Wall clock time and date at job start Tue Mar 31 2020 10:43:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08993 * 109.46892 * 2 1 4 4 N 1.46498 * 109.47027 * 239.99945 * 2 1 3 5 5 C 1.38857 * 119.99707 * 85.00380 * 4 2 1 6 6 C 1.39567 * 119.84497 * 359.72264 * 5 4 2 7 7 C 1.36341 * 120.15993 * 179.71813 * 6 5 4 8 8 C 1.40891 * 119.83487 * 0.55631 * 7 6 5 9 9 C 1.41138 * 120.15361 * 179.69446 * 8 7 6 10 10 H 1.07995 * 120.00122 * 204.62239 * 9 8 7 11 11 C 1.39865 * 119.99920 * 24.62944 * 9 8 7 12 12 N 1.30906 * 119.99849 * 17.95837 * 11 9 8 13 13 Si 1.86801 * 120.00158 * 197.96257 * 11 9 8 14 14 H 1.48501 * 109.46736 * 359.97438 * 13 11 9 15 15 H 1.48495 * 109.47116 * 119.99500 * 13 11 9 16 16 H 1.48501 * 109.47220 * 239.99960 * 13 11 9 17 17 C 1.40886 * 119.68788 * 359.71940 * 8 7 6 18 18 C 1.36332 * 119.83946 * 0.02562 * 17 8 7 19 19 C 1.50696 * 109.47009 * 120.00142 * 2 1 3 20 20 N 1.30257 * 125.62170 * 74.96868 * 19 2 1 21 21 C 1.34474 * 108.70022 * 180.02562 * 20 19 2 22 22 C 1.34329 * 107.67388 * 0.02562 * 21 20 19 23 23 C 1.50697 * 126.44515 * 180.02562 * 22 21 20 24 24 C 1.53004 * 109.47225 * 0.02562 * 23 22 21 25 25 C 1.52998 * 109.47008 * 240.02048 * 23 22 21 26 26 C 1.53000 * 109.47319 * 120.02372 * 23 22 21 27 27 O 1.33978 * 125.61869 * 255.31368 * 19 2 1 28 28 H 1.09001 * 109.47398 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47381 * 300.00277 * 1 2 3 30 30 H 1.09001 * 109.46945 * 59.99874 * 1 2 3 31 31 H 0.96996 * 120.00173 * 264.99876 * 4 2 1 32 32 H 1.07996 * 119.91760 * 359.97438 * 6 5 4 33 33 H 1.07998 * 120.08032 * 180.27693 * 7 6 5 34 34 H 0.97010 * 119.99575 * 180.02562 * 12 11 9 35 35 H 1.08001 * 120.08034 * 180.02562 * 17 8 7 36 36 H 1.08001 * 119.92116 * 179.97438 * 18 17 8 37 37 H 1.08008 * 126.16159 * 180.02562 * 21 20 19 38 38 H 1.08991 * 109.46982 * 300.00088 * 24 23 22 39 39 H 1.08997 * 109.46433 * 179.97438 * 24 23 22 40 40 H 1.09002 * 109.46722 * 60.00111 * 24 23 22 41 41 H 1.09004 * 109.47084 * 179.97438 * 25 23 22 42 42 H 1.09003 * 109.47589 * 300.00247 * 25 23 22 43 43 H 1.09001 * 109.47102 * 60.00081 * 25 23 22 44 44 H 1.09010 * 109.47000 * 299.99997 * 26 23 22 45 45 H 1.09005 * 109.47273 * 59.99162 * 26 23 22 46 46 H 1.08995 * 109.47318 * 179.97438 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1510 0.0022 -2.3922 6 6 1.8127 1.3549 -2.4526 7 6 1.9458 2.0427 -3.6222 8 6 2.4152 1.3818 -4.7746 9 6 2.5495 2.0857 -5.9904 10 1 2.5155 1.5532 -6.9294 11 6 2.7268 3.4731 -5.9794 12 7 3.1167 4.0743 -4.8839 13 14 2.4072 4.4680 -7.5277 14 1 1.9798 3.5584 -8.6210 15 1 1.3371 5.4633 -7.2645 16 1 3.6512 5.1729 -7.9288 17 6 2.7493 0.0147 -4.7075 18 6 2.6160 -0.6592 -3.5299 19 6 2.0323 -0.7104 1.2304 20 7 2.0263 -1.9994 1.4178 21 6 2.5503 -2.2616 2.6282 22 6 2.8837 -1.0884 3.1910 23 6 3.5063 -0.8920 4.5492 24 6 3.7126 -2.2529 5.2174 25 6 2.5817 -0.0337 5.4148 26 6 4.8569 -0.1900 4.3945 27 8 2.5527 -0.1199 2.3146 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 2.2490 -1.6317 -1.1526 32 1 1.4484 1.8589 -1.5697 33 1 1.6879 3.0905 -3.6663 34 1 3.2394 5.0366 -4.8761 35 1 3.1100 -0.4981 -5.5869 36 1 2.8714 -1.7073 -3.4772 37 1 2.6797 -3.2394 3.0684 38 1 2.7505 -2.7530 5.3276 39 1 4.1634 -2.1107 6.1996 40 1 4.3714 -2.8643 4.6007 41 1 3.0318 0.1080 6.3974 42 1 2.4347 0.9358 4.9388 43 1 1.6195 -0.5338 5.5251 44 1 5.5157 -0.8014 3.7778 45 1 4.7101 0.7796 3.9184 46 1 5.3070 -0.0475 5.3769 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000177414686.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:43:50 Heat of formation + Delta-G solvation = 15.903442 kcal Electronic energy + Delta-G solvation = -25407.768579 eV Core-core repulsion = 21876.568624 eV Total energy + Delta-G solvation = -3531.199955 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -44.47018 -39.95528 -38.16272 -37.32996 -35.78431 -35.09970 -32.52573 -31.36981 -29.98419 -29.60411 -28.26201 -28.25494 -26.44644 -24.93654 -23.84869 -23.19474 -22.43974 -21.19468 -20.63959 -19.15753 -18.66796 -17.79386 -17.41468 -16.86733 -16.70951 -16.07426 -15.71317 -15.22451 -15.08628 -14.90128 -14.87486 -14.40230 -14.36597 -14.29867 -13.76232 -13.61450 -13.28751 -13.23043 -13.14655 -13.01602 -12.74312 -12.65807 -12.61841 -12.51839 -12.44127 -12.37079 -12.26969 -12.02142 -11.94942 -11.57678 -11.47256 -11.17260 -11.10505 -10.42934 -9.73288 -9.40594 -8.55804 -8.23663 -6.01851 0.35271 1.09072 1.18374 1.41380 1.43203 1.55491 1.58328 1.62358 2.28267 2.79997 2.83606 2.92529 3.54451 3.78615 3.84177 3.90239 3.93840 4.06406 4.17665 4.19343 4.45576 4.48762 4.55443 4.64085 4.67338 4.70838 4.79615 4.82576 4.86710 4.93133 4.96695 5.02656 5.04449 5.10504 5.15992 5.21144 5.27071 5.29037 5.30689 5.37983 5.44748 5.66057 5.78531 5.94352 6.18814 6.37170 6.59937 6.68653 6.83120 7.05076 7.08813 7.24148 8.48160 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.024646 B = 0.002520 C = 0.002431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.813351 B =11106.563076 C =11515.924843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.258 3.742 3 H 0.091 0.909 4 N -0.738 5.738 5 C 0.111 3.889 6 C -0.168 4.168 7 C -0.143 4.143 8 C 0.039 3.961 9 C -0.503 4.503 10 H 0.068 0.932 11 C 0.032 3.968 12 N -0.839 5.839 13 Si 0.976 3.024 14 H -0.261 1.261 15 H -0.266 1.266 16 H -0.269 1.269 17 C -0.196 4.196 18 C -0.160 4.160 19 C 0.173 3.827 20 N -0.488 5.488 21 C -0.054 4.054 22 C -0.033 4.033 23 C 0.018 3.982 24 C -0.139 4.139 25 C -0.142 4.142 26 C -0.144 4.144 27 O -0.207 6.207 28 H 0.063 0.937 29 H 0.078 0.922 30 H 0.071 0.929 31 H 0.398 0.602 32 H 0.111 0.889 33 H 0.102 0.898 34 H 0.283 0.717 35 H 0.097 0.903 36 H 0.113 0.887 37 H 0.207 0.793 38 H 0.069 0.931 39 H 0.092 0.908 40 H 0.064 0.936 41 H 0.091 0.909 42 H 0.046 0.954 43 H 0.060 0.940 44 H 0.053 0.947 45 H 0.044 0.956 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.593 -7.901 21.862 23.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.150 3.850 3 H 0.109 0.891 4 N -0.374 5.374 5 C 0.013 3.987 6 C -0.190 4.190 7 C -0.163 4.163 8 C 0.036 3.964 9 C -0.534 4.534 10 H 0.086 0.914 11 C -0.180 4.180 12 N -0.467 5.467 13 Si 0.798 3.202 14 H -0.185 1.185 15 H -0.191 1.191 16 H -0.195 1.195 17 C -0.216 4.216 18 C -0.182 4.182 19 C -0.034 4.034 20 N -0.218 5.218 21 C -0.192 4.192 22 C -0.086 4.086 23 C 0.017 3.983 24 C -0.196 4.196 25 C -0.199 4.199 26 C -0.201 4.201 27 O -0.093 6.093 28 H 0.082 0.918 29 H 0.097 0.903 30 H 0.090 0.910 31 H 0.233 0.767 32 H 0.129 0.871 33 H 0.120 0.880 34 H 0.093 0.907 35 H 0.115 0.885 36 H 0.131 0.869 37 H 0.224 0.776 38 H 0.088 0.912 39 H 0.111 0.889 40 H 0.083 0.917 41 H 0.110 0.890 42 H 0.065 0.935 43 H 0.079 0.921 44 H 0.073 0.927 45 H 0.063 0.937 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -0.805 -7.913 21.621 23.038 hybrid contribution 0.379 0.693 -0.534 0.954 sum -0.426 -7.219 21.087 22.292 Atomic orbital electron populations 1.22193 0.92400 1.03217 1.03211 1.18801 0.94551 0.94530 0.77088 0.89128 1.43768 1.76700 1.11605 1.05357 1.17334 1.03971 0.91421 0.85996 1.20272 1.07784 0.93012 0.97957 1.20876 1.02672 0.99438 0.93280 1.17844 0.92327 0.92185 0.94045 1.19611 1.47135 0.92963 0.93672 0.91421 1.26609 0.91730 0.99009 1.00652 1.69923 1.34642 1.11615 1.30516 0.85255 0.78743 0.78008 0.78215 1.18499 1.19052 1.19450 1.20733 1.08154 0.95594 0.97163 1.20057 1.06847 0.98887 0.92372 1.26389 0.98804 0.87957 0.90221 1.70326 1.19205 1.13842 1.18402 1.23524 1.03781 1.00577 0.91362 1.24185 1.03288 0.86292 0.94835 1.19376 0.94969 0.99477 0.84467 1.21935 1.03160 0.93016 1.01496 1.21925 0.99138 0.98726 1.00103 1.21943 0.94842 0.99731 1.03618 1.84376 1.60716 1.39330 1.24899 0.91759 0.90349 0.91042 0.76671 0.87110 0.87972 0.90710 0.88462 0.86874 0.77613 0.91205 0.88880 0.91671 0.89041 0.93476 0.92129 0.92746 0.93678 0.88891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.12 9.38 71.98 0.68 -3.44 16 2 C 0.26 8.06 2.80 44.24 0.12 8.19 16 3 H 0.09 2.95 6.46 -2.39 -0.02 2.93 16 4 N -0.74 -26.27 5.21 -322.10 -1.68 -27.95 16 5 C 0.11 4.77 6.65 38.67 0.26 5.02 16 6 C -0.17 -7.76 8.73 22.15 0.19 -7.57 16 7 C -0.14 -7.61 8.64 22.48 0.19 -7.42 16 8 C 0.04 2.16 5.57 -21.27 -0.12 2.04 16 9 C -0.50 -28.22 9.03 23.38 0.21 -28.01 16 10 H 0.07 3.70 7.91 -2.91 -0.02 3.68 16 11 C 0.03 1.69 5.13 85.22 0.44 2.13 16 12 N -0.84 -45.55 10.96 21.82 0.24 -45.31 16 13 Si 0.98 40.06 29.60 68.60 2.03 42.09 16 14 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 15 H -0.27 -10.45 7.11 99.48 0.71 -9.74 16 16 H -0.27 -10.62 7.11 99.48 0.71 -9.92 16 17 C -0.20 -9.92 9.74 22.47 0.22 -9.70 16 18 C -0.16 -7.16 9.82 22.15 0.22 -6.94 16 19 C 0.17 5.25 7.15 88.34 0.63 5.88 16 20 N -0.49 -14.39 10.96 -303.82 -3.33 -17.72 16 21 C -0.05 -1.27 10.84 83.39 0.90 -0.37 16 22 C -0.03 -0.74 5.81 24.79 0.14 -0.60 16 23 C 0.02 0.26 0.99 -52.93 -0.05 0.21 16 24 C -0.14 -1.28 7.39 71.98 0.53 -0.74 16 25 C -0.14 -1.83 8.46 71.98 0.61 -1.22 16 26 C -0.14 -2.12 8.46 71.98 0.61 -1.52 16 27 O -0.21 -5.93 10.78 -3.83 -0.04 -5.97 16 28 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 29 H 0.08 1.80 8.14 -2.38 -0.02 1.78 16 30 H 0.07 2.09 7.63 -2.39 -0.02 2.07 16 31 H 0.40 13.68 8.33 -92.71 -0.77 12.91 16 32 H 0.11 4.53 6.02 -2.91 -0.02 4.51 16 33 H 0.10 5.72 6.16 -2.91 -0.02 5.70 16 34 H 0.28 13.91 8.30 -92.70 -0.77 13.14 16 35 H 0.10 4.67 8.06 -2.91 -0.02 4.65 16 36 H 0.11 4.42 8.06 -2.91 -0.02 4.40 16 37 H 0.21 3.44 7.32 -2.91 -0.02 3.42 16 38 H 0.07 0.58 7.95 -2.39 -0.02 0.56 16 39 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 40 H 0.06 0.61 7.95 -2.39 -0.02 0.59 16 41 H 0.09 0.74 8.14 -2.38 -0.02 0.72 16 42 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 43 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 44 H 0.05 0.87 8.14 -2.38 -0.02 0.85 16 45 H 0.04 0.82 8.14 -2.38 -0.02 0.80 16 46 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 Total: -1.00 -64.34 376.82 3.21 -61.13 By element: Atomic # 1 Polarization: 37.58 SS G_CDS: 0.21 Total: 37.79 kcal Atomic # 6 Polarization: -49.85 SS G_CDS: 5.79 Total: -44.07 kcal Atomic # 7 Polarization: -86.20 SS G_CDS: -4.77 Total: -90.97 kcal Atomic # 8 Polarization: -5.93 SS G_CDS: -0.04 Total: -5.97 kcal Atomic # 14 Polarization: 40.06 SS G_CDS: 2.03 Total: 42.09 kcal Total: -64.34 3.21 -61.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177414686.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.029 kcal (2) G-P(sol) polarization free energy of solvation -64.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.125 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds