Wall clock time and date at job start Tue Mar 31 2020 11:00:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.47227 * 2 1 4 4 C 1.50696 * 109.47424 * 120.00695 * 2 1 3 5 5 H 1.07991 * 120.00754 * 119.99652 * 4 2 1 6 6 C 1.37881 * 119.99676 * 300.00174 * 4 2 1 7 7 N 1.31514 * 120.00035 * 180.02562 * 6 4 2 8 8 Si 1.86806 * 119.99976 * 359.97438 * 6 4 2 9 9 H 1.48501 * 109.46624 * 90.00444 * 8 6 4 10 10 H 1.48497 * 109.47111 * 210.00308 * 8 6 4 11 11 H 1.48496 * 109.47019 * 330.00830 * 8 6 4 12 12 N 1.46504 * 109.47079 * 240.00305 * 2 1 3 13 13 C 1.46496 * 119.99954 * 294.19927 * 12 2 1 14 14 C 1.34780 * 120.00153 * 114.19332 * 12 2 1 15 15 O 1.21282 * 120.00094 * 184.16173 * 14 12 2 16 16 C 1.50703 * 119.99859 * 4.16658 * 14 12 2 17 17 H 1.09001 * 109.46944 * 310.56921 * 16 14 12 18 18 C 1.53002 * 109.46980 * 70.56774 * 16 14 12 19 19 C 1.50697 * 109.47038 * 190.56776 * 16 14 12 20 20 C 1.34240 * 126.50156 * 299.97274 * 19 16 14 21 21 N 1.36832 * 109.93138 * 180.02562 * 20 19 16 22 22 C 1.46490 * 125.06641 * 180.02562 * 21 20 19 23 23 C 1.37694 * 109.87030 * 0.02562 * 21 20 19 24 24 C 1.39126 * 133.50311 * 179.97438 * 23 21 20 25 25 C 1.37755 * 119.77473 * 179.77064 * 24 23 21 26 26 C 1.38828 * 120.66665 * 0.51595 * 25 24 23 27 27 C 1.36631 * 120.52639 * 359.48248 * 26 25 24 28 28 C 1.39622 * 119.76541 * 0.25519 * 27 26 25 29 29 H 1.09002 * 109.46981 * 59.99411 * 1 2 3 30 30 H 1.08998 * 109.47031 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46611 * 299.99899 * 1 2 3 32 32 H 0.97001 * 119.99677 * 179.97438 * 7 6 4 33 33 H 1.09000 * 109.47116 * 275.08741 * 13 12 2 34 34 H 1.09002 * 109.47231 * 35.09161 * 13 12 2 35 35 H 1.09004 * 109.47071 * 155.09258 * 13 12 2 36 36 H 1.08990 * 109.47217 * 58.58798 * 18 16 14 37 37 H 1.09003 * 109.47117 * 178.59324 * 18 16 14 38 38 H 1.09004 * 109.46808 * 298.58473 * 18 16 14 39 39 H 1.08002 * 125.03493 * 0.02562 * 20 19 16 40 40 H 1.09005 * 109.47200 * 269.96187 * 22 21 20 41 41 H 1.09007 * 109.47281 * 29.95254 * 22 21 20 42 42 H 1.09001 * 109.47639 * 149.95907 * 22 21 20 43 43 H 1.07997 * 120.11395 * 0.05380 * 24 23 21 44 44 H 1.07995 * 119.66347 * 180.25597 * 25 24 23 45 45 H 1.07997 * 119.74054 * 179.76355 * 26 25 24 46 46 H 1.08000 * 120.11764 * 180.28069 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1312 6 6 1.6993 -0.2396 2.4827 7 7 2.1381 -0.8593 3.5564 8 14 0.6258 1.2796 2.6542 9 1 -0.8020 0.8741 2.6994 10 1 0.9771 1.9951 3.9071 11 1 0.8489 2.1771 1.4923 12 7 2.0183 -0.6906 -1.1962 13 6 1.7722 -2.1247 -1.3659 14 6 2.6940 -0.0064 -2.1407 15 8 3.0324 -0.5603 -3.1652 16 6 3.0290 1.4468 -1.9237 17 1 2.1336 1.9829 -1.6090 18 6 4.1024 1.5664 -0.8400 19 6 3.5445 2.0408 -3.2091 20 6 4.6276 1.6425 -3.8950 21 7 4.7837 2.4177 -5.0116 22 6 5.8588 2.2694 -5.9956 23 6 3.7796 3.3580 -5.0728 24 6 3.4699 4.3711 -5.9745 25 6 2.3655 5.1655 -5.7581 26 6 1.5624 4.9729 -4.6421 27 6 1.8483 3.9839 -3.7438 28 6 2.9597 3.1635 -3.9464 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3632 0.5138 0.8900 32 1 1.9040 -0.5277 4.4374 33 1 2.5475 -2.6901 -0.8488 34 1 0.7978 -2.3781 -0.9480 35 1 1.7881 -2.3730 -2.4272 36 1 4.9887 1.0093 -1.1435 37 1 4.3627 2.6156 -0.7006 38 1 3.7203 1.1594 0.0963 39 1 5.2792 0.8304 -3.6079 40 1 6.7067 2.8890 -5.7034 41 1 6.1698 1.2255 -6.0395 42 1 5.5002 2.5833 -6.9759 43 1 4.0905 4.5313 -6.8437 44 1 2.1243 5.9488 -6.4614 45 1 0.7023 5.6069 -4.4851 46 1 1.2165 3.8369 -2.8803 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000185315561.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:34 Heat of formation + Delta-G solvation = 36.240954 kcal Electronic energy + Delta-G solvation = -26833.819390 eV Core-core repulsion = 23303.501336 eV Total energy + Delta-G solvation = -3530.318054 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.29282 -39.28608 -36.96475 -35.71864 -34.28309 -32.55296 -31.43162 -30.26138 -30.09657 -28.55495 -26.49474 -26.07379 -25.23768 -23.46173 -22.49401 -21.52881 -21.29166 -19.70779 -17.93796 -17.20118 -16.54093 -16.49521 -15.86887 -15.42224 -15.23733 -15.17185 -14.91976 -14.02654 -13.90398 -13.77756 -13.47940 -13.23408 -12.99343 -12.83839 -12.62534 -12.56380 -12.37357 -12.29115 -11.88660 -11.71001 -11.60324 -11.48836 -11.28795 -11.14343 -11.02354 -10.79214 -10.62513 -10.55748 -10.19780 -9.75071 -9.45475 -9.38761 -8.93268 -8.71110 -8.02437 -7.69813 -7.39358 -6.22633 -4.24694 1.25675 1.72999 2.83380 2.91297 3.16349 3.25123 3.29806 3.35527 3.90581 4.07640 4.24949 4.67323 4.75509 4.93990 5.04559 5.06993 5.08240 5.17895 5.24669 5.30939 5.38357 5.56084 5.60351 5.72869 5.84824 5.86581 5.98489 6.04401 6.10305 6.19568 6.21736 6.28693 6.33692 6.40089 6.40860 6.53968 6.58800 6.62294 6.72085 6.78490 6.90135 6.92746 7.01001 7.29479 7.34991 7.44385 7.57626 8.10821 8.50993 8.80382 8.94801 9.37510 10.89847 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.016863 B = 0.004180 C = 0.003769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.051907 B = 6696.677196 C = 7428.226618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.222 3.778 3 H 0.057 0.943 4 C -0.529 4.529 5 H 0.082 0.918 6 C 0.078 3.922 7 N -0.890 5.890 8 Si 0.879 3.121 9 H -0.276 1.276 10 H -0.294 1.294 11 H -0.264 1.264 12 N -0.586 5.586 13 C 0.097 3.903 14 C 0.517 3.483 15 O -0.565 6.565 16 C -0.032 4.032 17 H 0.095 0.905 18 C -0.146 4.146 19 C -0.149 4.149 20 C 0.086 3.914 21 N -0.491 5.491 22 C 0.082 3.918 23 C 0.095 3.905 24 C -0.131 4.131 25 C -0.106 4.106 26 C -0.152 4.152 27 C -0.069 4.069 28 C -0.095 4.095 29 H 0.034 0.966 30 H 0.058 0.942 31 H 0.050 0.950 32 H 0.267 0.733 33 H 0.051 0.949 34 H 0.064 0.936 35 H 0.061 0.939 36 H 0.054 0.946 37 H 0.060 0.940 38 H 0.089 0.911 39 H 0.166 0.834 40 H 0.066 0.934 41 H 0.082 0.918 42 H 0.076 0.924 43 H 0.114 0.886 44 H 0.120 0.880 45 H 0.119 0.881 46 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.156 9.640 -15.833 18.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.120 3.880 3 H 0.074 0.926 4 C -0.567 4.567 5 H 0.100 0.900 6 C -0.126 4.126 7 N -0.527 5.527 8 Si 0.709 3.291 9 H -0.203 1.203 10 H -0.221 1.221 11 H -0.189 1.189 12 N -0.316 5.316 13 C -0.046 4.046 14 C 0.305 3.695 15 O -0.445 6.445 16 C -0.054 4.054 17 H 0.113 0.887 18 C -0.203 4.203 19 C -0.155 4.155 20 C -0.038 4.038 21 N -0.174 5.174 22 C -0.060 4.060 23 C -0.011 4.011 24 C -0.152 4.152 25 C -0.125 4.125 26 C -0.171 4.171 27 C -0.088 4.088 28 C -0.100 4.100 29 H 0.053 0.947 30 H 0.077 0.923 31 H 0.069 0.931 32 H 0.077 0.923 33 H 0.069 0.931 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.073 0.927 37 H 0.079 0.921 38 H 0.108 0.892 39 H 0.183 0.817 40 H 0.084 0.916 41 H 0.101 0.899 42 H 0.095 0.905 43 H 0.132 0.868 44 H 0.138 0.862 45 H 0.137 0.863 46 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 3.612 9.246 -16.359 19.135 hybrid contribution -0.668 0.650 0.364 1.001 sum 2.944 9.897 -15.994 19.038 Atomic orbital electron populations 1.22516 0.99212 1.01543 0.99200 1.19515 0.90359 0.94304 0.83847 0.92600 1.21132 1.32843 1.14587 0.88174 0.90005 1.24883 0.95468 0.96544 0.95665 1.69870 1.44830 1.39992 0.98046 0.86985 0.80868 0.83734 0.77489 1.20319 1.22084 1.18878 1.47838 1.53816 1.09193 1.20719 1.21374 1.01185 0.81342 1.00682 1.20417 0.77751 0.88637 0.82717 1.90579 1.55149 1.71054 1.27741 1.19518 1.00188 0.92896 0.92753 0.88720 1.21912 0.97521 1.02107 0.98771 1.19684 0.97975 0.99180 0.98709 1.21501 0.99451 0.96024 0.86851 1.43747 1.23587 1.28364 1.21752 1.21871 0.89158 1.03337 0.91600 1.18219 0.91097 0.93938 0.97850 1.19926 0.99739 0.96470 0.99079 1.20711 0.94725 0.99219 0.97895 1.20555 1.00959 0.99811 0.95793 1.20307 0.95356 0.94089 0.99039 1.19093 0.96960 0.98238 0.95672 0.94726 0.92313 0.93134 0.92328 0.93067 0.91683 0.91986 0.92678 0.92104 0.89184 0.81658 0.91576 0.89944 0.90484 0.86812 0.86208 0.86333 0.86178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.38 8.74 37.16 0.32 -3.06 16 2 C 0.22 4.82 1.35 -69.08 -0.09 4.73 16 3 H 0.06 1.20 3.51 -51.93 -0.18 1.02 16 4 C -0.53 -13.50 8.59 -34.44 -0.30 -13.80 16 5 H 0.08 2.31 7.43 -52.49 -0.39 1.92 16 6 C 0.08 2.06 5.45 -17.82 -0.10 1.96 16 7 N -0.89 -25.41 13.96 55.43 0.77 -24.64 16 8 Si 0.88 20.05 24.37 -169.99 -4.14 15.91 16 9 H -0.28 -6.19 6.87 56.52 0.39 -5.80 16 10 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.26 -5.61 6.53 56.52 0.37 -5.25 16 12 N -0.59 -12.08 2.75 -175.26 -0.48 -12.56 16 13 C 0.10 1.86 9.62 59.84 0.58 2.43 16 14 C 0.52 10.44 6.91 -10.98 -0.08 10.36 16 15 O -0.56 -12.33 14.73 5.56 0.08 -12.25 16 16 C -0.03 -0.56 2.25 -92.92 -0.21 -0.77 16 17 H 0.09 1.66 7.12 -51.93 -0.37 1.29 16 18 C -0.15 -2.47 8.69 37.16 0.32 -2.14 16 19 C -0.15 -2.52 4.74 -102.71 -0.49 -3.01 16 20 C 0.09 1.33 9.78 -16.73 -0.16 1.17 16 21 N -0.49 -6.68 3.18 -121.80 -0.39 -7.07 16 22 C 0.08 0.73 11.03 59.84 0.66 1.39 16 23 C 0.09 1.39 6.81 -83.98 -0.57 0.82 16 24 C -0.13 -1.61 9.97 -39.43 -0.39 -2.00 16 25 C -0.11 -1.22 10.01 -39.54 -0.40 -1.61 16 26 C -0.15 -1.87 9.97 -39.94 -0.40 -2.27 16 27 C -0.07 -1.01 10.05 -39.65 -0.40 -1.41 16 28 C -0.09 -1.54 6.35 -105.14 -0.67 -2.20 16 29 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.06 1.16 6.90 -51.93 -0.36 0.80 16 31 H 0.05 1.05 3.27 -51.93 -0.17 0.88 16 32 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 33 H 0.05 1.00 7.81 -51.93 -0.41 0.59 16 34 H 0.06 1.18 6.75 -51.93 -0.35 0.83 16 35 H 0.06 1.14 7.23 -51.93 -0.38 0.76 16 36 H 0.05 0.89 8.05 -51.93 -0.42 0.47 16 37 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 38 H 0.09 1.73 5.88 -51.93 -0.31 1.42 16 39 H 0.17 2.41 8.06 -52.49 -0.42 1.98 16 40 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.08 0.64 8.14 -51.92 -0.42 0.22 16 42 H 0.08 0.57 8.10 -51.93 -0.42 0.15 16 43 H 0.11 1.10 8.06 -52.49 -0.42 0.67 16 44 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 45 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 46 H 0.12 1.63 8.06 -52.49 -0.42 1.20 16 LS Contribution 363.01 15.07 5.47 5.47 Total: -1.00 -31.01 363.01 -7.78 -38.79 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: -6.73 Total: 5.75 kcal Atomic # 6 Polarization: -7.04 SS G_CDS: -2.36 Total: -9.41 kcal Atomic # 7 Polarization: -44.17 SS G_CDS: -0.10 Total: -44.26 kcal Atomic # 8 Polarization: -12.33 SS G_CDS: 0.08 Total: -12.25 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -4.14 Total: 15.91 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.01 -7.78 -38.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185315561.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.032 kcal (2) G-P(sol) polarization free energy of solvation -31.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.791 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds