Wall clock time and date at job start Tue Mar 31 2020 11:00:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47130 * 2 1 4 4 C 1.50701 * 109.46748 * 119.99833 * 2 1 3 5 5 H 1.07999 * 120.00314 * 119.99875 * 4 2 1 6 6 C 1.37886 * 120.00211 * 299.99951 * 4 2 1 7 7 N 1.31512 * 120.00060 * 180.02562 * 6 4 2 8 8 Si 1.86802 * 119.99364 * 0.02562 * 6 4 2 9 9 H 1.48497 * 109.47076 * 90.00373 * 8 6 4 10 10 H 1.48505 * 109.46777 * 209.99946 * 8 6 4 11 11 H 1.48497 * 109.47562 * 329.99634 * 8 6 4 12 12 N 1.46500 * 109.47339 * 239.99547 * 2 1 3 13 13 C 1.46500 * 119.99996 * 300.00391 * 12 2 1 14 14 C 1.34777 * 119.99832 * 119.99991 * 12 2 1 15 15 O 1.21280 * 119.99863 * 0.02562 * 14 12 2 16 16 C 1.50700 * 119.99696 * 180.02562 * 14 12 2 17 17 C 1.52998 * 109.46780 * 180.02562 * 16 14 12 18 18 C 1.50698 * 109.47133 * 180.02562 * 17 16 14 19 19 C 1.34244 * 126.50201 * 264.97683 * 18 17 16 20 20 N 1.36833 * 109.93092 * 180.02562 * 19 18 17 21 21 C 1.46499 * 125.06296 * 180.02562 * 20 19 18 22 22 C 1.37692 * 109.87406 * 0.26052 * 20 19 18 23 23 C 1.39121 * 133.50130 * 180.46554 * 22 20 19 24 24 C 1.37756 * 119.77586 * 179.54775 * 23 22 20 25 25 C 1.38822 * 120.66581 * 359.75994 * 24 23 22 26 26 C 1.36632 * 120.53342 * 359.97438 * 25 24 23 27 27 C 1.39629 * 119.76073 * 0.02562 * 26 25 24 28 28 H 1.08996 * 109.47130 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47627 * 300.00701 * 1 2 3 30 30 H 1.09003 * 109.46779 * 60.00561 * 1 2 3 31 31 H 0.97003 * 119.99170 * 179.97438 * 7 6 4 32 32 H 1.08999 * 109.46792 * 270.00023 * 13 12 2 33 33 H 1.09001 * 109.47273 * 29.99837 * 13 12 2 34 34 H 1.08996 * 109.46986 * 149.99748 * 13 12 2 35 35 H 1.08995 * 109.47405 * 60.00368 * 16 14 12 36 36 H 1.09000 * 109.46828 * 299.99859 * 16 14 12 37 37 H 1.09003 * 109.47420 * 60.00405 * 17 16 14 38 38 H 1.09001 * 109.47525 * 299.99941 * 17 16 14 39 39 H 1.08003 * 125.03378 * 359.97438 * 19 18 17 40 40 H 1.09002 * 109.47391 * 90.01941 * 21 20 19 41 41 H 1.09001 * 109.46813 * 330.01997 * 21 20 19 42 42 H 1.09004 * 109.47041 * 210.02124 * 21 20 19 43 43 H 1.07994 * 120.11545 * 359.27993 * 23 22 20 44 44 H 1.08002 * 119.66262 * 179.73573 * 24 23 22 45 45 H 1.08007 * 119.73805 * 179.97438 * 25 24 23 46 46 H 1.07990 * 120.12010 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 1.2305 5 1 2.6531 -1.5885 1.1316 6 6 1.6991 -0.2393 2.4829 7 7 2.1378 -0.8590 3.5567 8 14 0.6246 1.2791 2.6540 9 1 -0.8029 0.8727 2.6997 10 1 0.9757 1.9953 3.9067 11 1 0.8470 2.1766 1.4920 12 7 2.0184 -0.6907 -1.1961 13 6 1.6644 -2.0933 -1.4279 14 6 2.7932 -0.0357 -2.0833 15 8 3.0865 1.1253 -1.8911 16 6 3.2951 -0.7461 -3.3139 17 6 4.1457 0.2153 -4.1464 18 6 4.6472 -0.4947 -5.3774 19 6 5.8350 -1.1037 -5.5198 20 7 5.9381 -1.6370 -6.7757 21 6 7.0972 -2.3746 -7.2843 22 6 4.7923 -1.3726 -7.4921 23 6 4.3765 -1.6840 -8.7827 24 6 3.1357 -1.2747 -9.2191 25 6 2.2917 -0.5576 -8.3819 26 6 2.6777 -0.2457 -7.1089 27 6 3.9312 -0.6506 -6.6458 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.9037 -0.5272 4.4376 32 1 2.4157 -2.7377 -0.9714 33 1 0.6904 -2.3003 -0.9845 34 1 1.6238 -2.2853 -2.5000 35 1 2.4472 -1.0882 -3.9072 36 1 3.9005 -1.6027 -3.0175 37 1 4.9938 0.5571 -3.5530 38 1 3.5408 1.0722 -4.4428 39 1 6.5968 -1.1631 -4.7566 40 1 6.9742 -3.4365 -7.0712 41 1 8.0021 -2.0090 -6.7988 42 1 7.1778 -2.2271 -8.3613 43 1 5.0259 -2.2410 -9.4416 44 1 2.8164 -1.5137 -10.2227 45 1 1.3222 -0.2438 -8.7397 46 1 2.0157 0.3120 -6.4632 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000151781844.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:20 Heat of formation + Delta-G solvation = 29.105323 kcal Electronic energy + Delta-G solvation = -25584.152360 eV Core-core repulsion = 22053.524882 eV Total energy + Delta-G solvation = -3530.627478 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.45440 -39.17034 -37.17996 -35.60785 -34.41448 -32.75989 -31.53128 -30.45968 -30.22313 -28.84145 -26.61742 -26.14500 -25.07591 -23.90356 -22.72927 -21.52771 -20.85777 -19.42330 -18.17151 -17.11041 -16.75307 -16.63455 -15.95496 -15.64159 -15.51802 -15.41564 -15.15130 -14.36619 -14.09491 -13.99100 -13.48097 -13.22961 -13.03640 -12.94864 -12.84226 -12.57907 -12.30203 -12.20737 -12.08337 -11.97306 -11.67697 -11.66162 -11.47290 -11.26797 -11.10508 -10.95430 -10.64452 -10.58042 -10.10308 -9.62405 -9.61918 -9.29874 -8.92741 -8.60954 -8.27753 -7.65528 -7.62693 -6.12152 -4.12240 1.02946 1.52606 2.57486 2.65249 3.25527 3.38114 3.38974 3.42368 3.80256 3.94613 4.37849 4.46173 4.55284 4.70108 4.83908 4.87247 5.00086 5.07756 5.12715 5.21525 5.26472 5.36359 5.42377 5.48522 5.57941 5.65509 5.75358 5.84737 5.90685 5.93619 6.05598 6.25069 6.25605 6.30792 6.37000 6.37690 6.44049 6.53541 6.55662 6.68000 6.75349 6.88459 7.11858 7.17662 7.18689 7.41382 7.67512 8.25383 8.52941 8.88643 9.00099 9.49545 11.00749 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.023663 B = 0.002762 C = 0.002623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.022849 B =10135.431092 C =10673.633241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.228 3.772 3 H 0.062 0.938 4 C -0.526 4.526 5 H 0.078 0.922 6 C 0.074 3.926 7 N -0.897 5.897 8 Si 0.883 3.117 9 H -0.277 1.277 10 H -0.295 1.295 11 H -0.263 1.263 12 N -0.590 5.590 13 C 0.087 3.913 14 C 0.504 3.496 15 O -0.556 6.556 16 C -0.130 4.130 17 C -0.028 4.028 18 C -0.159 4.159 19 C 0.048 3.952 20 N -0.490 5.490 21 C 0.081 3.919 22 C 0.096 3.904 23 C -0.133 4.133 24 C -0.101 4.101 25 C -0.152 4.152 26 C -0.065 4.065 27 C -0.101 4.101 28 H 0.055 0.945 29 H 0.049 0.951 30 H 0.033 0.967 31 H 0.265 0.735 32 H 0.052 0.948 33 H 0.072 0.928 34 H 0.055 0.945 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.168 0.832 40 H 0.068 0.932 41 H 0.082 0.918 42 H 0.077 0.923 43 H 0.115 0.885 44 H 0.121 0.879 45 H 0.120 0.880 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.167 -4.506 -25.243 26.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.126 3.874 3 H 0.080 0.920 4 C -0.564 4.564 5 H 0.096 0.904 6 C -0.128 4.128 7 N -0.535 5.535 8 Si 0.713 3.287 9 H -0.204 1.204 10 H -0.222 1.222 11 H -0.188 1.188 12 N -0.321 5.321 13 C -0.056 4.056 14 C 0.292 3.708 15 O -0.435 6.435 16 C -0.170 4.170 17 C -0.066 4.066 18 C -0.165 4.165 19 C -0.075 4.075 20 N -0.174 5.174 21 C -0.061 4.061 22 C -0.010 4.010 23 C -0.154 4.154 24 C -0.121 4.121 25 C -0.171 4.171 26 C -0.084 4.084 27 C -0.106 4.106 28 H 0.074 0.926 29 H 0.068 0.932 30 H 0.052 0.948 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.090 0.910 34 H 0.074 0.926 35 H 0.105 0.895 36 H 0.105 0.895 37 H 0.095 0.905 38 H 0.094 0.906 39 H 0.186 0.814 40 H 0.086 0.914 41 H 0.101 0.899 42 H 0.096 0.904 43 H 0.133 0.867 44 H 0.139 0.861 45 H 0.138 0.862 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 5.626 -4.096 -25.006 25.957 hybrid contribution -0.516 0.396 0.317 0.724 sum 5.109 -3.700 -24.689 25.483 Atomic orbital electron populations 1.22458 0.99254 1.00997 0.99216 1.19264 0.89870 0.95237 0.83014 0.91991 1.21184 1.32538 1.14142 0.88539 0.90419 1.24875 0.95711 0.96590 0.95638 1.69880 1.45366 1.40260 0.97948 0.86910 0.80405 0.83888 0.77455 1.20438 1.22196 1.18755 1.47885 1.49433 1.11814 1.22937 1.21583 1.01686 0.82812 0.99548 1.20548 0.78729 0.87081 0.84451 1.90633 1.58374 1.17339 1.77187 1.21652 1.00814 0.99651 0.94895 1.19640 0.99648 0.96391 0.90959 1.20368 0.94615 1.06408 0.95151 1.21665 0.99373 0.99690 0.86822 1.43744 1.14174 1.48103 1.11383 1.21899 0.87074 0.96513 1.00619 1.18267 0.87481 1.01197 0.94056 1.19953 0.97638 1.04800 0.92999 1.20765 0.93323 0.98518 0.99445 1.20614 1.00252 1.01917 0.94314 1.20343 0.94243 0.98236 0.95571 1.19138 0.94967 1.02537 0.93937 0.92580 0.93229 0.94804 0.92489 0.92929 0.90975 0.92599 0.89545 0.89472 0.90466 0.90556 0.81435 0.91390 0.89947 0.90398 0.86730 0.86060 0.86184 0.85964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.53 8.65 37.16 0.32 -3.21 16 2 C 0.23 5.59 2.23 -69.08 -0.15 5.44 16 3 H 0.06 1.69 5.96 -51.93 -0.31 1.38 16 4 C -0.53 -14.73 8.95 -34.44 -0.31 -15.04 16 5 H 0.08 2.34 7.89 -52.49 -0.41 1.92 16 6 C 0.07 2.14 5.45 -17.82 -0.10 2.05 16 7 N -0.90 -27.26 13.96 55.43 0.77 -26.49 16 8 Si 0.88 22.13 24.37 -169.99 -4.14 17.99 16 9 H -0.28 -6.64 6.87 56.52 0.39 -6.25 16 10 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 11 H -0.26 -6.52 6.53 56.52 0.37 -6.15 16 12 N -0.59 -12.27 2.75 -175.27 -0.48 -12.75 16 13 C 0.09 1.45 9.48 59.85 0.57 2.02 16 14 C 0.50 10.05 7.67 -10.99 -0.08 9.96 16 15 O -0.56 -13.12 15.31 5.56 0.09 -13.04 16 16 C -0.13 -1.90 4.23 -27.88 -0.12 -2.02 16 17 C -0.03 -0.39 5.03 -27.89 -0.14 -0.53 16 18 C -0.16 -2.01 5.57 -102.71 -0.57 -2.58 16 19 C 0.05 0.53 11.21 -16.73 -0.19 0.34 16 20 N -0.49 -4.96 3.18 -121.80 -0.39 -5.34 16 21 C 0.08 0.48 11.03 59.85 0.66 1.14 16 22 C 0.10 1.11 6.81 -83.98 -0.57 0.54 16 23 C -0.13 -1.31 9.97 -39.43 -0.39 -1.71 16 24 C -0.10 -0.94 10.01 -39.54 -0.40 -1.34 16 25 C -0.15 -1.53 9.97 -39.95 -0.40 -1.93 16 26 C -0.07 -0.77 10.05 -39.64 -0.40 -1.17 16 27 C -0.10 -1.30 6.35 -105.13 -0.67 -1.96 16 28 H 0.06 1.14 6.66 -51.93 -0.35 0.79 16 29 H 0.05 1.13 3.27 -51.93 -0.17 0.96 16 30 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 32 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.07 1.19 6.43 -51.93 -0.33 0.86 16 34 H 0.06 0.73 6.44 -51.93 -0.33 0.39 16 35 H 0.09 1.14 7.40 -51.93 -0.38 0.75 16 36 H 0.09 1.18 8.11 -51.93 -0.42 0.75 16 37 H 0.08 1.11 8.10 -51.93 -0.42 0.69 16 38 H 0.08 1.13 8.10 -51.93 -0.42 0.71 16 39 H 0.17 1.41 8.06 -52.48 -0.42 0.99 16 40 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.08 0.38 8.10 -51.93 -0.42 -0.04 16 43 H 0.11 0.86 8.06 -52.49 -0.42 0.44 16 44 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 45 H 0.12 0.96 8.06 -52.48 -0.42 0.54 16 46 H 0.12 1.35 8.06 -52.49 -0.42 0.92 16 LS Contribution 370.36 15.07 5.58 5.58 Total: -1.00 -34.69 370.36 -8.47 -43.16 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: -6.96 Total: 0.87 kcal Atomic # 6 Polarization: -7.05 SS G_CDS: -2.94 Total: -9.99 kcal Atomic # 7 Polarization: -44.48 SS G_CDS: -0.10 Total: -44.58 kcal Atomic # 8 Polarization: -13.12 SS G_CDS: 0.09 Total: -13.04 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -4.14 Total: 17.99 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -34.69 -8.47 -43.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000151781844.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.268 kcal (2) G-P(sol) polarization free energy of solvation -34.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds