Wall clock time and date at job start Tue Mar 31 2020 11:00:34
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 H 1.08996 * 109.47227 * 2 1
4 4 C 1.50696 * 109.47424 * 120.00695 * 2 1 3
5 5 H 1.07991 * 120.00754 * 119.99652 * 4 2 1
6 6 C 1.37881 * 119.99676 * 300.00174 * 4 2 1
7 7 N 1.31514 * 120.00035 * 180.02562 * 6 4 2
8 8 Si 1.86806 * 119.99976 * 359.97438 * 6 4 2
9 9 H 1.48501 * 109.46624 * 90.00444 * 8 6 4
10 10 H 1.48497 * 109.47111 * 210.00308 * 8 6 4
11 11 H 1.48496 * 109.47019 * 330.00830 * 8 6 4
12 12 N 1.46504 * 109.47079 * 240.00305 * 2 1 3
13 13 C 1.46496 * 119.99954 * 294.19927 * 12 2 1
14 14 C 1.34780 * 120.00153 * 114.19332 * 12 2 1
15 15 O 1.21282 * 120.00094 * 184.16173 * 14 12 2
16 16 C 1.50703 * 119.99859 * 4.16658 * 14 12 2
17 17 H 1.09001 * 109.46944 * 310.56921 * 16 14 12
18 18 C 1.53002 * 109.46980 * 70.56774 * 16 14 12
19 19 C 1.50697 * 109.47038 * 190.56776 * 16 14 12
20 20 C 1.34240 * 126.50156 * 299.97274 * 19 16 14
21 21 N 1.36832 * 109.93138 * 180.02562 * 20 19 16
22 22 C 1.46490 * 125.06641 * 180.02562 * 21 20 19
23 23 C 1.37694 * 109.87030 * 0.02562 * 21 20 19
24 24 C 1.39126 * 133.50311 * 179.97438 * 23 21 20
25 25 C 1.37755 * 119.77473 * 179.77064 * 24 23 21
26 26 C 1.38828 * 120.66665 * 0.51595 * 25 24 23
27 27 C 1.36631 * 120.52639 * 359.48248 * 26 25 24
28 28 C 1.39622 * 119.76541 * 0.25519 * 27 26 25
29 29 H 1.09002 * 109.46981 * 59.99411 * 1 2 3
30 30 H 1.08998 * 109.47031 * 179.97438 * 1 2 3
31 31 H 1.08999 * 109.46611 * 299.99899 * 1 2 3
32 32 H 0.97001 * 119.99677 * 179.97438 * 7 6 4
33 33 H 1.09000 * 109.47116 * 275.08741 * 13 12 2
34 34 H 1.09002 * 109.47231 * 35.09161 * 13 12 2
35 35 H 1.09004 * 109.47071 * 155.09258 * 13 12 2
36 36 H 1.08990 * 109.47217 * 58.58798 * 18 16 14
37 37 H 1.09003 * 109.47117 * 178.59324 * 18 16 14
38 38 H 1.09004 * 109.46808 * 298.58473 * 18 16 14
39 39 H 1.08002 * 125.03493 * 0.02562 * 20 19 16
40 40 H 1.09005 * 109.47200 * 269.96187 * 22 21 20
41 41 H 1.09007 * 109.47281 * 29.95254 * 22 21 20
42 42 H 1.09001 * 109.47639 * 149.95907 * 22 21 20
43 43 H 1.07997 * 120.11395 * 0.05380 * 24 23 21
44 44 H 1.07995 * 119.66347 * 180.25597 * 25 24 23
45 45 H 1.07997 * 119.74054 * 179.76355 * 26 25 24
46 46 H 1.08000 * 120.11764 * 180.28069 * 27 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 6 2.0324 -0.7105 1.2303
5 1 2.6532 -1.5886 1.1312
6 6 1.6993 -0.2396 2.4827
7 7 2.1381 -0.8593 3.5564
8 14 0.6258 1.2796 2.6542
9 1 -0.8020 0.8741 2.6994
10 1 0.9771 1.9951 3.9071
11 1 0.8489 2.1771 1.4923
12 7 2.0183 -0.6906 -1.1962
13 6 1.7722 -2.1247 -1.3659
14 6 2.6940 -0.0064 -2.1407
15 8 3.0324 -0.5603 -3.1652
16 6 3.0290 1.4468 -1.9237
17 1 2.1336 1.9829 -1.6090
18 6 4.1024 1.5664 -0.8400
19 6 3.5445 2.0408 -3.2091
20 6 4.6276 1.6425 -3.8950
21 7 4.7837 2.4177 -5.0116
22 6 5.8588 2.2694 -5.9956
23 6 3.7796 3.3580 -5.0728
24 6 3.4699 4.3711 -5.9745
25 6 2.3655 5.1655 -5.7581
26 6 1.5624 4.9729 -4.6421
27 6 1.8483 3.9839 -3.7438
28 6 2.9597 3.1635 -3.9464
29 1 -0.3633 0.5139 -0.8900
30 1 -0.3633 -1.0276 -0.0005
31 1 -0.3632 0.5138 0.8900
32 1 1.9040 -0.5277 4.4374
33 1 2.5475 -2.6901 -0.8488
34 1 0.7978 -2.3781 -0.9480
35 1 1.7881 -2.3730 -2.4272
36 1 4.9887 1.0093 -1.1435
37 1 4.3627 2.6156 -0.7006
38 1 3.7203 1.1594 0.0963
39 1 5.2792 0.8304 -3.6079
40 1 6.7067 2.8890 -5.7034
41 1 6.1698 1.2255 -6.0395
42 1 5.5002 2.5833 -6.9759
43 1 4.0905 4.5313 -6.8437
44 1 2.1243 5.9488 -6.4614
45 1 0.7023 5.6069 -4.4851
46 1 1.2165 3.8369 -2.8803
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000185315561.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:00:34
Heat of formation + Delta-G solvation = 19.461705 kcal
Electronic energy + Delta-G solvation = -26834.546993 eV
Core-core repulsion = 23303.501336 eV
Total energy + Delta-G solvation = -3531.045657 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 314.174 amu
Computer time = 0.75 seconds
Orbital eigenvalues (eV)
-42.35151 -40.84982 -37.92883 -37.42260 -35.54623 -34.51450 -32.53266 -31.87047
-31.16817 -29.58001 -28.00875 -27.26375 -26.98476 -24.81889 -23.53684 -23.16011
-22.29298 -20.98287 -19.37272 -18.95019 -17.96736 -17.75001 -17.16104 -16.90346
-16.48090 -16.28602 -16.16160 -15.71241 -15.10566 -14.90360 -14.77990 -14.66380
-14.47774 -14.11327 -14.04492 -13.74033 -13.60405 -13.53815 -13.38402 -13.13266
-13.01313 -12.91470 -12.70582 -12.43123 -12.37606 -12.09563 -12.04958 -11.95711
-11.63553 -11.48030 -11.32098 -10.78449 -10.58775 -10.37825 -9.40014 -9.03823
-8.43849 -8.27913 -6.34089 0.26091 0.75602 1.35950 1.41438 1.50463
1.68416 1.75792 1.96829 2.33286 2.39354 3.03667 3.06964 3.65587
3.78229 3.88185 3.92124 4.11373 4.26825 4.29308 4.34266 4.35382
4.42810 4.46247 4.57757 4.59966 4.64229 4.66258 4.70612 4.75114
4.78843 4.84042 4.90927 4.94040 4.97643 4.99715 5.07787 5.25280
5.29245 5.37807 5.50658 5.61990 5.75258 5.79918 5.87798 5.94362
6.16306 6.31720 6.47860 6.70038 6.75329 7.25757 7.38113 8.88172
Molecular weight = 314.17amu
Principal moments of inertia in cm(-1)
A = 0.016863 B = 0.004180 C = 0.003769
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1660.051907 B = 6696.677196 C = 7428.226618
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.165 4.165
2 C 0.227 3.773
3 H 0.065 0.935
4 C -0.523 4.523
5 H 0.040 0.960
6 C 0.027 3.973
7 N -0.941 5.941
8 Si 0.934 3.066
9 H -0.265 1.265
10 H -0.299 1.299
11 H -0.237 1.237
12 N -0.593 5.593
13 C 0.098 3.902
14 C 0.514 3.486
15 O -0.583 6.583
16 C -0.024 4.024
17 H 0.096 0.904
18 C -0.137 4.137
19 C -0.177 4.177
20 C 0.081 3.919
21 N -0.490 5.490
22 C 0.074 3.926
23 C 0.077 3.923
24 C -0.133 4.133
25 C -0.104 4.104
26 C -0.150 4.150
27 C -0.094 4.094
28 C -0.126 4.126
29 H 0.059 0.941
30 H 0.058 0.942
31 H 0.049 0.951
32 H 0.267 0.733
33 H 0.038 0.962
34 H 0.073 0.927
35 H 0.069 0.931
36 H 0.055 0.945
37 H 0.079 0.921
38 H 0.064 0.936
39 H 0.166 0.834
40 H 0.083 0.917
41 H 0.090 0.910
42 H 0.095 0.905
43 H 0.142 0.858
44 H 0.154 0.846
45 H 0.143 0.857
46 H 0.120 0.880
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.386 12.417 -18.334 22.271
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.223 4.223
2 C 0.125 3.875
3 H 0.082 0.918
4 C -0.562 4.562
5 H 0.058 0.942
6 C -0.172 4.172
7 N -0.580 5.580
8 Si 0.760 3.240
9 H -0.191 1.191
10 H -0.227 1.227
11 H -0.160 1.160
12 N -0.322 5.322
13 C -0.045 4.045
14 C 0.303 3.697
15 O -0.464 6.464
16 C -0.046 4.046
17 H 0.114 0.886
18 C -0.195 4.195
19 C -0.184 4.184
20 C -0.045 4.045
21 N -0.173 5.173
22 C -0.066 4.066
23 C -0.029 4.029
24 C -0.153 4.153
25 C -0.123 4.123
26 C -0.169 4.169
27 C -0.112 4.112
28 C -0.130 4.130
29 H 0.078 0.922
30 H 0.077 0.923
31 H 0.067 0.933
32 H 0.076 0.924
33 H 0.057 0.943
34 H 0.092 0.908
35 H 0.088 0.912
36 H 0.074 0.926
37 H 0.098 0.902
38 H 0.083 0.917
39 H 0.184 0.816
40 H 0.101 0.899
41 H 0.109 0.891
42 H 0.113 0.887
43 H 0.160 0.840
44 H 0.172 0.828
45 H 0.161 0.839
46 H 0.138 0.862
Dipole moment (debyes) X Y Z Total
from point charges 2.850 12.028 -18.907 22.590
hybrid contribution -0.345 -0.260 1.039 1.126
sum 2.505 11.768 -17.868 21.542
Atomic orbital electron populations
1.22445 0.97481 1.02051 1.00299 1.19382 0.91558 0.94117 0.82492
0.91763 1.21251 1.31672 1.13229 0.90006 0.94163 1.25643 0.96862
0.99599 0.95136 1.70018 1.47050 1.42240 0.98702 0.86087 0.79416
0.80401 0.78087 1.19088 1.22652 1.16011 1.47913 1.54113 1.09669
1.20544 1.21386 1.01209 0.80822 1.01035 1.20911 0.76937 0.89667
0.82176 1.90554 1.55666 1.71768 1.28446 1.19426 1.00351 0.90998
0.93797 0.88572 1.21821 0.97323 1.03117 0.97226 1.19678 0.99248
1.00546 0.98949 1.21555 0.99155 0.96172 0.87616 1.43985 1.24159
1.27521 1.21655 1.22186 0.88556 1.04468 0.91403 1.18580 0.91291
0.94837 0.98150 1.20326 1.00219 0.95447 0.99313 1.21170 0.93810
0.99393 0.97893 1.20918 1.01569 0.99030 0.95334 1.20496 0.95518
0.95143 1.00090 1.19340 0.98279 0.98781 0.96623 0.92184 0.92275
0.93298 0.92361 0.94340 0.90791 0.91202 0.92554 0.90236 0.91730
0.81644 0.89864 0.89136 0.88677 0.84019 0.82789 0.83924 0.86232
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -6.38 8.74 71.98 0.63 -5.75 16
2 C 0.23 9.78 1.35 44.24 0.06 9.84 16
3 H 0.06 2.69 3.51 -2.39 -0.01 2.69 16
4 C -0.52 -27.34 8.59 25.60 0.22 -27.12 16
5 H 0.04 2.39 7.43 -2.92 -0.02 2.37 16
6 C 0.03 1.42 5.45 84.66 0.46 1.88 16
7 N -0.94 -55.38 13.96 21.45 0.30 -55.08 16
8 Si 0.93 40.65 24.37 68.60 1.67 42.32 16
9 H -0.26 -11.02 6.87 99.48 0.68 -10.34 16
10 H -0.30 -13.23 7.11 99.48 0.71 -12.52 16
11 H -0.24 -9.20 6.53 99.48 0.65 -8.55 16
12 N -0.59 -24.55 2.75 -826.79 -2.28 -26.83 16
13 C 0.10 3.82 9.62 127.77 1.23 5.05 16
14 C 0.51 20.85 6.91 87.66 0.61 21.45 16
15 O -0.58 -25.61 14.73 -3.04 -0.04 -25.66 16
16 C -0.02 -0.85 2.25 -12.29 -0.03 -0.88 16
17 H 0.10 3.32 7.12 -2.39 -0.02 3.30 16
18 C -0.14 -4.67 8.69 71.98 0.63 -4.05 16
19 C -0.18 -5.95 4.74 -18.63 -0.09 -6.04 16
20 C 0.08 2.49 9.78 83.00 0.81 3.30 16
21 N -0.49 -12.62 3.18 -539.27 -1.71 -14.33 16
22 C 0.07 1.14 11.03 127.77 1.41 2.55 16
23 C 0.08 2.13 6.81 39.03 0.27 2.39 16
24 C -0.13 -2.81 9.97 22.37 0.22 -2.59 16
25 C -0.10 -1.98 10.01 22.30 0.22 -1.76 16
26 C -0.15 -3.26 9.97 22.04 0.22 -3.04 16
27 C -0.09 -2.60 10.05 22.23 0.22 -2.37 16
28 C -0.13 -3.95 6.35 -20.20 -0.13 -4.08 16
29 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16
30 H 0.06 2.26 6.90 -2.39 -0.02 2.24 16
31 H 0.05 1.91 3.27 -2.39 -0.01 1.90 16
32 H 0.27 14.81 8.31 -92.71 -0.77 14.04 16
33 H 0.04 1.56 7.81 -2.39 -0.02 1.54 16
34 H 0.07 2.69 6.75 -2.39 -0.02 2.68 16
35 H 0.07 2.58 7.23 -2.38 -0.02 2.56 16
36 H 0.06 1.85 8.05 -2.39 -0.02 1.83 16
37 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16
38 H 0.06 2.51 5.88 -2.38 -0.01 2.50 16
39 H 0.17 4.86 8.06 -2.91 -0.02 4.84 16
40 H 0.08 1.01 8.14 -2.38 -0.02 0.99 16
41 H 0.09 1.24 8.14 -2.38 -0.02 1.22 16
42 H 0.09 1.12 8.10 -2.39 -0.02 1.10 16
43 H 0.14 2.12 8.06 -2.91 -0.02 2.10 16
44 H 0.15 1.86 8.06 -2.91 -0.02 1.83 16
45 H 0.14 2.32 8.06 -2.91 -0.02 2.30 16
46 H 0.12 3.14 8.06 -2.91 -0.02 3.11 16
Total: -1.00 -68.50 363.01 5.80 -62.71
By element:
Atomic # 1 Polarization: 27.18 SS G_CDS: 0.90 Total: 28.08 kcal
Atomic # 6 Polarization: -18.17 SS G_CDS: 6.96 Total: -11.21 kcal
Atomic # 7 Polarization: -92.54 SS G_CDS: -3.69 Total: -96.24 kcal
Atomic # 8 Polarization: -25.61 SS G_CDS: -0.04 Total: -25.66 kcal
Atomic # 14 Polarization: 40.65 SS G_CDS: 1.67 Total: 42.32 kcal
Total: -68.50 5.80 -62.71 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000185315561.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 82.169 kcal
(2) G-P(sol) polarization free energy of solvation -68.503 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.666 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.795 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.708 kcal
(6) G-S(sol) free energy of system = (1) + (5) 19.462 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.75 seconds