Wall clock time and date at job start Tue Mar 31 2020 10:43:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08993 * 109.46892 * 2 1 4 4 N 1.46498 * 109.47027 * 239.99945 * 2 1 3 5 5 C 1.38857 * 119.99707 * 85.00380 * 4 2 1 6 6 C 1.39567 * 119.84497 * 359.72264 * 5 4 2 7 7 C 1.36341 * 120.15993 * 179.71813 * 6 5 4 8 8 C 1.40891 * 119.83487 * 0.55631 * 7 6 5 9 9 C 1.41138 * 120.15361 * 179.69446 * 8 7 6 10 10 H 1.07995 * 120.00122 * 204.62239 * 9 8 7 11 11 C 1.39865 * 119.99920 * 24.62944 * 9 8 7 12 12 N 1.30906 * 119.99849 * 17.95837 * 11 9 8 13 13 Si 1.86801 * 120.00158 * 197.96257 * 11 9 8 14 14 H 1.48501 * 109.46736 * 359.97438 * 13 11 9 15 15 H 1.48495 * 109.47116 * 119.99500 * 13 11 9 16 16 H 1.48501 * 109.47220 * 239.99960 * 13 11 9 17 17 C 1.40886 * 119.68788 * 359.71940 * 8 7 6 18 18 C 1.36332 * 119.83946 * 0.02562 * 17 8 7 19 19 C 1.50696 * 109.47009 * 120.00142 * 2 1 3 20 20 N 1.30257 * 125.62170 * 74.96868 * 19 2 1 21 21 C 1.34474 * 108.70022 * 180.02562 * 20 19 2 22 22 C 1.34329 * 107.67388 * 0.02562 * 21 20 19 23 23 C 1.50697 * 126.44515 * 180.02562 * 22 21 20 24 24 C 1.53004 * 109.47225 * 0.02562 * 23 22 21 25 25 C 1.52998 * 109.47008 * 240.02048 * 23 22 21 26 26 C 1.53000 * 109.47319 * 120.02372 * 23 22 21 27 27 O 1.33978 * 125.61869 * 255.31368 * 19 2 1 28 28 H 1.09001 * 109.47398 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47381 * 300.00277 * 1 2 3 30 30 H 1.09001 * 109.46945 * 59.99874 * 1 2 3 31 31 H 0.96996 * 120.00173 * 264.99876 * 4 2 1 32 32 H 1.07996 * 119.91760 * 359.97438 * 6 5 4 33 33 H 1.07998 * 120.08032 * 180.27693 * 7 6 5 34 34 H 0.97010 * 119.99575 * 180.02562 * 12 11 9 35 35 H 1.08001 * 120.08034 * 180.02562 * 17 8 7 36 36 H 1.08001 * 119.92116 * 179.97438 * 18 17 8 37 37 H 1.08008 * 126.16159 * 180.02562 * 21 20 19 38 38 H 1.08991 * 109.46982 * 300.00088 * 24 23 22 39 39 H 1.08997 * 109.46433 * 179.97438 * 24 23 22 40 40 H 1.09002 * 109.46722 * 60.00111 * 24 23 22 41 41 H 1.09004 * 109.47084 * 179.97438 * 25 23 22 42 42 H 1.09003 * 109.47589 * 300.00247 * 25 23 22 43 43 H 1.09001 * 109.47102 * 60.00081 * 25 23 22 44 44 H 1.09010 * 109.47000 * 299.99997 * 26 23 22 45 45 H 1.09005 * 109.47273 * 59.99162 * 26 23 22 46 46 H 1.08995 * 109.47318 * 179.97438 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1510 0.0022 -2.3922 6 6 1.8127 1.3549 -2.4526 7 6 1.9458 2.0427 -3.6222 8 6 2.4152 1.3818 -4.7746 9 6 2.5495 2.0857 -5.9904 10 1 2.5155 1.5532 -6.9294 11 6 2.7268 3.4731 -5.9794 12 7 3.1167 4.0743 -4.8839 13 14 2.4072 4.4680 -7.5277 14 1 1.9798 3.5584 -8.6210 15 1 1.3371 5.4633 -7.2645 16 1 3.6512 5.1729 -7.9288 17 6 2.7493 0.0147 -4.7075 18 6 2.6160 -0.6592 -3.5299 19 6 2.0323 -0.7104 1.2304 20 7 2.0263 -1.9994 1.4178 21 6 2.5503 -2.2616 2.6282 22 6 2.8837 -1.0884 3.1910 23 6 3.5063 -0.8920 4.5492 24 6 3.7126 -2.2529 5.2174 25 6 2.5817 -0.0337 5.4148 26 6 4.8569 -0.1900 4.3945 27 8 2.5527 -0.1199 2.3146 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 2.2490 -1.6317 -1.1526 32 1 1.4484 1.8589 -1.5697 33 1 1.6879 3.0905 -3.6663 34 1 3.2394 5.0366 -4.8761 35 1 3.1100 -0.4981 -5.5869 36 1 2.8714 -1.7073 -3.4772 37 1 2.6797 -3.2394 3.0684 38 1 2.7505 -2.7530 5.3276 39 1 4.1634 -2.1107 6.1996 40 1 4.3714 -2.8643 4.6007 41 1 3.0318 0.1080 6.3974 42 1 2.4347 0.9358 4.9388 43 1 1.6195 -0.5338 5.5251 44 1 5.5157 -0.8014 3.7778 45 1 4.7101 0.7796 3.9184 46 1 5.3070 -0.0475 5.3769 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177414686.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:43:51 Heat of formation + Delta-G solvation = 32.339162 kcal Electronic energy + Delta-G solvation = -25407.055872 eV Core-core repulsion = 21876.568624 eV Total energy + Delta-G solvation = -3530.487248 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.40053 -38.23739 -37.36229 -35.82869 -34.61174 -33.32733 -30.95297 -29.50988 -28.76105 -28.03780 -27.68600 -27.63547 -24.77237 -23.58870 -22.84710 -21.53489 -20.80022 -19.83015 -19.61726 -17.39535 -17.22058 -16.66492 -16.13282 -15.39134 -15.12661 -14.88087 -14.49491 -14.43745 -13.98434 -13.53315 -13.49844 -13.44622 -12.76525 -12.63707 -12.60644 -12.52156 -12.09771 -12.07195 -11.96098 -11.83344 -11.68155 -11.45255 -11.41417 -11.29971 -11.26330 -11.08938 -11.03672 -10.78850 -10.48544 -10.43525 -9.70672 -9.31229 -9.26395 -8.74011 -8.60042 -7.50393 -6.65815 -6.43147 -4.04568 1.41360 2.48327 2.68692 2.89633 3.09543 3.15641 3.21079 3.33543 3.96420 4.05378 4.21490 4.32070 4.51197 4.54188 4.75160 4.83535 5.03444 5.15803 5.24049 5.26540 5.36718 5.37564 5.45257 5.48773 5.55094 5.63532 5.67993 5.82398 5.83038 5.86527 5.91080 6.02316 6.05367 6.23086 6.25036 6.31233 6.44631 6.87797 6.92471 7.18921 7.34871 7.51583 7.68243 7.75305 7.83235 8.14386 8.26429 8.45503 8.67152 8.78148 9.05419 9.13760 10.36261 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.024646 B = 0.002520 C = 0.002431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.813351 B =11106.563076 C =11515.924843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.259 3.741 3 H 0.097 0.903 4 N -0.745 5.745 5 C 0.090 3.910 6 C -0.164 4.164 7 C -0.125 4.125 8 C 0.076 3.924 9 C -0.465 4.465 10 H 0.073 0.927 11 C 0.074 3.926 12 N -0.806 5.806 13 Si 0.902 3.098 14 H -0.262 1.262 15 H -0.274 1.274 16 H -0.277 1.277 17 C -0.187 4.187 18 C -0.152 4.152 19 C 0.195 3.805 20 N -0.476 5.476 21 C -0.041 4.041 22 C -0.040 4.040 23 C 0.020 3.980 24 C -0.142 4.142 25 C -0.144 4.144 26 C -0.145 4.145 27 O -0.195 6.195 28 H 0.064 0.936 29 H 0.056 0.944 30 H 0.080 0.920 31 H 0.394 0.606 32 H 0.089 0.911 33 H 0.119 0.881 34 H 0.276 0.724 35 H 0.092 0.908 36 H 0.087 0.913 37 H 0.180 0.820 38 H 0.063 0.937 39 H 0.071 0.929 40 H 0.064 0.936 41 H 0.066 0.934 42 H 0.062 0.938 43 H 0.059 0.941 44 H 0.060 0.940 45 H 0.062 0.938 46 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.631 -7.013 19.650 20.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.150 3.850 3 H 0.115 0.885 4 N -0.382 5.382 5 C -0.006 4.006 6 C -0.186 4.186 7 C -0.145 4.145 8 C 0.073 3.927 9 C -0.496 4.496 10 H 0.091 0.909 11 C -0.141 4.141 12 N -0.433 5.433 13 Si 0.727 3.273 14 H -0.186 1.186 15 H -0.199 1.199 16 H -0.203 1.203 17 C -0.207 4.207 18 C -0.174 4.174 19 C -0.013 4.013 20 N -0.204 5.204 21 C -0.180 4.180 22 C -0.094 4.094 23 C 0.020 3.980 24 C -0.199 4.199 25 C -0.201 4.201 26 C -0.202 4.202 27 O -0.081 6.081 28 H 0.083 0.917 29 H 0.075 0.925 30 H 0.099 0.901 31 H 0.228 0.772 32 H 0.108 0.892 33 H 0.137 0.863 34 H 0.086 0.914 35 H 0.111 0.889 36 H 0.106 0.894 37 H 0.197 0.803 38 H 0.082 0.918 39 H 0.090 0.910 40 H 0.083 0.917 41 H 0.085 0.915 42 H 0.081 0.919 43 H 0.078 0.922 44 H 0.079 0.921 45 H 0.081 0.919 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -0.838 -7.004 19.369 20.613 hybrid contribution 0.351 0.564 -0.089 0.670 sum -0.487 -6.440 19.280 20.333 Atomic orbital electron populations 1.22294 0.93923 1.03089 1.02644 1.18768 0.93521 0.95111 0.77578 0.88481 1.43771 1.77340 1.11486 1.05630 1.17280 1.06537 0.91790 0.84997 1.20116 1.07962 0.92419 0.98115 1.20929 1.01400 0.99892 0.92249 1.17518 0.90777 0.90982 0.93405 1.19407 1.44845 0.91652 0.93700 0.90862 1.25806 0.92551 0.98471 0.97274 1.69868 1.33948 1.11006 1.28519 0.86366 0.78632 0.79777 0.82493 1.18616 1.19948 1.20293 1.20549 1.08133 0.95996 0.96006 1.19798 1.07080 0.97631 0.92849 1.26719 0.96963 0.87786 0.89800 1.70364 1.19046 1.13967 1.17055 1.23042 1.03727 0.99135 0.92081 1.23346 1.04939 0.86891 0.94219 1.19086 0.95113 0.97664 0.86168 1.21908 1.02572 0.94682 1.00711 1.21923 0.99066 0.99818 0.99273 1.21932 0.94918 1.00920 1.02417 1.84380 1.60665 1.38380 1.24633 0.91723 0.92466 0.90097 0.77188 0.89248 0.86296 0.91360 0.88944 0.89449 0.80313 0.91774 0.91044 0.91723 0.91478 0.91927 0.92171 0.92061 0.91879 0.91471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.28 9.38 37.16 0.35 -1.93 16 2 C 0.26 4.15 2.80 -69.08 -0.19 3.96 16 3 H 0.10 1.60 6.46 -51.93 -0.34 1.26 16 4 N -0.75 -13.62 5.21 -53.16 -0.28 -13.90 16 5 C 0.09 1.95 6.65 -83.69 -0.56 1.40 16 6 C -0.16 -3.76 8.73 -39.77 -0.35 -4.10 16 7 C -0.12 -3.22 8.64 -39.26 -0.34 -3.56 16 8 C 0.08 2.04 5.57 -106.79 -0.60 1.45 16 9 C -0.47 -12.57 9.03 -37.87 -0.34 -12.91 16 10 H 0.07 1.92 7.91 -52.49 -0.41 1.51 16 11 C 0.07 1.91 5.13 -17.34 -0.09 1.82 16 12 N -0.81 -21.26 10.96 55.54 0.61 -20.65 16 13 Si 0.90 19.16 29.60 -169.99 -5.03 14.13 16 14 H -0.26 -5.53 7.11 56.52 0.40 -5.13 16 15 H -0.27 -5.72 7.11 56.52 0.40 -5.31 16 16 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 17 C -0.19 -4.62 9.74 -39.27 -0.38 -5.00 16 18 C -0.15 -3.43 9.82 -39.77 -0.39 -3.82 16 19 C 0.20 3.04 7.15 -12.95 -0.09 2.95 16 20 N -0.48 -7.34 10.96 -11.10 -0.12 -7.46 16 21 C -0.04 -0.52 10.84 -17.77 -0.19 -0.72 16 22 C -0.04 -0.49 5.81 -35.69 -0.21 -0.70 16 23 C 0.02 0.17 0.99 -155.66 -0.15 0.02 16 24 C -0.14 -0.89 7.39 37.16 0.27 -0.61 16 25 C -0.14 -1.10 8.46 37.16 0.31 -0.78 16 26 C -0.14 -1.21 8.46 37.16 0.31 -0.89 16 27 O -0.19 -2.86 10.78 5.33 0.06 -2.81 16 28 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.08 1.22 7.63 -51.93 -0.40 0.82 16 31 H 0.39 7.03 8.33 -40.82 -0.34 6.69 16 32 H 0.09 1.83 6.02 -52.49 -0.32 1.51 16 33 H 0.12 3.18 6.16 -52.49 -0.32 2.86 16 34 H 0.28 6.64 8.30 -40.82 -0.34 6.30 16 35 H 0.09 2.17 8.06 -52.49 -0.42 1.74 16 36 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 37 H 0.18 1.74 7.32 -52.48 -0.38 1.35 16 38 H 0.06 0.38 7.95 -51.93 -0.41 -0.03 16 39 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.06 0.40 7.95 -51.93 -0.41 -0.01 16 41 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 42 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.06 0.54 8.14 -51.92 -0.42 0.12 16 45 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 376.82 15.07 5.68 5.68 Total: -1.00 -29.00 376.82 -8.84 -37.84 By element: Atomic # 1 Polarization: 17.73 SS G_CDS: -7.12 Total: 10.61 kcal Atomic # 6 Polarization: -20.80 SS G_CDS: -2.63 Total: -23.43 kcal Atomic # 7 Polarization: -42.22 SS G_CDS: 0.21 Total: -42.01 kcal Atomic # 8 Polarization: -2.86 SS G_CDS: 0.06 Total: -2.81 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -5.03 Total: 14.13 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -29.00 -8.84 -37.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177414686.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.179 kcal (2) G-P(sol) polarization free energy of solvation -29.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.840 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds