Wall clock time and date at job start Tue Mar 31 2020 11:00:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47130 * 2 1 4 4 C 1.50701 * 109.46748 * 119.99833 * 2 1 3 5 5 H 1.07999 * 120.00314 * 119.99875 * 4 2 1 6 6 C 1.37886 * 120.00211 * 299.99951 * 4 2 1 7 7 N 1.31512 * 120.00060 * 180.02562 * 6 4 2 8 8 Si 1.86802 * 119.99364 * 0.02562 * 6 4 2 9 9 H 1.48497 * 109.47076 * 90.00373 * 8 6 4 10 10 H 1.48505 * 109.46777 * 209.99946 * 8 6 4 11 11 H 1.48497 * 109.47562 * 329.99634 * 8 6 4 12 12 N 1.46500 * 109.47339 * 239.99547 * 2 1 3 13 13 C 1.46500 * 119.99996 * 300.00391 * 12 2 1 14 14 C 1.34777 * 119.99832 * 119.99991 * 12 2 1 15 15 O 1.21280 * 119.99863 * 0.02562 * 14 12 2 16 16 C 1.50700 * 119.99696 * 180.02562 * 14 12 2 17 17 C 1.52998 * 109.46780 * 180.02562 * 16 14 12 18 18 C 1.50698 * 109.47133 * 180.02562 * 17 16 14 19 19 C 1.34244 * 126.50201 * 264.97683 * 18 17 16 20 20 N 1.36833 * 109.93092 * 180.02562 * 19 18 17 21 21 C 1.46499 * 125.06296 * 180.02562 * 20 19 18 22 22 C 1.37692 * 109.87406 * 0.26052 * 20 19 18 23 23 C 1.39121 * 133.50130 * 180.46554 * 22 20 19 24 24 C 1.37756 * 119.77586 * 179.54775 * 23 22 20 25 25 C 1.38822 * 120.66581 * 359.75994 * 24 23 22 26 26 C 1.36632 * 120.53342 * 359.97438 * 25 24 23 27 27 C 1.39629 * 119.76073 * 0.02562 * 26 25 24 28 28 H 1.08996 * 109.47130 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47627 * 300.00701 * 1 2 3 30 30 H 1.09003 * 109.46779 * 60.00561 * 1 2 3 31 31 H 0.97003 * 119.99170 * 179.97438 * 7 6 4 32 32 H 1.08999 * 109.46792 * 270.00023 * 13 12 2 33 33 H 1.09001 * 109.47273 * 29.99837 * 13 12 2 34 34 H 1.08996 * 109.46986 * 149.99748 * 13 12 2 35 35 H 1.08995 * 109.47405 * 60.00368 * 16 14 12 36 36 H 1.09000 * 109.46828 * 299.99859 * 16 14 12 37 37 H 1.09003 * 109.47420 * 60.00405 * 17 16 14 38 38 H 1.09001 * 109.47525 * 299.99941 * 17 16 14 39 39 H 1.08003 * 125.03378 * 359.97438 * 19 18 17 40 40 H 1.09002 * 109.47391 * 90.01941 * 21 20 19 41 41 H 1.09001 * 109.46813 * 330.01997 * 21 20 19 42 42 H 1.09004 * 109.47041 * 210.02124 * 21 20 19 43 43 H 1.07994 * 120.11545 * 359.27993 * 23 22 20 44 44 H 1.08002 * 119.66262 * 179.73573 * 24 23 22 45 45 H 1.08007 * 119.73805 * 179.97438 * 25 24 23 46 46 H 1.07990 * 120.12010 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 1.2305 5 1 2.6531 -1.5885 1.1316 6 6 1.6991 -0.2393 2.4829 7 7 2.1378 -0.8590 3.5567 8 14 0.6246 1.2791 2.6540 9 1 -0.8029 0.8727 2.6997 10 1 0.9757 1.9953 3.9067 11 1 0.8470 2.1766 1.4920 12 7 2.0184 -0.6907 -1.1961 13 6 1.6644 -2.0933 -1.4279 14 6 2.7932 -0.0357 -2.0833 15 8 3.0865 1.1253 -1.8911 16 6 3.2951 -0.7461 -3.3139 17 6 4.1457 0.2153 -4.1464 18 6 4.6472 -0.4947 -5.3774 19 6 5.8350 -1.1037 -5.5198 20 7 5.9381 -1.6370 -6.7757 21 6 7.0972 -2.3746 -7.2843 22 6 4.7923 -1.3726 -7.4921 23 6 4.3765 -1.6840 -8.7827 24 6 3.1357 -1.2747 -9.2191 25 6 2.2917 -0.5576 -8.3819 26 6 2.6777 -0.2457 -7.1089 27 6 3.9312 -0.6506 -6.6458 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.9037 -0.5272 4.4376 32 1 2.4157 -2.7377 -0.9714 33 1 0.6904 -2.3003 -0.9845 34 1 1.6238 -2.2853 -2.5000 35 1 2.4472 -1.0882 -3.9072 36 1 3.9005 -1.6027 -3.0175 37 1 4.9938 0.5571 -3.5530 38 1 3.5408 1.0722 -4.4428 39 1 6.5968 -1.1631 -4.7566 40 1 6.9742 -3.4365 -7.0712 41 1 8.0021 -2.0090 -6.7988 42 1 7.1778 -2.2271 -8.3613 43 1 5.0259 -2.2410 -9.4416 44 1 2.8164 -1.5137 -10.2227 45 1 1.3222 -0.2438 -8.7397 46 1 2.0157 0.3120 -6.4632 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000151781844.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:19 Heat of formation + Delta-G solvation = 8.933101 kcal Electronic energy + Delta-G solvation = -25585.027094 eV Core-core repulsion = 22053.524882 eV Total energy + Delta-G solvation = -3531.502211 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.22931 -40.78453 -37.91435 -37.32971 -35.47122 -34.73612 -32.84120 -31.75748 -31.15910 -29.66144 -27.70625 -27.43163 -27.08666 -25.01572 -23.49422 -22.69758 -22.13408 -20.30243 -19.79133 -18.92355 -18.02331 -17.45299 -17.40862 -17.13733 -16.68247 -16.24372 -16.22496 -16.00958 -15.05023 -14.92311 -14.76264 -14.62512 -14.50426 -14.11813 -13.85760 -13.75669 -13.72252 -13.40765 -13.30183 -13.26264 -12.99308 -12.90842 -12.80375 -12.52779 -12.50274 -12.05311 -12.02833 -11.89404 -11.57944 -11.55600 -11.34202 -10.80091 -10.65034 -10.36761 -9.36698 -9.05838 -8.42360 -8.35470 -6.39682 0.25340 0.75181 1.25586 1.35211 1.44287 1.72334 1.80977 1.97957 2.27558 2.38132 2.99907 3.03647 3.70644 3.83850 3.86934 4.01487 4.17810 4.25173 4.27442 4.35332 4.39082 4.45489 4.48413 4.55867 4.58962 4.61988 4.65167 4.71253 4.73976 4.76771 4.82811 4.94757 4.96205 4.98570 5.08845 5.10899 5.24676 5.34151 5.36855 5.50412 5.63840 5.74856 5.77313 5.88472 5.93232 6.21262 6.34027 6.47815 6.62318 6.78285 7.22431 7.42329 8.80718 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.023663 B = 0.002762 C = 0.002623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.022849 B =10135.431092 C =10673.633241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.230 3.770 3 H 0.030 0.970 4 C -0.526 4.526 5 H 0.044 0.956 6 C 0.022 3.978 7 N -0.940 5.940 8 Si 0.942 3.058 9 H -0.253 1.253 10 H -0.295 1.295 11 H -0.263 1.263 12 N -0.599 5.599 13 C 0.085 3.915 14 C 0.496 3.504 15 O -0.600 6.600 16 C -0.112 4.112 17 C -0.017 4.017 18 C -0.187 4.187 19 C 0.056 3.944 20 N -0.490 5.490 21 C 0.073 3.927 22 C 0.077 3.923 23 C -0.135 4.135 24 C -0.104 4.104 25 C -0.153 4.153 26 C -0.090 4.090 27 C -0.127 4.127 28 H 0.071 0.929 29 H 0.041 0.959 30 H 0.056 0.944 31 H 0.268 0.732 32 H 0.046 0.954 33 H 0.073 0.927 34 H 0.098 0.902 35 H 0.107 0.893 36 H 0.104 0.896 37 H 0.064 0.936 38 H 0.058 0.942 39 H 0.189 0.811 40 H 0.078 0.922 41 H 0.098 0.902 42 H 0.091 0.909 43 H 0.139 0.861 44 H 0.150 0.850 45 H 0.138 0.862 46 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.712 -5.498 -28.032 28.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.126 3.874 3 H 0.048 0.952 4 C -0.564 4.564 5 H 0.062 0.938 6 C -0.176 4.176 7 N -0.580 5.580 8 Si 0.769 3.231 9 H -0.178 1.178 10 H -0.223 1.223 11 H -0.188 1.188 12 N -0.329 5.329 13 C -0.058 4.058 14 C 0.286 3.714 15 O -0.483 6.483 16 C -0.152 4.152 17 C -0.055 4.055 18 C -0.194 4.194 19 C -0.069 4.069 20 N -0.172 5.172 21 C -0.067 4.067 22 C -0.029 4.029 23 C -0.155 4.155 24 C -0.123 4.123 25 C -0.172 4.172 26 C -0.109 4.109 27 C -0.131 4.131 28 H 0.090 0.910 29 H 0.060 0.940 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.065 0.935 33 H 0.092 0.908 34 H 0.116 0.884 35 H 0.126 0.874 36 H 0.122 0.878 37 H 0.083 0.917 38 H 0.077 0.923 39 H 0.206 0.794 40 H 0.097 0.903 41 H 0.117 0.883 42 H 0.109 0.891 43 H 0.157 0.843 44 H 0.168 0.832 45 H 0.156 0.844 46 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 5.168 -5.134 -27.839 28.776 hybrid contribution -0.262 0.636 1.099 1.296 sum 4.907 -4.498 -26.740 27.556 Atomic orbital electron populations 1.22317 0.96711 1.02279 0.99893 1.18944 0.91778 0.93425 0.83253 0.95207 1.21391 1.31670 1.13066 0.90298 0.93754 1.25655 0.97182 0.99493 0.95316 1.70005 1.47205 1.42194 0.98589 0.85969 0.79911 0.80179 0.77080 1.17826 1.22281 1.18766 1.47989 1.49642 1.13396 1.21887 1.21801 1.01425 0.80198 1.02334 1.21498 0.77662 0.86753 0.85440 1.90605 1.59771 1.19522 1.78353 1.21607 1.01688 0.99519 0.92373 1.19422 0.98743 0.95868 0.91488 1.20205 0.95960 1.08408 0.94829 1.21994 0.99036 0.98313 0.87570 1.44013 1.14724 1.47609 1.10881 1.22195 0.86196 0.96721 1.01594 1.18569 0.87965 1.01614 0.94768 1.20310 0.98161 1.04405 0.92617 1.21149 0.92972 0.97678 1.00546 1.20916 1.01180 1.01349 0.93759 1.20480 0.94417 0.99384 0.96590 1.19380 0.95790 1.03557 0.94392 0.91028 0.94022 0.92541 0.92259 0.93516 0.90797 0.88388 0.87445 0.87788 0.91686 0.92317 0.79366 0.90323 0.88310 0.89070 0.84284 0.83227 0.84389 0.86424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.51 8.65 71.98 0.62 -5.88 16 2 C 0.23 11.32 2.23 44.25 0.10 11.42 16 3 H 0.03 1.67 5.96 -2.39 -0.01 1.66 16 4 C -0.53 -30.15 8.95 25.60 0.23 -29.92 16 5 H 0.04 2.77 7.89 -2.91 -0.02 2.74 16 6 C 0.02 1.29 5.45 84.66 0.46 1.76 16 7 N -0.94 -58.45 13.96 21.45 0.30 -58.15 16 8 Si 0.94 45.89 24.37 68.60 1.67 47.56 16 9 H -0.25 -11.27 6.87 99.48 0.68 -10.59 16 10 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 11 H -0.26 -12.73 6.53 99.48 0.65 -12.08 16 12 N -0.60 -24.75 2.75 -826.81 -2.28 -27.03 16 13 C 0.08 2.69 9.48 127.77 1.21 3.90 16 14 C 0.50 19.87 7.67 87.66 0.67 20.54 16 15 O -0.60 -29.21 15.31 -3.03 -0.05 -29.25 16 16 C -0.11 -3.18 4.23 29.85 0.13 -3.05 16 17 C -0.02 -0.47 5.03 29.85 0.15 -0.32 16 18 C -0.19 -4.64 5.57 -18.63 -0.10 -4.74 16 19 C 0.06 1.14 11.21 83.00 0.93 2.07 16 20 N -0.49 -8.86 3.18 -539.25 -1.71 -10.58 16 21 C 0.07 0.66 11.03 127.77 1.41 2.07 16 22 C 0.08 1.66 6.81 39.03 0.27 1.92 16 23 C -0.13 -2.30 9.97 22.37 0.22 -2.08 16 24 C -0.10 -1.67 10.01 22.30 0.22 -1.45 16 25 C -0.15 -2.84 9.97 22.03 0.22 -2.62 16 26 C -0.09 -2.08 10.05 22.23 0.22 -1.86 16 27 C -0.13 -3.16 6.35 -20.20 -0.13 -3.29 16 28 H 0.07 2.76 6.66 -2.39 -0.02 2.75 16 29 H 0.04 1.81 3.27 -2.39 -0.01 1.81 16 30 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 31 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 32 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.07 2.31 6.43 -2.39 -0.02 2.30 16 34 H 0.10 2.27 6.44 -2.39 -0.02 2.25 16 35 H 0.11 2.62 7.40 -2.39 -0.02 2.60 16 36 H 0.10 2.63 8.11 -2.39 -0.02 2.61 16 37 H 0.06 1.94 8.10 -2.39 -0.02 1.92 16 38 H 0.06 1.82 8.10 -2.39 -0.02 1.80 16 39 H 0.19 2.81 8.06 -2.91 -0.02 2.79 16 40 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 41 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 42 H 0.09 0.59 8.10 -2.38 -0.02 0.57 16 43 H 0.14 1.60 8.06 -2.91 -0.02 1.58 16 44 H 0.15 1.47 8.06 -2.91 -0.02 1.45 16 45 H 0.14 1.94 8.06 -2.91 -0.02 1.91 16 46 H 0.12 2.65 8.06 -2.92 -0.02 2.63 16 Total: -1.00 -78.00 370.36 5.66 -72.34 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: 0.89 Total: 16.64 kcal Atomic # 6 Polarization: -18.37 SS G_CDS: 6.83 Total: -11.54 kcal Atomic # 7 Polarization: -92.06 SS G_CDS: -3.69 Total: -95.75 kcal Atomic # 8 Polarization: -29.21 SS G_CDS: -0.05 Total: -29.25 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 1.67 Total: 47.56 kcal Total: -78.00 5.66 -72.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000151781844.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.273 kcal (2) G-P(sol) polarization free energy of solvation -77.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.340 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds