Wall clock time and date at job start Tue Mar 31 2020 11:00:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.47227 * 2 1 4 4 C 1.50696 * 109.47424 * 120.00695 * 2 1 3 5 5 H 1.07991 * 120.00754 * 119.99652 * 4 2 1 6 6 C 1.37881 * 119.99676 * 300.00174 * 4 2 1 7 7 N 1.31514 * 120.00035 * 180.02562 * 6 4 2 8 8 Si 1.86806 * 119.99976 * 359.97438 * 6 4 2 9 9 H 1.48501 * 109.46624 * 90.00444 * 8 6 4 10 10 H 1.48497 * 109.47111 * 210.00308 * 8 6 4 11 11 H 1.48496 * 109.47019 * 330.00830 * 8 6 4 12 12 N 1.46504 * 109.47079 * 240.00305 * 2 1 3 13 13 C 1.46496 * 119.99954 * 294.19927 * 12 2 1 14 14 C 1.34780 * 120.00153 * 114.19332 * 12 2 1 15 15 O 1.21282 * 120.00094 * 184.16173 * 14 12 2 16 16 C 1.50703 * 119.99859 * 4.16658 * 14 12 2 17 17 H 1.09001 * 109.46944 * 310.56921 * 16 14 12 18 18 C 1.53002 * 109.46980 * 70.56774 * 16 14 12 19 19 C 1.50697 * 109.47038 * 190.56776 * 16 14 12 20 20 C 1.34240 * 126.50156 * 299.97274 * 19 16 14 21 21 N 1.36832 * 109.93138 * 180.02562 * 20 19 16 22 22 C 1.46490 * 125.06641 * 180.02562 * 21 20 19 23 23 C 1.37694 * 109.87030 * 0.02562 * 21 20 19 24 24 C 1.39126 * 133.50311 * 179.97438 * 23 21 20 25 25 C 1.37755 * 119.77473 * 179.77064 * 24 23 21 26 26 C 1.38828 * 120.66665 * 0.51595 * 25 24 23 27 27 C 1.36631 * 120.52639 * 359.48248 * 26 25 24 28 28 C 1.39622 * 119.76541 * 0.25519 * 27 26 25 29 29 H 1.09002 * 109.46981 * 59.99411 * 1 2 3 30 30 H 1.08998 * 109.47031 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46611 * 299.99899 * 1 2 3 32 32 H 0.97001 * 119.99677 * 179.97438 * 7 6 4 33 33 H 1.09000 * 109.47116 * 275.08741 * 13 12 2 34 34 H 1.09002 * 109.47231 * 35.09161 * 13 12 2 35 35 H 1.09004 * 109.47071 * 155.09258 * 13 12 2 36 36 H 1.08990 * 109.47217 * 58.58798 * 18 16 14 37 37 H 1.09003 * 109.47117 * 178.59324 * 18 16 14 38 38 H 1.09004 * 109.46808 * 298.58473 * 18 16 14 39 39 H 1.08002 * 125.03493 * 0.02562 * 20 19 16 40 40 H 1.09005 * 109.47200 * 269.96187 * 22 21 20 41 41 H 1.09007 * 109.47281 * 29.95254 * 22 21 20 42 42 H 1.09001 * 109.47639 * 149.95907 * 22 21 20 43 43 H 1.07997 * 120.11395 * 0.05380 * 24 23 21 44 44 H 1.07995 * 119.66347 * 180.25597 * 25 24 23 45 45 H 1.07997 * 119.74054 * 179.76355 * 26 25 24 46 46 H 1.08000 * 120.11764 * 180.28069 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1312 6 6 1.6993 -0.2396 2.4827 7 7 2.1381 -0.8593 3.5564 8 14 0.6258 1.2796 2.6542 9 1 -0.8020 0.8741 2.6994 10 1 0.9771 1.9951 3.9071 11 1 0.8489 2.1771 1.4923 12 7 2.0183 -0.6906 -1.1962 13 6 1.7722 -2.1247 -1.3659 14 6 2.6940 -0.0064 -2.1407 15 8 3.0324 -0.5603 -3.1652 16 6 3.0290 1.4468 -1.9237 17 1 2.1336 1.9829 -1.6090 18 6 4.1024 1.5664 -0.8400 19 6 3.5445 2.0408 -3.2091 20 6 4.6276 1.6425 -3.8950 21 7 4.7837 2.4177 -5.0116 22 6 5.8588 2.2694 -5.9956 23 6 3.7796 3.3580 -5.0728 24 6 3.4699 4.3711 -5.9745 25 6 2.3655 5.1655 -5.7581 26 6 1.5624 4.9729 -4.6421 27 6 1.8483 3.9839 -3.7438 28 6 2.9597 3.1635 -3.9464 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3632 0.5138 0.8900 32 1 1.9040 -0.5277 4.4374 33 1 2.5475 -2.6901 -0.8488 34 1 0.7978 -2.3781 -0.9480 35 1 1.7881 -2.3730 -2.4272 36 1 4.9887 1.0093 -1.1435 37 1 4.3627 2.6156 -0.7006 38 1 3.7203 1.1594 0.0963 39 1 5.2792 0.8304 -3.6079 40 1 6.7067 2.8890 -5.7034 41 1 6.1698 1.2255 -6.0395 42 1 5.5002 2.5833 -6.9759 43 1 4.0905 4.5313 -6.8437 44 1 2.1243 5.9488 -6.4614 45 1 0.7023 5.6069 -4.4851 46 1 1.2165 3.8369 -2.8803 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000185315561.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:34 Heat of formation + Delta-G solvation = 19.461705 kcal Electronic energy + Delta-G solvation = -26834.546993 eV Core-core repulsion = 23303.501336 eV Total energy + Delta-G solvation = -3531.045657 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.35151 -40.84982 -37.92883 -37.42260 -35.54623 -34.51450 -32.53266 -31.87047 -31.16817 -29.58001 -28.00875 -27.26375 -26.98476 -24.81889 -23.53684 -23.16011 -22.29298 -20.98287 -19.37272 -18.95019 -17.96736 -17.75001 -17.16104 -16.90346 -16.48090 -16.28602 -16.16160 -15.71241 -15.10566 -14.90360 -14.77990 -14.66380 -14.47774 -14.11327 -14.04492 -13.74033 -13.60405 -13.53815 -13.38402 -13.13266 -13.01313 -12.91470 -12.70582 -12.43123 -12.37606 -12.09563 -12.04958 -11.95711 -11.63553 -11.48030 -11.32098 -10.78449 -10.58775 -10.37825 -9.40014 -9.03823 -8.43849 -8.27913 -6.34089 0.26091 0.75602 1.35950 1.41438 1.50463 1.68416 1.75792 1.96829 2.33286 2.39354 3.03667 3.06964 3.65587 3.78229 3.88185 3.92124 4.11373 4.26825 4.29308 4.34266 4.35382 4.42810 4.46247 4.57757 4.59966 4.64229 4.66258 4.70612 4.75114 4.78843 4.84042 4.90927 4.94040 4.97643 4.99715 5.07787 5.25280 5.29245 5.37807 5.50658 5.61990 5.75258 5.79918 5.87798 5.94362 6.16306 6.31720 6.47860 6.70038 6.75329 7.25757 7.38113 8.88172 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.016863 B = 0.004180 C = 0.003769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.051907 B = 6696.677196 C = 7428.226618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.227 3.773 3 H 0.065 0.935 4 C -0.523 4.523 5 H 0.040 0.960 6 C 0.027 3.973 7 N -0.941 5.941 8 Si 0.934 3.066 9 H -0.265 1.265 10 H -0.299 1.299 11 H -0.237 1.237 12 N -0.593 5.593 13 C 0.098 3.902 14 C 0.514 3.486 15 O -0.583 6.583 16 C -0.024 4.024 17 H 0.096 0.904 18 C -0.137 4.137 19 C -0.177 4.177 20 C 0.081 3.919 21 N -0.490 5.490 22 C 0.074 3.926 23 C 0.077 3.923 24 C -0.133 4.133 25 C -0.104 4.104 26 C -0.150 4.150 27 C -0.094 4.094 28 C -0.126 4.126 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.049 0.951 32 H 0.267 0.733 33 H 0.038 0.962 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.055 0.945 37 H 0.079 0.921 38 H 0.064 0.936 39 H 0.166 0.834 40 H 0.083 0.917 41 H 0.090 0.910 42 H 0.095 0.905 43 H 0.142 0.858 44 H 0.154 0.846 45 H 0.143 0.857 46 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.386 12.417 -18.334 22.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.125 3.875 3 H 0.082 0.918 4 C -0.562 4.562 5 H 0.058 0.942 6 C -0.172 4.172 7 N -0.580 5.580 8 Si 0.760 3.240 9 H -0.191 1.191 10 H -0.227 1.227 11 H -0.160 1.160 12 N -0.322 5.322 13 C -0.045 4.045 14 C 0.303 3.697 15 O -0.464 6.464 16 C -0.046 4.046 17 H 0.114 0.886 18 C -0.195 4.195 19 C -0.184 4.184 20 C -0.045 4.045 21 N -0.173 5.173 22 C -0.066 4.066 23 C -0.029 4.029 24 C -0.153 4.153 25 C -0.123 4.123 26 C -0.169 4.169 27 C -0.112 4.112 28 C -0.130 4.130 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.067 0.933 32 H 0.076 0.924 33 H 0.057 0.943 34 H 0.092 0.908 35 H 0.088 0.912 36 H 0.074 0.926 37 H 0.098 0.902 38 H 0.083 0.917 39 H 0.184 0.816 40 H 0.101 0.899 41 H 0.109 0.891 42 H 0.113 0.887 43 H 0.160 0.840 44 H 0.172 0.828 45 H 0.161 0.839 46 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 2.850 12.028 -18.907 22.590 hybrid contribution -0.345 -0.260 1.039 1.126 sum 2.505 11.768 -17.868 21.542 Atomic orbital electron populations 1.22445 0.97481 1.02051 1.00299 1.19382 0.91558 0.94117 0.82492 0.91763 1.21251 1.31672 1.13229 0.90006 0.94163 1.25643 0.96862 0.99599 0.95136 1.70018 1.47050 1.42240 0.98702 0.86087 0.79416 0.80401 0.78087 1.19088 1.22652 1.16011 1.47913 1.54113 1.09669 1.20544 1.21386 1.01209 0.80822 1.01035 1.20911 0.76937 0.89667 0.82176 1.90554 1.55666 1.71768 1.28446 1.19426 1.00351 0.90998 0.93797 0.88572 1.21821 0.97323 1.03117 0.97226 1.19678 0.99248 1.00546 0.98949 1.21555 0.99155 0.96172 0.87616 1.43985 1.24159 1.27521 1.21655 1.22186 0.88556 1.04468 0.91403 1.18580 0.91291 0.94837 0.98150 1.20326 1.00219 0.95447 0.99313 1.21170 0.93810 0.99393 0.97893 1.20918 1.01569 0.99030 0.95334 1.20496 0.95518 0.95143 1.00090 1.19340 0.98279 0.98781 0.96623 0.92184 0.92275 0.93298 0.92361 0.94340 0.90791 0.91202 0.92554 0.90236 0.91730 0.81644 0.89864 0.89136 0.88677 0.84019 0.82789 0.83924 0.86232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.38 8.74 71.98 0.63 -5.75 16 2 C 0.23 9.78 1.35 44.24 0.06 9.84 16 3 H 0.06 2.69 3.51 -2.39 -0.01 2.69 16 4 C -0.52 -27.34 8.59 25.60 0.22 -27.12 16 5 H 0.04 2.39 7.43 -2.92 -0.02 2.37 16 6 C 0.03 1.42 5.45 84.66 0.46 1.88 16 7 N -0.94 -55.38 13.96 21.45 0.30 -55.08 16 8 Si 0.93 40.65 24.37 68.60 1.67 42.32 16 9 H -0.26 -11.02 6.87 99.48 0.68 -10.34 16 10 H -0.30 -13.23 7.11 99.48 0.71 -12.52 16 11 H -0.24 -9.20 6.53 99.48 0.65 -8.55 16 12 N -0.59 -24.55 2.75 -826.79 -2.28 -26.83 16 13 C 0.10 3.82 9.62 127.77 1.23 5.05 16 14 C 0.51 20.85 6.91 87.66 0.61 21.45 16 15 O -0.58 -25.61 14.73 -3.04 -0.04 -25.66 16 16 C -0.02 -0.85 2.25 -12.29 -0.03 -0.88 16 17 H 0.10 3.32 7.12 -2.39 -0.02 3.30 16 18 C -0.14 -4.67 8.69 71.98 0.63 -4.05 16 19 C -0.18 -5.95 4.74 -18.63 -0.09 -6.04 16 20 C 0.08 2.49 9.78 83.00 0.81 3.30 16 21 N -0.49 -12.62 3.18 -539.27 -1.71 -14.33 16 22 C 0.07 1.14 11.03 127.77 1.41 2.55 16 23 C 0.08 2.13 6.81 39.03 0.27 2.39 16 24 C -0.13 -2.81 9.97 22.37 0.22 -2.59 16 25 C -0.10 -1.98 10.01 22.30 0.22 -1.76 16 26 C -0.15 -3.26 9.97 22.04 0.22 -3.04 16 27 C -0.09 -2.60 10.05 22.23 0.22 -2.37 16 28 C -0.13 -3.95 6.35 -20.20 -0.13 -4.08 16 29 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 30 H 0.06 2.26 6.90 -2.39 -0.02 2.24 16 31 H 0.05 1.91 3.27 -2.39 -0.01 1.90 16 32 H 0.27 14.81 8.31 -92.71 -0.77 14.04 16 33 H 0.04 1.56 7.81 -2.39 -0.02 1.54 16 34 H 0.07 2.69 6.75 -2.39 -0.02 2.68 16 35 H 0.07 2.58 7.23 -2.38 -0.02 2.56 16 36 H 0.06 1.85 8.05 -2.39 -0.02 1.83 16 37 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 38 H 0.06 2.51 5.88 -2.38 -0.01 2.50 16 39 H 0.17 4.86 8.06 -2.91 -0.02 4.84 16 40 H 0.08 1.01 8.14 -2.38 -0.02 0.99 16 41 H 0.09 1.24 8.14 -2.38 -0.02 1.22 16 42 H 0.09 1.12 8.10 -2.39 -0.02 1.10 16 43 H 0.14 2.12 8.06 -2.91 -0.02 2.10 16 44 H 0.15 1.86 8.06 -2.91 -0.02 1.83 16 45 H 0.14 2.32 8.06 -2.91 -0.02 2.30 16 46 H 0.12 3.14 8.06 -2.91 -0.02 3.11 16 Total: -1.00 -68.50 363.01 5.80 -62.71 By element: Atomic # 1 Polarization: 27.18 SS G_CDS: 0.90 Total: 28.08 kcal Atomic # 6 Polarization: -18.17 SS G_CDS: 6.96 Total: -11.21 kcal Atomic # 7 Polarization: -92.54 SS G_CDS: -3.69 Total: -96.24 kcal Atomic # 8 Polarization: -25.61 SS G_CDS: -0.04 Total: -25.66 kcal Atomic # 14 Polarization: 40.65 SS G_CDS: 1.67 Total: 42.32 kcal Total: -68.50 5.80 -62.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185315561.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.169 kcal (2) G-P(sol) polarization free energy of solvation -68.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.708 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds