Wall clock time and date at job start Tue Mar 31 2020 11:15:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47233 * 2 1 4 4 C 1.53003 * 109.47189 * 119.99901 * 2 1 3 5 5 H 1.08996 * 109.62866 * 304.61040 * 4 2 1 6 6 C 1.53249 * 109.63257 * 184.01233 * 4 2 1 7 7 N 1.46468 * 109.86017 * 178.29284 * 6 4 2 8 8 C 1.46904 * 110.99923 * 197.76783 * 7 6 4 9 9 H 1.08993 * 109.46728 * 285.53378 * 8 7 6 10 10 C 1.53001 * 109.47198 * 45.53206 * 8 7 6 11 11 C 1.50700 * 109.47064 * 165.53096 * 8 7 6 12 12 O 1.21277 * 119.99961 * 359.97438 * 11 8 7 13 13 N 1.34770 * 119.99821 * 180.27174 * 11 8 7 14 14 C 1.46502 * 120.00285 * 359.73289 * 13 11 8 15 15 C 1.46504 * 119.99931 * 179.72269 * 13 11 8 16 16 C 1.50707 * 109.46755 * 90.00406 * 15 13 11 17 17 H 1.08001 * 120.00078 * 0.02562 * 16 15 13 18 18 C 1.37868 * 119.99813 * 179.97438 * 16 15 13 19 19 N 1.31517 * 120.00046 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00021 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46804 * 60.00629 * 20 18 16 22 22 H 1.48502 * 109.47312 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47425 * 300.00421 * 20 18 16 24 24 C 1.46460 * 112.55991 * 72.65781 * 7 6 4 25 25 C 1.53246 * 109.86232 * 287.34344 * 24 7 6 26 26 S 1.81898 * 109.63034 * 65.00178 * 4 2 1 27 27 H 1.08996 * 109.47217 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46988 * 299.99747 * 1 2 3 29 29 H 1.09001 * 109.46872 * 60.00118 * 1 2 3 30 30 H 1.08996 * 109.47360 * 240.00049 * 2 1 3 31 31 H 1.08994 * 109.47152 * 180.02562 * 3 2 1 32 32 H 1.09002 * 109.47032 * 300.00530 * 3 2 1 33 33 H 1.09009 * 109.47150 * 59.99904 * 3 2 1 34 34 H 1.09008 * 109.40467 * 58.17304 * 6 4 2 35 35 H 1.08996 * 109.40492 * 298.41496 * 6 4 2 36 36 H 1.09003 * 109.47219 * 292.33777 * 10 8 7 37 37 H 1.08997 * 109.47203 * 52.33786 * 10 8 7 38 38 H 1.08995 * 109.47472 * 172.33811 * 10 8 7 39 39 H 1.08994 * 109.47480 * 89.99220 * 14 13 11 40 40 H 1.08999 * 109.46973 * 210.00043 * 14 13 11 41 41 H 1.09004 * 109.46685 * 329.99460 * 14 13 11 42 42 H 1.08998 * 109.47110 * 209.99965 * 15 13 11 43 43 H 1.08994 * 109.47132 * 330.00831 * 15 13 11 44 44 H 0.97005 * 119.99614 * 179.97438 * 19 18 16 45 45 H 1.09005 * 109.40723 * 47.45955 * 24 7 6 46 46 H 1.09000 * 109.41146 * 167.30289 * 24 7 6 47 47 H 1.08995 * 109.63634 * 181.70322 * 25 24 7 48 48 H 1.09001 * 109.62985 * 302.10203 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6123 -0.2593 2.1390 6 6 3.5692 -0.6365 1.3045 7 7 4.0602 -1.2903 2.5197 8 6 5.4365 -0.8749 2.8216 9 1 6.1231 -1.3621 2.1293 10 6 5.5551 0.6433 2.6738 11 6 5.7823 -1.2706 4.2340 12 8 4.9628 -1.8419 4.9216 13 7 7.0002 -0.9843 4.7350 14 6 7.9900 -0.2936 3.9046 15 6 7.3343 -1.3636 6.1101 16 6 7.9340 -2.7462 6.1182 17 1 8.0546 -3.2879 5.1917 18 6 8.3296 -3.3190 7.3082 19 7 8.1832 -2.6590 8.4364 20 14 9.0723 -5.0330 7.3184 21 1 10.3036 -5.0438 6.4883 22 1 9.4122 -5.4169 8.7120 23 1 8.0923 -6.0005 6.7628 24 6 3.9547 -2.7497 2.4544 25 6 2.4871 -3.1719 2.5828 26 16 1.5611 -2.4747 1.1809 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 3.8740 0.4101 1.3079 35 1 3.9911 -1.1326 0.4305 36 1 5.4390 0.9164 1.6249 37 1 4.7770 1.1276 3.2636 38 1 6.5339 0.9675 3.0273 39 1 7.8846 0.7835 4.0338 40 1 8.9925 -0.5992 4.2044 41 1 7.8294 -0.5514 2.8578 42 1 8.0533 -0.6533 6.5184 43 1 6.4303 -1.3562 6.7189 44 1 8.4612 -3.0623 9.2737 45 1 4.3499 -3.0991 1.5005 46 1 4.5298 -3.1912 3.2683 47 1 2.4159 -4.2593 2.5641 48 1 2.0780 -2.7941 3.5198 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076064849.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:30 Heat of formation + Delta-G solvation = -24.752942 kcal Electronic energy + Delta-G solvation = -25592.808814 eV Core-core repulsion = 22195.289818 eV Total energy + Delta-G solvation = -3397.518996 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.177 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.88298 -37.93650 -36.11390 -34.87157 -33.03062 -32.10361 -30.24753 -28.32743 -27.56506 -27.32062 -26.09895 -24.57958 -23.15405 -22.25017 -20.73799 -20.33667 -18.46619 -17.28601 -16.60268 -16.36766 -15.93169 -15.35931 -15.02768 -14.83972 -14.59503 -14.19168 -14.00967 -13.88947 -13.70986 -13.58009 -13.01832 -12.82787 -12.61334 -12.35214 -12.25913 -12.22882 -12.06801 -11.91847 -11.60518 -11.44674 -11.35765 -11.26496 -11.13316 -11.04748 -10.92026 -10.90813 -10.57776 -10.47470 -10.16305 -9.66814 -9.57408 -8.90439 -8.45473 -8.21768 -7.66050 -7.62835 -6.06330 -4.11524 1.79240 2.56233 3.29610 3.34416 3.35525 3.41409 3.49700 4.08547 4.42484 4.52735 4.56489 4.80074 4.88795 4.95305 5.06864 5.13764 5.15821 5.19908 5.27984 5.31491 5.34933 5.39918 5.43190 5.47979 5.56242 5.63095 5.65711 5.69935 5.71141 5.77462 5.86484 5.89730 5.98234 6.03212 6.06686 6.08769 6.13187 6.26370 6.86696 7.07420 7.14121 7.43076 7.52430 7.89952 8.21055 8.40427 8.88035 9.10131 9.53802 11.01607 Molecular weight = 314.18amu Principal moments of inertia in cm(-1) A = 0.021750 B = 0.003413 C = 0.003097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.058208 B = 8202.963730 C = 9038.164704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.075 4.075 3 C -0.146 4.146 4 C -0.033 4.033 5 H 0.095 0.905 6 C 0.050 3.950 7 N -0.528 5.528 8 C 0.070 3.930 9 H 0.062 0.938 10 C -0.161 4.161 11 C 0.510 3.490 12 O -0.522 6.522 13 N -0.603 5.603 14 C 0.082 3.918 15 C 0.248 3.752 16 C -0.528 4.528 17 H 0.055 0.945 18 C 0.062 3.938 19 N -0.894 5.894 20 Si 0.897 3.103 21 H -0.277 1.277 22 H -0.286 1.286 23 H -0.276 1.276 24 C 0.058 3.942 25 C -0.066 4.066 26 S -0.283 6.283 27 H 0.064 0.936 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.077 0.923 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.059 0.941 34 H 0.097 0.903 35 H 0.043 0.957 36 H 0.062 0.938 37 H 0.070 0.930 38 H 0.082 0.918 39 H 0.048 0.952 40 H 0.073 0.927 41 H 0.056 0.944 42 H 0.031 0.969 43 H 0.044 0.956 44 H 0.264 0.736 45 H 0.039 0.961 46 H 0.103 0.897 47 H 0.104 0.896 48 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.050 8.203 -18.318 22.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.096 4.096 3 C -0.205 4.205 4 C -0.162 4.162 5 H 0.114 0.886 6 C -0.079 4.079 7 N -0.253 5.253 8 C -0.041 4.041 9 H 0.079 0.921 10 C -0.218 4.218 11 C 0.295 3.705 12 O -0.398 6.398 13 N -0.336 5.336 14 C -0.063 4.063 15 C 0.128 3.872 16 C -0.566 4.566 17 H 0.074 0.926 18 C -0.140 4.140 19 N -0.533 5.533 20 Si 0.725 3.275 21 H -0.203 1.203 22 H -0.211 1.211 23 H -0.202 1.202 24 C -0.071 4.071 25 C -0.215 4.215 26 S -0.055 6.055 27 H 0.083 0.917 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.095 0.905 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.115 0.885 35 H 0.062 0.938 36 H 0.081 0.919 37 H 0.089 0.911 38 H 0.101 0.899 39 H 0.066 0.934 40 H 0.092 0.908 41 H 0.075 0.925 42 H 0.049 0.951 43 H 0.062 0.938 44 H 0.074 0.926 45 H 0.057 0.943 46 H 0.121 0.879 47 H 0.122 0.878 48 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -10.436 7.467 -18.041 22.139 hybrid contribution 1.830 -0.737 0.323 1.999 sum -8.606 6.731 -17.718 20.815 Atomic orbital electron populations 1.21863 0.94378 1.02532 1.01720 1.20947 0.96480 0.95826 0.96307 1.21923 1.01242 0.95175 1.02183 1.23318 0.97611 0.93401 1.01868 0.88618 1.22551 0.93434 1.01014 0.90922 1.60734 1.21120 1.08101 1.35387 1.21497 0.89336 0.97237 0.96077 0.92084 1.22215 1.04373 0.93193 1.02006 1.20042 0.82371 0.80079 0.87986 1.90653 1.48091 1.40933 1.60085 1.48127 1.11990 1.57140 1.16327 1.21784 0.94194 0.95824 0.94454 1.19266 0.96935 0.95183 0.75776 1.21381 1.40847 1.01107 0.93301 0.92645 1.24929 0.95857 0.97918 0.95334 1.69923 1.47473 1.37874 0.98043 0.86572 0.79452 0.84446 0.77026 1.20276 1.21137 1.20183 1.22258 0.95934 0.87225 1.01730 1.23467 0.96622 1.02769 0.98622 1.86662 1.65683 1.09111 1.44040 0.91729 0.92470 0.92603 0.90490 0.92260 0.92268 0.92224 0.88499 0.93839 0.91934 0.91119 0.89936 0.93362 0.90823 0.92541 0.95055 0.93827 0.92632 0.94269 0.87934 0.87808 0.88616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.02 37.16 0.34 -0.92 16 2 C -0.08 -0.67 2.51 -90.62 -0.23 -0.89 16 3 C -0.15 -1.06 8.74 37.16 0.32 -0.74 16 4 C -0.03 -0.37 2.35 -26.60 -0.06 -0.43 16 5 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 6 C 0.05 0.57 3.99 -3.93 -0.02 0.55 16 7 N -0.53 -7.72 3.99 -228.45 -0.91 -8.63 16 8 C 0.07 1.04 1.75 -68.86 -0.12 0.92 16 9 H 0.06 0.85 7.36 -51.93 -0.38 0.47 16 10 C -0.16 -1.86 7.83 37.16 0.29 -1.57 16 11 C 0.51 10.35 6.61 -10.99 -0.07 10.28 16 12 O -0.52 -12.83 14.30 5.56 0.08 -12.75 16 13 N -0.60 -12.45 2.86 -182.95 -0.52 -12.97 16 14 C 0.08 1.23 8.81 59.85 0.53 1.76 16 15 C 0.25 6.40 5.16 -5.19 -0.03 6.37 16 16 C -0.53 -14.81 9.39 -34.44 -0.32 -15.13 16 17 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 18 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 19 N -0.89 -26.49 13.29 55.43 0.74 -25.75 16 20 Si 0.90 21.73 29.54 -169.99 -5.02 16.71 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 22 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 23 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 24 C 0.06 0.87 4.95 -3.94 -0.02 0.86 16 25 C -0.07 -0.93 6.69 37.28 0.25 -0.68 16 26 S -0.28 -3.60 20.60 -107.50 -2.21 -5.82 16 27 H 0.06 0.62 7.15 -51.93 -0.37 0.25 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.06 0.41 6.33 -51.93 -0.33 0.08 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.06 0.44 8.14 -51.92 -0.42 0.02 16 34 H 0.10 0.96 3.40 -51.92 -0.18 0.78 16 35 H 0.04 0.50 7.91 -51.93 -0.41 0.09 16 36 H 0.06 0.56 6.48 -51.93 -0.34 0.22 16 37 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.08 0.91 4.41 -51.93 -0.23 0.68 16 39 H 0.05 0.62 6.81 -51.93 -0.35 0.26 16 40 H 0.07 1.16 8.07 -51.93 -0.42 0.74 16 41 H 0.06 0.70 6.09 -51.93 -0.32 0.39 16 42 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 43 H 0.04 1.28 7.42 -51.93 -0.39 0.90 16 44 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 45 H 0.04 0.56 7.92 -51.93 -0.41 0.14 16 46 H 0.10 1.88 6.05 -51.93 -0.31 1.57 16 47 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 48 H 0.10 1.48 8.14 -51.93 -0.42 1.06 16 LS Contribution 371.99 15.07 5.61 5.61 Total: -1.00 -32.06 371.99 -9.69 -41.75 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: -8.20 Total: -0.20 kcal Atomic # 6 Polarization: 1.29 SS G_CDS: 0.76 Total: 2.05 kcal Atomic # 7 Polarization: -46.66 SS G_CDS: -0.70 Total: -47.35 kcal Atomic # 8 Polarization: -12.83 SS G_CDS: 0.08 Total: -12.75 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Atomic # 16 Polarization: -3.60 SS G_CDS: -2.21 Total: -5.82 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.06 -9.69 -41.75 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076064849.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.995 kcal (2) G-P(sol) polarization free energy of solvation -32.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds