Wall clock time and date at job start Tue Mar 31 2020 11:00:19
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 H 1.08996 * 109.47130 * 2 1
4 4 C 1.50701 * 109.46748 * 119.99833 * 2 1 3
5 5 H 1.07999 * 120.00314 * 119.99875 * 4 2 1
6 6 C 1.37886 * 120.00211 * 299.99951 * 4 2 1
7 7 N 1.31512 * 120.00060 * 180.02562 * 6 4 2
8 8 Si 1.86802 * 119.99364 * 0.02562 * 6 4 2
9 9 H 1.48497 * 109.47076 * 90.00373 * 8 6 4
10 10 H 1.48505 * 109.46777 * 209.99946 * 8 6 4
11 11 H 1.48497 * 109.47562 * 329.99634 * 8 6 4
12 12 N 1.46500 * 109.47339 * 239.99547 * 2 1 3
13 13 C 1.46500 * 119.99996 * 300.00391 * 12 2 1
14 14 C 1.34777 * 119.99832 * 119.99991 * 12 2 1
15 15 O 1.21280 * 119.99863 * 0.02562 * 14 12 2
16 16 C 1.50700 * 119.99696 * 180.02562 * 14 12 2
17 17 C 1.52998 * 109.46780 * 180.02562 * 16 14 12
18 18 C 1.50698 * 109.47133 * 180.02562 * 17 16 14
19 19 C 1.34244 * 126.50201 * 264.97683 * 18 17 16
20 20 N 1.36833 * 109.93092 * 180.02562 * 19 18 17
21 21 C 1.46499 * 125.06296 * 180.02562 * 20 19 18
22 22 C 1.37692 * 109.87406 * 0.26052 * 20 19 18
23 23 C 1.39121 * 133.50130 * 180.46554 * 22 20 19
24 24 C 1.37756 * 119.77586 * 179.54775 * 23 22 20
25 25 C 1.38822 * 120.66581 * 359.75994 * 24 23 22
26 26 C 1.36632 * 120.53342 * 359.97438 * 25 24 23
27 27 C 1.39629 * 119.76073 * 0.02562 * 26 25 24
28 28 H 1.08996 * 109.47130 * 180.02562 * 1 2 3
29 29 H 1.09004 * 109.47627 * 300.00701 * 1 2 3
30 30 H 1.09003 * 109.46779 * 60.00561 * 1 2 3
31 31 H 0.97003 * 119.99170 * 179.97438 * 7 6 4
32 32 H 1.08999 * 109.46792 * 270.00023 * 13 12 2
33 33 H 1.09001 * 109.47273 * 29.99837 * 13 12 2
34 34 H 1.08996 * 109.46986 * 149.99748 * 13 12 2
35 35 H 1.08995 * 109.47405 * 60.00368 * 16 14 12
36 36 H 1.09000 * 109.46828 * 299.99859 * 16 14 12
37 37 H 1.09003 * 109.47420 * 60.00405 * 17 16 14
38 38 H 1.09001 * 109.47525 * 299.99941 * 17 16 14
39 39 H 1.08003 * 125.03378 * 359.97438 * 19 18 17
40 40 H 1.09002 * 109.47391 * 90.01941 * 21 20 19
41 41 H 1.09001 * 109.46813 * 330.01997 * 21 20 19
42 42 H 1.09004 * 109.47041 * 210.02124 * 21 20 19
43 43 H 1.07994 * 120.11545 * 359.27993 * 23 22 20
44 44 H 1.08002 * 119.66262 * 179.73573 * 24 23 22
45 45 H 1.08007 * 119.73805 * 179.97438 * 25 24 23
46 46 H 1.07990 * 120.12010 * 180.02562 * 26 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 6 2.0322 -0.7104 1.2305
5 1 2.6531 -1.5885 1.1316
6 6 1.6991 -0.2393 2.4829
7 7 2.1378 -0.8590 3.5567
8 14 0.6246 1.2791 2.6540
9 1 -0.8029 0.8727 2.6997
10 1 0.9757 1.9953 3.9067
11 1 0.8470 2.1766 1.4920
12 7 2.0184 -0.6907 -1.1961
13 6 1.6644 -2.0933 -1.4279
14 6 2.7932 -0.0357 -2.0833
15 8 3.0865 1.1253 -1.8911
16 6 3.2951 -0.7461 -3.3139
17 6 4.1457 0.2153 -4.1464
18 6 4.6472 -0.4947 -5.3774
19 6 5.8350 -1.1037 -5.5198
20 7 5.9381 -1.6370 -6.7757
21 6 7.0972 -2.3746 -7.2843
22 6 4.7923 -1.3726 -7.4921
23 6 4.3765 -1.6840 -8.7827
24 6 3.1357 -1.2747 -9.2191
25 6 2.2917 -0.5576 -8.3819
26 6 2.6777 -0.2457 -7.1089
27 6 3.9312 -0.6506 -6.6458
28 1 -0.3633 -1.0276 0.0005
29 1 -0.3634 0.5139 0.8899
30 1 -0.3633 0.5138 -0.8901
31 1 1.9037 -0.5272 4.4376
32 1 2.4157 -2.7377 -0.9714
33 1 0.6904 -2.3003 -0.9845
34 1 1.6238 -2.2853 -2.5000
35 1 2.4472 -1.0882 -3.9072
36 1 3.9005 -1.6027 -3.0175
37 1 4.9938 0.5571 -3.5530
38 1 3.5408 1.0722 -4.4428
39 1 6.5968 -1.1631 -4.7566
40 1 6.9742 -3.4365 -7.0712
41 1 8.0021 -2.0090 -6.7988
42 1 7.1778 -2.2271 -8.3613
43 1 5.0259 -2.2410 -9.4416
44 1 2.8164 -1.5137 -10.2227
45 1 1.3222 -0.2438 -8.7397
46 1 2.0157 0.3120 -6.4632
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000151781844.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:00:19
Heat of formation + Delta-G solvation = 8.933101 kcal
Electronic energy + Delta-G solvation = -25585.027094 eV
Core-core repulsion = 22053.524882 eV
Total energy + Delta-G solvation = -3531.502211 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 314.174 amu
Computer time = 0.95 seconds
Orbital eigenvalues (eV)
-42.22931 -40.78453 -37.91435 -37.32971 -35.47122 -34.73612 -32.84120 -31.75748
-31.15910 -29.66144 -27.70625 -27.43163 -27.08666 -25.01572 -23.49422 -22.69758
-22.13408 -20.30243 -19.79133 -18.92355 -18.02331 -17.45299 -17.40862 -17.13733
-16.68247 -16.24372 -16.22496 -16.00958 -15.05023 -14.92311 -14.76264 -14.62512
-14.50426 -14.11813 -13.85760 -13.75669 -13.72252 -13.40765 -13.30183 -13.26264
-12.99308 -12.90842 -12.80375 -12.52779 -12.50274 -12.05311 -12.02833 -11.89404
-11.57944 -11.55600 -11.34202 -10.80091 -10.65034 -10.36761 -9.36698 -9.05838
-8.42360 -8.35470 -6.39682 0.25340 0.75181 1.25586 1.35211 1.44287
1.72334 1.80977 1.97957 2.27558 2.38132 2.99907 3.03647 3.70644
3.83850 3.86934 4.01487 4.17810 4.25173 4.27442 4.35332 4.39082
4.45489 4.48413 4.55867 4.58962 4.61988 4.65167 4.71253 4.73976
4.76771 4.82811 4.94757 4.96205 4.98570 5.08845 5.10899 5.24676
5.34151 5.36855 5.50412 5.63840 5.74856 5.77313 5.88472 5.93232
6.21262 6.34027 6.47815 6.62318 6.78285 7.22431 7.42329 8.80718
Molecular weight = 314.17amu
Principal moments of inertia in cm(-1)
A = 0.023663 B = 0.002762 C = 0.002623
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1183.022849 B =10135.431092 C =10673.633241
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.154 4.154
2 C 0.230 3.770
3 H 0.030 0.970
4 C -0.526 4.526
5 H 0.044 0.956
6 C 0.022 3.978
7 N -0.940 5.940
8 Si 0.942 3.058
9 H -0.253 1.253
10 H -0.295 1.295
11 H -0.263 1.263
12 N -0.599 5.599
13 C 0.085 3.915
14 C 0.496 3.504
15 O -0.600 6.600
16 C -0.112 4.112
17 C -0.017 4.017
18 C -0.187 4.187
19 C 0.056 3.944
20 N -0.490 5.490
21 C 0.073 3.927
22 C 0.077 3.923
23 C -0.135 4.135
24 C -0.104 4.104
25 C -0.153 4.153
26 C -0.090 4.090
27 C -0.127 4.127
28 H 0.071 0.929
29 H 0.041 0.959
30 H 0.056 0.944
31 H 0.268 0.732
32 H 0.046 0.954
33 H 0.073 0.927
34 H 0.098 0.902
35 H 0.107 0.893
36 H 0.104 0.896
37 H 0.064 0.936
38 H 0.058 0.942
39 H 0.189 0.811
40 H 0.078 0.922
41 H 0.098 0.902
42 H 0.091 0.909
43 H 0.139 0.861
44 H 0.150 0.850
45 H 0.138 0.862
46 H 0.118 0.882
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.712 -5.498 -28.032 28.952
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.212 4.212
2 C 0.126 3.874
3 H 0.048 0.952
4 C -0.564 4.564
5 H 0.062 0.938
6 C -0.176 4.176
7 N -0.580 5.580
8 Si 0.769 3.231
9 H -0.178 1.178
10 H -0.223 1.223
11 H -0.188 1.188
12 N -0.329 5.329
13 C -0.058 4.058
14 C 0.286 3.714
15 O -0.483 6.483
16 C -0.152 4.152
17 C -0.055 4.055
18 C -0.194 4.194
19 C -0.069 4.069
20 N -0.172 5.172
21 C -0.067 4.067
22 C -0.029 4.029
23 C -0.155 4.155
24 C -0.123 4.123
25 C -0.172 4.172
26 C -0.109 4.109
27 C -0.131 4.131
28 H 0.090 0.910
29 H 0.060 0.940
30 H 0.075 0.925
31 H 0.077 0.923
32 H 0.065 0.935
33 H 0.092 0.908
34 H 0.116 0.884
35 H 0.126 0.874
36 H 0.122 0.878
37 H 0.083 0.917
38 H 0.077 0.923
39 H 0.206 0.794
40 H 0.097 0.903
41 H 0.117 0.883
42 H 0.109 0.891
43 H 0.157 0.843
44 H 0.168 0.832
45 H 0.156 0.844
46 H 0.136 0.864
Dipole moment (debyes) X Y Z Total
from point charges 5.168 -5.134 -27.839 28.776
hybrid contribution -0.262 0.636 1.099 1.296
sum 4.907 -4.498 -26.740 27.556
Atomic orbital electron populations
1.22317 0.96711 1.02279 0.99893 1.18944 0.91778 0.93425 0.83253
0.95207 1.21391 1.31670 1.13066 0.90298 0.93754 1.25655 0.97182
0.99493 0.95316 1.70005 1.47205 1.42194 0.98589 0.85969 0.79911
0.80179 0.77080 1.17826 1.22281 1.18766 1.47989 1.49642 1.13396
1.21887 1.21801 1.01425 0.80198 1.02334 1.21498 0.77662 0.86753
0.85440 1.90605 1.59771 1.19522 1.78353 1.21607 1.01688 0.99519
0.92373 1.19422 0.98743 0.95868 0.91488 1.20205 0.95960 1.08408
0.94829 1.21994 0.99036 0.98313 0.87570 1.44013 1.14724 1.47609
1.10881 1.22195 0.86196 0.96721 1.01594 1.18569 0.87965 1.01614
0.94768 1.20310 0.98161 1.04405 0.92617 1.21149 0.92972 0.97678
1.00546 1.20916 1.01180 1.01349 0.93759 1.20480 0.94417 0.99384
0.96590 1.19380 0.95790 1.03557 0.94392 0.91028 0.94022 0.92541
0.92259 0.93516 0.90797 0.88388 0.87445 0.87788 0.91686 0.92317
0.79366 0.90323 0.88310 0.89070 0.84284 0.83227 0.84389 0.86424
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -6.51 8.65 71.98 0.62 -5.88 16
2 C 0.23 11.32 2.23 44.25 0.10 11.42 16
3 H 0.03 1.67 5.96 -2.39 -0.01 1.66 16
4 C -0.53 -30.15 8.95 25.60 0.23 -29.92 16
5 H 0.04 2.77 7.89 -2.91 -0.02 2.74 16
6 C 0.02 1.29 5.45 84.66 0.46 1.76 16
7 N -0.94 -58.45 13.96 21.45 0.30 -58.15 16
8 Si 0.94 45.89 24.37 68.60 1.67 47.56 16
9 H -0.25 -11.27 6.87 99.48 0.68 -10.59 16
10 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16
11 H -0.26 -12.73 6.53 99.48 0.65 -12.08 16
12 N -0.60 -24.75 2.75 -826.81 -2.28 -27.03 16
13 C 0.08 2.69 9.48 127.77 1.21 3.90 16
14 C 0.50 19.87 7.67 87.66 0.67 20.54 16
15 O -0.60 -29.21 15.31 -3.03 -0.05 -29.25 16
16 C -0.11 -3.18 4.23 29.85 0.13 -3.05 16
17 C -0.02 -0.47 5.03 29.85 0.15 -0.32 16
18 C -0.19 -4.64 5.57 -18.63 -0.10 -4.74 16
19 C 0.06 1.14 11.21 83.00 0.93 2.07 16
20 N -0.49 -8.86 3.18 -539.25 -1.71 -10.58 16
21 C 0.07 0.66 11.03 127.77 1.41 2.07 16
22 C 0.08 1.66 6.81 39.03 0.27 1.92 16
23 C -0.13 -2.30 9.97 22.37 0.22 -2.08 16
24 C -0.10 -1.67 10.01 22.30 0.22 -1.45 16
25 C -0.15 -2.84 9.97 22.03 0.22 -2.62 16
26 C -0.09 -2.08 10.05 22.23 0.22 -1.86 16
27 C -0.13 -3.16 6.35 -20.20 -0.13 -3.29 16
28 H 0.07 2.76 6.66 -2.39 -0.02 2.75 16
29 H 0.04 1.81 3.27 -2.39 -0.01 1.81 16
30 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16
31 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16
32 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16
33 H 0.07 2.31 6.43 -2.39 -0.02 2.30 16
34 H 0.10 2.27 6.44 -2.39 -0.02 2.25 16
35 H 0.11 2.62 7.40 -2.39 -0.02 2.60 16
36 H 0.10 2.63 8.11 -2.39 -0.02 2.61 16
37 H 0.06 1.94 8.10 -2.39 -0.02 1.92 16
38 H 0.06 1.82 8.10 -2.39 -0.02 1.80 16
39 H 0.19 2.81 8.06 -2.91 -0.02 2.79 16
40 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16
41 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16
42 H 0.09 0.59 8.10 -2.38 -0.02 0.57 16
43 H 0.14 1.60 8.06 -2.91 -0.02 1.58 16
44 H 0.15 1.47 8.06 -2.91 -0.02 1.45 16
45 H 0.14 1.94 8.06 -2.91 -0.02 1.91 16
46 H 0.12 2.65 8.06 -2.92 -0.02 2.63 16
Total: -1.00 -78.00 370.36 5.66 -72.34
By element:
Atomic # 1 Polarization: 15.75 SS G_CDS: 0.89 Total: 16.64 kcal
Atomic # 6 Polarization: -18.37 SS G_CDS: 6.83 Total: -11.54 kcal
Atomic # 7 Polarization: -92.06 SS G_CDS: -3.69 Total: -95.75 kcal
Atomic # 8 Polarization: -29.21 SS G_CDS: -0.05 Total: -29.25 kcal
Atomic # 14 Polarization: 45.89 SS G_CDS: 1.67 Total: 47.56 kcal
Total: -78.00 5.66 -72.34 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000151781844.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 81.273 kcal
(2) G-P(sol) polarization free energy of solvation -77.997 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.276 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.657 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.340 kcal
(6) G-S(sol) free energy of system = (1) + (5) 8.933 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.95 seconds