Wall clock time and date at job start Tue Mar 31 2020 11:45:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46492 * 109.46964 * 2 1 4 4 C 1.46500 * 120.00213 * 89.99985 * 3 2 1 5 5 C 1.50706 * 109.47299 * 89.99368 * 4 3 2 6 6 H 1.07998 * 119.99503 * 0.02562 * 5 4 3 7 7 C 1.37871 * 120.00434 * 180.02562 * 5 4 3 8 8 N 1.31516 * 119.99826 * 359.72891 * 7 5 4 9 9 Si 1.86800 * 120.00406 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47364 * 179.72558 * 9 7 5 11 11 H 1.48508 * 109.46883 * 299.72681 * 9 7 5 12 12 H 1.48497 * 109.46870 * 59.72491 * 9 7 5 13 13 C 1.34776 * 120.00340 * 269.99855 * 3 2 1 14 14 O 1.21283 * 120.00358 * 180.02562 * 13 3 2 15 15 C 1.50700 * 119.99688 * 359.97438 * 13 3 2 16 16 N 1.46901 * 109.47159 * 179.97438 * 15 13 3 17 17 C 1.46900 * 110.99666 * 66.05040 * 16 15 13 18 18 C 1.46904 * 110.99922 * 190.00377 * 16 15 13 19 19 H 1.09001 * 110.01687 * 300.69794 * 18 16 15 20 20 C 1.54262 * 110.03454 * 62.09358 * 18 16 15 21 21 C 1.54889 * 104.19547 * 142.89455 * 20 18 16 22 22 C 1.54889 * 102.74852 * 322.05611 * 21 20 18 23 23 H 1.09003 * 110.48899 * 279.13158 * 22 21 20 24 24 S 1.81399 * 110.48765 * 156.62427 * 22 21 20 25 25 C 1.81393 * 103.00189 * 66.45279 * 24 22 21 26 26 C 1.53878 * 110.02986 * 179.31206 * 18 16 15 27 27 H 1.08995 * 109.47416 * 299.99790 * 1 2 3 28 28 H 1.09004 * 109.47270 * 59.99907 * 1 2 3 29 29 H 1.09008 * 109.47418 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47173 * 239.99641 * 2 1 3 31 31 H 1.08998 * 109.46859 * 120.00090 * 2 1 3 32 32 H 1.09004 * 109.47078 * 330.00130 * 4 3 2 33 33 H 1.08993 * 109.47364 * 209.99901 * 4 3 2 34 34 H 0.97000 * 120.00236 * 0.27947 * 8 7 5 35 35 H 1.08999 * 109.47673 * 300.00630 * 15 13 3 36 36 H 1.09002 * 109.47028 * 60.00354 * 15 13 3 37 37 H 1.08998 * 109.47089 * 60.00522 * 17 16 15 38 38 H 1.08999 * 109.46973 * 180.02562 * 17 16 15 39 39 H 1.08999 * 109.47224 * 299.99991 * 17 16 15 40 40 H 1.09001 * 110.48927 * 261.57493 * 20 18 16 41 41 H 1.09000 * 110.48532 * 24.21681 * 20 18 16 42 42 H 1.08994 * 110.75946 * 80.37293 * 21 20 18 43 43 H 1.09004 * 110.75639 * 203.74489 * 21 20 18 44 44 H 1.09001 * 109.47357 * 300.00060 * 25 24 22 45 45 H 1.08994 * 109.47522 * 60.00081 * 25 24 22 46 46 H 1.09005 * 109.47478 * 180.02562 * 25 24 22 47 47 H 1.09000 * 110.03136 * 0.02562 * 26 18 16 48 48 H 1.08997 * 110.02975 * 121.42955 * 26 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0718 1.2687 5 6 3.6857 1.8350 1.7039 6 1 4.3427 1.2308 1.0959 7 6 4.1490 2.3895 2.8780 8 7 3.3505 3.1297 3.6156 9 14 5.9134 2.0965 3.4170 10 1 6.1627 2.8015 4.7001 11 1 6.1397 0.6403 3.6002 12 1 6.8405 2.6148 2.3792 13 6 2.2429 2.0166 -1.1672 14 8 2.6476 3.1599 -1.1672 15 6 1.9924 1.3059 -2.4723 16 7 2.3099 2.2062 -3.5888 17 6 3.7464 2.5110 -3.6271 18 6 1.8576 1.6399 -4.8666 19 1 2.3391 0.6774 -5.0395 20 6 0.3244 1.4695 -4.8560 21 6 -0.1067 1.8200 -6.3018 22 6 0.8383 2.9920 -6.6656 23 1 0.4646 3.9271 -6.2484 24 16 1.0166 3.1285 -8.4657 25 6 -0.6454 3.6158 -9.0047 26 6 2.1855 2.6074 -6.0174 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.5816 1.6877 2.0284 33 1 2.0955 3.1410 1.1384 34 1 2.4343 3.2821 3.3357 35 1 2.6228 0.4187 -2.5298 36 1 0.9445 1.0114 -2.5302 37 1 4.3107 1.5869 -3.7520 38 1 3.9538 3.1795 -4.4627 39 1 4.0405 2.9932 -2.6949 40 1 0.0566 0.4403 -4.6169 41 1 -0.1310 2.1583 -4.1445 42 1 0.0537 0.9731 -6.9688 43 1 -1.1480 2.1413 -6.3272 44 1 -1.3620 2.8486 -8.7117 45 1 -0.9158 4.5628 -8.5376 46 1 -0.6573 3.7286 -10.0888 47 1 2.6806 3.4969 -5.6278 48 1 2.8253 2.1141 -6.7490 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075921570.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:45:33 Heat of formation + Delta-G solvation = -56.585574 kcal Electronic energy + Delta-G solvation = -25005.737296 eV Core-core repulsion = 21606.837933 eV Total energy + Delta-G solvation = -3398.899363 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.177 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.12087 -39.67971 -37.16374 -36.03222 -35.16925 -31.59533 -30.78961 -30.01013 -29.62432 -28.55006 -27.82791 -25.44153 -24.56263 -23.79836 -21.83181 -20.65898 -20.09083 -18.92824 -18.15042 -17.84512 -17.36884 -16.87064 -16.46845 -16.07210 -15.69734 -15.46577 -15.13370 -15.01140 -14.81918 -14.62711 -14.44539 -14.23546 -13.99119 -13.90535 -13.80376 -13.44930 -13.17749 -13.03401 -12.94927 -12.75207 -12.58929 -12.42589 -12.27589 -12.11793 -11.98088 -11.91736 -11.85722 -11.83576 -11.73410 -11.19119 -10.78565 -10.62529 -10.56810 -9.46039 -9.28366 -8.69301 -8.67587 -6.45534 0.76308 1.47603 1.56912 1.65522 1.76005 1.80403 2.15145 2.52751 2.93653 3.09343 3.40388 3.54228 3.66129 4.00019 4.08616 4.12854 4.23714 4.27978 4.33357 4.35217 4.36862 4.37249 4.44611 4.46462 4.50906 4.57162 4.59766 4.72534 4.77063 4.81757 4.88312 4.89690 4.93198 4.96943 5.00691 5.03068 5.07964 5.21245 5.32008 5.33671 5.60504 5.82466 5.88204 6.13399 6.17573 6.44390 6.73793 7.30438 7.47266 8.64841 Molecular weight = 314.18amu Principal moments of inertia in cm(-1) A = 0.023693 B = 0.002781 C = 0.002614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.491316 B =10065.600752 C =10707.950043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.100 3.900 3 N -0.603 5.603 4 C 0.251 3.749 5 C -0.614 4.614 6 H 0.044 0.956 7 C -0.033 4.033 8 N -0.932 5.932 9 Si 1.118 2.882 10 H -0.279 1.279 11 H -0.261 1.261 12 H -0.280 1.280 13 C 0.496 3.504 14 O -0.579 6.579 15 C 0.053 3.947 16 N -0.534 5.534 17 C 0.021 3.979 18 C 0.085 3.915 19 H 0.060 0.940 20 C -0.115 4.115 21 C -0.105 4.105 22 C -0.046 4.046 23 H 0.084 0.916 24 S -0.305 6.305 25 C -0.111 4.111 26 C -0.094 4.094 27 H 0.036 0.964 28 H 0.062 0.938 29 H 0.098 0.902 30 H 0.100 0.900 31 H 0.068 0.932 32 H 0.015 0.985 33 H -0.011 1.011 34 H 0.254 0.746 35 H 0.077 0.923 36 H 0.127 0.873 37 H 0.030 0.970 38 H 0.081 0.919 39 H 0.050 0.950 40 H 0.091 0.909 41 H 0.067 0.933 42 H 0.088 0.912 43 H 0.081 0.919 44 H 0.089 0.911 45 H 0.079 0.921 46 H 0.109 0.891 47 H 0.071 0.929 48 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.665 -9.042 -23.723 27.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.023 4.023 3 N -0.335 5.335 4 C 0.129 3.871 5 C -0.652 4.652 6 H 0.062 0.938 7 C -0.231 4.231 8 N -0.569 5.569 9 Si 0.939 3.061 10 H -0.205 1.205 11 H -0.185 1.185 12 H -0.206 1.206 13 C 0.285 3.715 14 O -0.459 6.459 15 C -0.078 4.078 16 N -0.259 5.259 17 C -0.127 4.127 18 C -0.024 4.024 19 H 0.077 0.923 20 C -0.154 4.154 21 C -0.144 4.144 22 C -0.175 4.175 23 H 0.102 0.898 24 S -0.077 6.077 25 C -0.280 4.280 26 C -0.133 4.133 27 H 0.055 0.945 28 H 0.081 0.919 29 H 0.116 0.884 30 H 0.118 0.882 31 H 0.087 0.913 32 H 0.033 0.967 33 H 0.007 0.993 34 H 0.064 0.936 35 H 0.095 0.905 36 H 0.145 0.855 37 H 0.049 0.951 38 H 0.099 0.901 39 H 0.069 0.931 40 H 0.109 0.891 41 H 0.086 0.914 42 H 0.107 0.893 43 H 0.100 0.900 44 H 0.108 0.892 45 H 0.098 0.902 46 H 0.128 0.872 47 H 0.090 0.910 48 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -7.737 -7.821 -23.134 25.617 hybrid contribution -1.627 -0.176 -0.065 1.637 sum -9.363 -7.996 -23.199 26.264 Atomic orbital electron populations 1.22156 0.94260 1.03677 1.01722 1.21748 0.95527 0.81207 1.03772 1.48143 1.64514 1.15096 1.05778 1.18770 0.95589 0.91209 0.81545 1.22519 0.98081 1.35238 1.09363 0.93784 1.27362 1.09398 0.92629 0.93717 1.70924 1.07713 1.37699 1.40543 0.82935 0.69558 0.77596 0.76053 1.20458 1.18526 1.20632 1.21251 0.77259 0.86707 0.86288 1.90611 1.47046 1.20514 1.87707 1.21980 1.04443 0.93825 0.87503 1.61769 1.17238 1.44325 1.02535 1.22471 0.87135 1.00209 1.02883 1.22381 0.96890 0.95967 0.87126 0.92255 1.22485 0.92985 1.02782 0.97142 1.22783 0.98647 0.96776 0.96218 1.23962 0.99798 1.02241 0.91478 0.89806 1.86965 1.20829 1.91539 1.08377 1.23406 0.94235 1.04644 1.05672 1.22053 0.95547 0.99881 0.95803 0.94490 0.91856 0.88352 0.88224 0.91323 0.96675 0.99301 0.93622 0.90527 0.85522 0.95109 0.90075 0.93140 0.89084 0.91412 0.89348 0.89989 0.89232 0.90221 0.87217 0.91034 0.90431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.77 10.24 71.98 0.74 -3.03 16 2 C 0.10 2.99 5.93 86.38 0.51 3.50 16 3 N -0.60 -25.65 2.46 -826.17 -2.03 -27.68 16 4 C 0.25 13.66 4.47 85.64 0.38 14.04 16 5 C -0.61 -36.12 9.39 25.60 0.24 -35.88 16 6 H 0.04 2.58 7.81 -2.91 -0.02 2.56 16 7 C -0.03 -1.96 5.46 84.65 0.46 -1.50 16 8 N -0.93 -58.88 13.65 21.45 0.29 -58.59 16 9 Si 1.12 51.82 29.90 68.60 2.05 53.87 16 10 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 11 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 12 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 13 C 0.50 20.80 7.40 87.66 0.65 21.45 16 14 O -0.58 -30.52 13.89 -3.04 -0.04 -30.57 16 15 C 0.05 1.49 3.86 85.56 0.33 1.82 16 16 N -0.53 -14.97 4.29 -897.34 -3.85 -18.81 16 17 C 0.02 0.64 8.90 127.69 1.14 1.77 16 18 C 0.09 1.68 2.67 45.64 0.12 1.80 16 19 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 20 C -0.11 -1.80 5.09 31.67 0.16 -1.64 16 21 C -0.10 -1.40 6.21 31.88 0.20 -1.20 16 22 C -0.05 -0.80 3.38 31.71 0.11 -0.69 16 23 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 24 S -0.30 -5.35 21.65 -56.49 -1.22 -6.58 16 25 C -0.11 -1.23 10.62 113.37 1.20 -0.02 16 26 C -0.09 -1.86 5.50 31.36 0.17 -1.68 16 27 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.06 1.35 7.22 -2.38 -0.02 1.33 16 29 H 0.10 1.62 8.14 -2.38 -0.02 1.60 16 30 H 0.10 2.27 6.44 -2.39 -0.02 2.26 16 31 H 0.07 2.23 8.07 -2.39 -0.02 2.21 16 32 H 0.02 0.83 7.94 -2.39 -0.02 0.81 16 33 H -0.01 -0.69 7.28 -2.39 -0.02 -0.71 16 34 H 0.25 16.30 7.22 -92.71 -0.67 15.63 16 35 H 0.08 1.87 7.38 -2.39 -0.02 1.85 16 36 H 0.13 2.80 5.83 -2.39 -0.01 2.78 16 37 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.08 2.18 6.01 -2.39 -0.01 2.17 16 39 H 0.05 2.02 5.88 -2.39 -0.01 2.00 16 40 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.07 1.31 7.92 -2.39 -0.02 1.29 16 42 H 0.09 1.08 8.05 -2.39 -0.02 1.06 16 43 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 44 H 0.09 0.77 8.14 -2.39 -0.02 0.76 16 45 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 46 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 47 H 0.07 1.67 6.15 -2.39 -0.01 1.66 16 48 H 0.08 1.47 7.80 -2.39 -0.02 1.45 16 Total: -1.00 -77.49 384.70 2.63 -74.86 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: 1.01 Total: 14.76 kcal Atomic # 6 Polarization: -7.68 SS G_CDS: 6.41 Total: -1.26 kcal Atomic # 7 Polarization: -99.50 SS G_CDS: -5.58 Total: -105.09 kcal Atomic # 8 Polarization: -30.52 SS G_CDS: -0.04 Total: -30.57 kcal Atomic # 14 Polarization: 51.82 SS G_CDS: 2.05 Total: 53.87 kcal Atomic # 16 Polarization: -5.35 SS G_CDS: -1.22 Total: -6.58 kcal Total: -77.49 2.63 -74.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075921570.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.273 kcal (2) G-P(sol) polarization free energy of solvation -77.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds