 15 15 C 1.50700 * 119.99688 * 359.97438 * 13 3 2 16 16 N 1.46901 * 109.47159 * 179.97438 * 15 13 3 17 17 C 1.46900 * 110.99666 * 66.05040 * 16 15 13 18 18 C 1.46904 * 110.99922 * 190.00377 * 16 15 13 19 19 H 1.09001 * 110.01687 * 300.69794 * 18 16 15 20 20 C 1.54262 * 110.03454 * 62.09358 * 18 16 15 21 21 C 1.54889 * 104.19547 * 142.89455 * 20 18 16 22 22 C 1.54889 * 102.74852 * 322.05611 * 21 20 18 23 23 H 1.09003 * 110.48899 * 279.13158 * 22 21 20 24 24 S 1.81399 * 110.48765 * 156.62427 * 22 21 20 25 25 C 1.81393 * 103.00189 * 66.45279 * 24 22 21 26 26 C 1.53878 * 110.02986 * 179.31206 * 18 16 15 27 27 H 1.08995 * 109.47416 * 299.99790 * 1 2 3 28 28 H 1.09004 * 109.47270 * 59.99907 * 1 2 3 29 29 H 1.09008 * 109.47418 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47173 * 239.99641 * 2 1 3 31 31 H 1.08998 * 109.46859 * 120.00090 * 2 1 3 32 32 H 1.09004 * 109.47078 * 330.00130 * 4 3 2 33 33 H 1.08993 * 109.47364 * 209.99901 * 4 3 2 34 34 H 0.97000 * 120.00236 * 0.27947 * 8 7 5 35 35 H 1.08999 * 109.47673 * 300.00630 * 15 13 3 36 36 H 1.09002 * 109.47028 * 60.00354 * 15 13 3 37 37 H 1.08998 * 109.47089 * 60.00522 * 17 16 15 38 38 H 1.08999 * 109.46973 * 180.02562 * 17 16 15 39 39 H 1.08999 * 109.47224 * 299.99991 * 17 16 15 40 40 H 1.09001 * 110.48927 * 261.57493 * 20 18 16 41 41 H 1.09000 * 110.48532 * 24.21681 * 20 18 16 42 42 H 1.08994 * 110.75946 * 80.37293 * 21 20 18 43 43 H 1.09004 * 110.75639 * 203.74489 * 21 20 18 44 44 H 1.09001 * 109.47357 * 300.00060 * 25 24 22 45 45 H 1.08994 * 109.47522 * 60.00081 * 25 24 22 46 46 H 1.09005 * 109.47478 * 180.02562 * 25 24 22 47 47 H 1.09000 * 110.03136 * 0.02562 * 26 18 16 48 48 H 1.08997 * 110.02975 * 121.42955 * 26 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0718 1.2687 5 6 3.6857 1.8350 1.7039 6 1 4.3427 1.2308 1.0959 7 6 4.1490 2.3895 2.8780 8 7 3.3505 3.1297 3.6156 9 14 5.9134 2.0965 3.4170 10 1 6.1627 2.8015 4.7001 11 1 6.1397 0.6403 3.6002 12 1 6.8405 2.6148 2.3792 13 6 2.2429 2.0166 -1.1672 14 8 2.6476 3.1599 -1.1672 15 6 1.9924 1.3059 -2.4723 16 7 2.3099 2.2062 -3.5888 17 6 3.7464 2.5110 -3.6271 18 6 1.8576 1.6399 -4.8666 19 1 2.3391 0.6774 -5.0395 20 6 0.3244 1.4695 -4.8560 21 6 -0.1067 1.8200 -6.3018 22 6 0.8383 2.9920 -6.6656 23 1 0.4646 3.9271 -6.2484 24 16 1.0166 3.1285 -8.4657 25 6 -0.6454 3.6158 -9.0047 26 6 2.1855 2.6074 -6.0174 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.5816 1.6877 2.0284 33 1 2.0955 3.1410 1.1384 34 1 2.4343 3.2821 3.3357 35 1 2.6228 0.4187 -2.5298 36 1 0.9445 1.0114 -2.5302 37 1 4.3107 1.5869 -3.7520 38 1 3.9538 3.1795 -4.4627 39 1 4.0405 2.9932 -2.6949 40 1 0.0566 0.4403 -4.6169 41 1 -0.1310 2.1583 -4.1445 42 1 0.0537 0.9731 -6.9688 43 1 -1.1480 2.1413 -6.3272 44 1 -1.3620 2.8486 -8.7117 45 1 -0.9158 4.5628 -8.5376 46 1 -0.6573 3.7286 -10.0888 47 1 2.6806 3.4969 -5.6278 48 1 2.8253 2.1141 -6.7490 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075921570.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:45:33 Heat of formation + Delta-G solvation = -35.777429 kcal Electronic energy + Delta-G solvation = -25004.834987 eV Core-core repulsion = 21606.837933 eV Total energy + Delta-G solvation = -3397.997054 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.177 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.75824 -38.50773 -35.63143 -34.82634 -33.06382 -30.09479 -29.79343 -29.37164 -28.50574 -27.55372 -26.14953 -23.88375 -23.06830 -22.28147 -21.08568 -19.72918 -18.49185 -17.05416 -16.95510 -16.66821 -16.17750 -15.44915 -15.19355 -15.13167 -14.36040 -13.98301 -13.90526 -13.80385 -13.67032 -13.62768 -13.49956 -13.34600 -12.73092 -12.55564 -12.39047 -12.13964 -11.96748 -11.66401 -11.61412 -11.36857 -11.33045 -11.20375 -11.05708 -10.99515 -10.94638 -10.86283 -10.69579 -10.52398 -10.09988 -10.09722 -9.11472 -8.94568 -8.38027 -8.16041 -7.95619 -7.61187 -6.37652 -4.09623 1.42538 2.29308 3.38227 3.42968 3.46896 3.56952 3.64606 4.15088 4.17909 4.29582 4.54053 4.80585 4.81513 4.88074 4.99460 5.02453 5.14791 5.17288 5.20752 5.24908 5.31093 5.36622 5.37471 5.43412 5.47656 5.54264 5.56446 5.65379 5.69365 5.75296 5.77623 5.86905 5.88576 5.95847 6.05689 6.14023 6.38899 6.42661 6.79918 7.02100 7.14902 7.20937 7.44481 8.05251 8.32689 8.44171 8.78866 9.07823 9.60173 10.99549 Molecular weight = 314.18amu Principal moments of inertia in cm(-1) A = 0.023693 B = 0.002781 C = 0.002614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.491316 B =10065.600752 C =10707.950043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.596 5.596 4 C 0.238 3.762 5 C -0.605 4.605 6 H 0.049 0.951 7 C 0.019 3.981 8 N -0.909 5.909 9 Si 1.071 2.929 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.288 1.288 13 C 0.508 3.492 14 O -0.524 6.524 15 C 0.037 3.963 16 N -0.516 5.516 17 C 0.014 3.986 18 C 0.084 3.916 19 H 0.046 0.954 20 C -0.117 4.117 21 C -0.115 4.115 22 C -0.052 4.052 23 H 0.094 0.906 24 S -0.267 6.267 25 C -0.121 4.121 26 C -0.096 4.096 27 H 0.059 0.941 28 H 0.051 0.949 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.081 0.919 32 H 0.020 0.980 33 H 0.033 0.967 34 H 0.267 0.733 35 H 0.056 0.944 36 H 0.097 0.903 37 H 0.018 0.982 38 H 0.068 0.932 39 H 0.096 0.904 40 H 0.068 0.932 41 H 0.082 0.918 42 H 0.079 0.921 43 H 0.068 0.932 44 H 0.076 0.924 45 H 0.075 0.925 46 H 0.098 0.902 47 H 0.090 0.910 48 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.889 -6.374 -21.654 24.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.017 4.017 3 N -0.329 5.329 4 C 0.118 3.882 5 C -0.643 4.643 6 H 0.068 0.932 7 C -0.185 4.185 8 N -0.546 5.546 9 Si 0.899 3.101 10 H -0.207 1.207 11 H -0.215 1.215 12 H -0.214 1.214 13 C 0.293 3.707 14 O -0.400 6.400 15 C -0.095 4.095 16 N -0.240 5.240 17 C -0.134 4.134 18 C -0.026 4.026 19 H 0.064 0.936 20 C -0.157 4.157 21 C -0.155 4.155 22 C -0.180 4.180 23 H 0.112 0.888 24 S -0.039 6.039 25 C -0.289 4.289 26 C -0.135 4.135 27 H 0.079 0.921 28 H 0.070 0.930 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.100 0.900 32 H 0.038 0.962 33 H 0.051 0.949 34 H 0.078 0.922 35 H 0.073 0.927 36 H 0.115 0.885 37 H 0.036 0.964 38 H 0.086 0.914 39 H 0.114 0.886 40 H 0.087 0.913 41 H 0.101 0.899 42 H 0.098 0.902 43 H 0.087 0.913 44 H 0.095 0.905 45 H 0.095 0.905 46 H 0.116 0.884 47 H 0.108 0.892 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -6.918 -5.099 -21.032 22.720 hybrid contribution -1.818 -1.050 -0.636 2.194 sum -8.735 -6.149 -21.668 24.158 Atomic orbital electron populations 1.22225 0.96766 1.01445 1.02285 1.21400 0.93485 0.84207 1.02629 1.48062 1.64352 1.13170 1.07324 1.19289 0.96756 0.93094 0.79030 1.22233 0.96985 1.35695 1.09431 0.93219 1.25795 1.05825 0.93501 0.93378 1.70801 1.07933 1.36075 1.39746 0.83520 0.74300 0.76007 0.76310 1.20660 1.21504 1.21422 1.20143 0.78739 0.87073 0.84698 1.90632 1.44746 1.17818 1.86768 1.22077 1.02329 0.94275 0.90774 1.61834 1.17767 1.43340 1.01088 1.22648 0.86174 0.99711 1.04827 1.22277 0.95601 0.95645 0.89088 0.93620 1.22482 0.94639 1.01834 0.96709 1.22824 0.98373 0.97250 0.97045 1.24046 1.00137 1.02041 0.91812 0.88753 1.86844 1.17770 1.91245 1.08014 1.23347 0.96397 1.04173 1.05027 1.22103 0.94890 1.00688 0.95791 0.92149 0.93027 0.92086 0.91839 0.90030 0.96219 0.94913 0.92228 0.92652 0.88531 0.96373 0.91375 0.88595 0.91302 0.89925 0.90228 0.91295 0.90515 0.90548 0.88359 0.89199 0.90826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.20 10.24 37.16 0.38 -1.82 16 2 C 0.11 1.70 5.93 -4.05 -0.02 1.68 16 3 N -0.60 -12.54 2.46 -175.06 -0.43 -12.97 16 4 C 0.24 6.19 4.47 -5.19 -0.02 6.16 16 5 C -0.60 -17.30 9.39 -34.44 -0.32 -17.63 16 6 H 0.05 1.44 7.81 -52.49 -0.41 1.03 16 7 C 0.02 0.56 5.46 -17.82 -0.10 0.46 16 8 N -0.91 -27.85 13.65 55.43 0.76 -27.09 16 9 Si 1.07 25.68 29.90 -169.99 -5.08 20.59 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 12 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 13 C 0.51 10.52 7.40 -10.99 -0.08 10.43 16 14 O -0.52 -13.12 13.89 5.56 0.08 -13.04 16 15 C 0.04 0.55 3.86 -4.98 -0.02 0.53 16 16 N -0.52 -7.52 4.29 -234.98 -1.01 -8.53 16 17 C 0.01 0.21 8.90 60.06 0.53 0.74 16 18 C 0.08 0.93 2.67 -66.59 -0.18 0.75 16 19 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 20 C -0.12 -1.12 5.09 -25.07 -0.13 -1.25 16 21 C -0.12 -0.95 6.21 -24.74 -0.15 -1.10 16 22 C -0.05 -0.49 3.38 -25.02 -0.08 -0.57 16 23 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 24 S -0.27 -2.55 21.65 -107.50 -2.33 -4.87 16 25 C -0.12 -0.81 10.62 101.05 1.07 0.27 16 26 C -0.10 -1.01 5.50 -25.55 -0.14 -1.15 16 27 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.05 0.63 7.22 -51.93 -0.38 0.26 16 29 H 0.06 0.63 8.14 -51.92 -0.42 0.21 16 30 H 0.06 0.84 6.44 -51.93 -0.33 0.51 16 31 H 0.08 1.37 8.07 -51.93 -0.42 0.95 16 32 H 0.02 0.51 7.94 -51.93 -0.41 0.10 16 33 H 0.03 0.96 7.28 -51.93 -0.38 0.58 16 34 H 0.27 8.14 7.22 -40.82 -0.29 7.85 16 35 H 0.06 0.78 7.38 -51.93 -0.38 0.39 16 36 H 0.10 1.25 5.83 -51.93 -0.30 0.94 16 37 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 38 H 0.07 0.90 6.01 -51.93 -0.31 0.59 16 39 H 0.10 1.83 5.88 -51.93 -0.31 1.53 16 40 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.08 0.91 7.92 -51.93 -0.41 0.49 16 42 H 0.08 0.64 8.05 -51.93 -0.42 0.22 16 43 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.08 0.45 8.14 -51.92 -0.42 0.03 16 45 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.10 0.55 8.14 -51.92 -0.42 0.13 16 47 H 0.09 1.05 6.15 -51.93 -0.32 0.73 16 48 H 0.07 0.75 7.80 -51.93 -0.40 0.35 16 LS Contribution 384.70 15.07 5.80 5.80 Total: -1.00 -33.34 384.70 -9.98 -43.33 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: -8.50 Total: -0.72 kcal Atomic # 6 Polarization: -3.22 SS G_CDS: 0.74 Total: -2.49 kcal Atomic # 7 Polarization: -47.92 SS G_CDS: -0.68 Total: -48.60 kcal Atomic # 8 Polarization: -13.12 SS G_CDS: 0.08 Total: -13.04 kcal Atomic # 14 Polarization: 25.68 SS G_CDS: -5.08 Total: 20.59 kcal Atomic # 16 Polarization: -2.55 SS G_CDS: -2.33 Total: -4.87 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.34 -9.98 -43.33 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075921570.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.549 kcal (2) G-P(sol) polarization free energy of solvation -33.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds