Wall clock time and date at job start Tue Mar 31 2020 10:43:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.46910 * 2 1 4 4 C 1.50698 * 109.47347 * 119.99728 * 2 1 3 5 5 O 1.21276 * 120.00126 * 120.00089 * 4 2 1 6 6 N 1.34780 * 119.99875 * 300.00723 * 4 2 1 7 7 C 1.46497 * 119.99610 * 180.02562 * 6 4 2 8 8 C 1.52999 * 109.46980 * 179.97438 * 7 6 4 9 9 C 1.52997 * 109.47271 * 179.97438 * 8 7 6 10 10 C 1.50704 * 109.47345 * 180.02562 * 9 8 7 11 11 H 1.08002 * 119.99818 * 359.97438 * 10 9 8 12 12 C 1.37873 * 120.00113 * 180.02562 * 10 9 8 13 13 N 1.31518 * 120.00049 * 359.97438 * 12 10 9 14 14 Si 1.86804 * 120.00084 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.46780 * 59.99996 * 14 12 10 16 16 H 1.48505 * 109.47209 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.47055 * 299.99956 * 14 12 10 18 18 C 1.50695 * 109.47423 * 240.00374 * 2 1 3 19 19 C 1.34241 * 126.49588 * 299.97496 * 18 2 1 20 20 N 1.36833 * 109.93022 * 180.02562 * 19 18 2 21 21 C 1.46497 * 125.06377 * 179.97438 * 20 19 18 22 22 C 1.37688 * 109.87243 * 0.02562 * 20 19 18 23 23 C 1.39129 * 133.50461 * 179.71370 * 22 20 19 24 24 C 1.37747 * 119.77762 * 179.91587 * 23 22 20 25 25 C 1.38834 * 120.66433 * 0.37593 * 24 23 22 26 26 C 1.36628 * 120.53209 * 359.83415 * 25 24 23 27 27 C 1.39629 * 119.76327 * 359.97438 * 26 25 24 28 28 H 1.08999 * 109.47361 * 299.99778 * 1 2 3 29 29 H 1.09001 * 109.47310 * 59.99931 * 1 2 3 30 30 H 1.09002 * 109.46910 * 179.97438 * 1 2 3 31 31 H 0.96998 * 120.00506 * 359.97438 * 6 4 2 32 32 H 1.09002 * 109.46896 * 299.99345 * 7 6 4 33 33 H 1.08999 * 109.47809 * 59.99435 * 7 6 4 34 34 H 1.09002 * 109.46975 * 299.99547 * 8 7 6 35 35 H 1.09005 * 109.47206 * 59.99707 * 8 7 6 36 36 H 1.09002 * 109.47051 * 299.99868 * 9 8 7 37 37 H 1.08999 * 109.47364 * 59.99779 * 9 8 7 38 38 H 0.96996 * 120.00126 * 179.97438 * 13 12 10 39 39 H 1.08002 * 125.03847 * 0.02562 * 19 18 2 40 40 H 1.08997 * 109.47680 * 270.02452 * 21 20 19 41 41 H 1.09002 * 109.47387 * 30.02992 * 21 20 19 42 42 H 1.09007 * 109.46781 * 150.02391 * 21 20 19 43 43 H 1.08001 * 120.10753 * 0.28870 * 23 22 20 44 44 H 1.07998 * 119.66462 * 180.16293 * 24 23 22 45 45 H 1.07999 * 119.73036 * 179.80369 * 25 24 23 46 46 H 1.07997 * 120.11684 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 8 2.7296 -1.6964 1.1192 6 7 1.7067 -0.2499 2.4546 7 6 2.1955 -0.9401 3.6507 8 6 1.6859 -0.2186 4.8999 9 6 2.1959 -0.9398 6.1492 10 6 1.6933 -0.2296 7.3797 11 1 1.0726 0.6487 7.2806 12 6 2.0268 -0.7003 8.6319 13 7 2.7831 -1.7695 8.7526 14 14 1.4045 0.1805 10.1572 15 1 -0.0805 0.1803 10.1575 16 1 1.8994 -0.5196 11.3697 17 1 1.8993 1.5806 10.1567 18 6 2.0324 -0.7103 -1.2304 19 6 1.7902 -1.9861 -1.5707 20 7 2.4117 -2.2793 -2.7540 21 6 2.3668 -3.5788 -3.4288 22 6 3.0865 -1.1713 -3.2153 23 6 3.8686 -0.9254 -4.3394 24 6 4.4216 0.3219 -4.5285 25 6 4.2132 1.3364 -3.6040 26 6 3.4522 1.1156 -2.4910 27 6 2.8787 -0.1401 -2.2813 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.1492 0.5389 2.5436 32 1 1.8326 -1.9679 3.6509 33 1 3.2855 -0.9397 3.6506 34 1 2.0491 0.8091 4.8996 35 1 0.5958 -0.2188 4.9003 36 1 1.8323 -1.9674 6.1493 37 1 3.2858 -0.9401 6.1490 38 1 3.0180 -2.1005 9.6336 39 1 1.1933 -2.6786 -0.9957 40 1 3.1946 -4.1972 -3.0818 41 1 1.4229 -4.0741 -3.2011 42 1 2.4495 -3.4319 -4.5057 43 1 4.0365 -1.7082 -5.0643 44 1 5.0262 0.5115 -5.4031 45 1 4.6566 2.3078 -3.7657 46 1 3.2948 1.9095 -1.7759 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000185318820.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:43:31 Heat of formation + Delta-G solvation = 3.074542 kcal Electronic energy + Delta-G solvation = -24938.732573 eV Core-core repulsion = 21406.976316 eV Total energy + Delta-G solvation = -3531.756257 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.54605 -39.45057 -37.18140 -35.43306 -34.60295 -33.28949 -31.90291 -30.85670 -30.47022 -28.76881 -26.77086 -26.40532 -24.37657 -22.98019 -22.64705 -21.56367 -20.71582 -20.38514 -18.98845 -17.12326 -17.03007 -16.37323 -16.20867 -15.61159 -15.46705 -15.36593 -15.15494 -14.45766 -14.24582 -14.13006 -13.93036 -13.55985 -13.50027 -13.09494 -12.89796 -12.76807 -12.40583 -12.25882 -12.11305 -11.85189 -11.67802 -11.66074 -11.36443 -11.23997 -10.91524 -10.87147 -10.70130 -10.61218 -9.84305 -9.76577 -9.64741 -9.28156 -9.09896 -8.69406 -8.36260 -8.25734 -7.65852 -6.00966 -4.04142 1.02937 1.51689 2.53010 2.67498 2.90206 3.32492 3.37171 3.38930 3.54803 3.83321 4.43981 4.44923 4.53702 4.62060 4.75702 4.87825 4.89748 4.99767 5.01129 5.12203 5.15691 5.25889 5.34604 5.36874 5.49536 5.54786 5.65799 5.71785 5.76532 5.81287 5.82700 5.94965 6.09469 6.19619 6.35834 6.49536 6.54986 6.62801 6.62885 6.72189 6.87999 7.03200 7.09523 7.18748 7.64330 7.77429 7.81079 7.97842 8.38647 8.51107 9.02416 9.59912 11.10290 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.025666 B = 0.002139 C = 0.002090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.672929 B =13088.233125 C =13395.264327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.034 4.034 3 H 0.100 0.900 4 C 0.511 3.489 5 O -0.538 6.538 6 N -0.727 5.727 7 C 0.117 3.883 8 C -0.120 4.120 9 C 0.024 3.976 10 C -0.522 4.522 11 H 0.055 0.945 12 C 0.056 3.944 13 N -0.894 5.894 14 Si 0.893 3.107 15 H -0.277 1.277 16 H -0.287 1.287 17 H -0.277 1.277 18 C -0.155 4.155 19 C 0.087 3.913 20 N -0.488 5.488 21 C 0.080 3.920 22 C 0.095 3.905 23 C -0.129 4.129 24 C -0.104 4.104 25 C -0.149 4.149 26 C -0.071 4.071 27 C -0.094 4.094 28 H 0.064 0.936 29 H 0.067 0.933 30 H 0.059 0.941 31 H 0.397 0.603 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.054 0.946 35 H 0.054 0.946 36 H 0.018 0.982 37 H 0.018 0.982 38 H 0.262 0.738 39 H 0.165 0.835 40 H 0.069 0.931 41 H 0.082 0.918 42 H 0.078 0.922 43 H 0.116 0.884 44 H 0.122 0.878 45 H 0.120 0.880 46 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.802 2.667 -29.100 29.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.056 4.056 3 H 0.118 0.882 4 C 0.296 3.704 5 O -0.414 6.414 6 N -0.378 5.378 7 C -0.005 4.005 8 C -0.158 4.158 9 C -0.014 4.014 10 C -0.561 4.561 11 H 0.073 0.927 12 C -0.145 4.145 13 N -0.533 5.533 14 Si 0.721 3.279 15 H -0.202 1.202 16 H -0.213 1.213 17 H -0.202 1.202 18 C -0.162 4.162 19 C -0.038 4.038 20 N -0.171 5.171 21 C -0.062 4.062 22 C -0.010 4.010 23 C -0.150 4.150 24 C -0.124 4.124 25 C -0.168 4.168 26 C -0.090 4.090 27 C -0.099 4.099 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.078 0.922 31 H 0.231 0.769 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.037 0.963 37 H 0.037 0.963 38 H 0.071 0.929 39 H 0.182 0.818 40 H 0.087 0.913 41 H 0.101 0.899 42 H 0.097 0.903 43 H 0.134 0.866 44 H 0.140 0.860 45 H 0.138 0.862 46 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -2.237 1.470 -29.169 29.292 hybrid contribution -0.459 0.638 1.036 1.300 sum -2.696 2.108 -28.133 28.340 Atomic orbital electron populations 1.21790 0.92471 1.02741 1.02639 1.19558 0.96738 0.99750 0.89526 0.88160 1.20572 0.80427 0.84879 0.84550 1.90689 1.37566 1.26395 1.86757 1.46207 1.53504 1.32074 1.06011 1.21609 0.99180 0.96443 0.83316 1.21881 1.00140 0.99502 0.94320 1.19025 0.96652 0.95657 0.90045 1.21172 1.31652 1.12315 0.90940 0.92691 1.25036 0.95185 0.95076 0.99201 1.69956 1.36715 1.22976 1.23670 0.86640 0.79152 0.79757 0.82327 1.20249 1.21289 1.20231 1.19479 1.05783 0.94157 0.96824 1.21466 0.99059 0.96441 0.86880 1.43748 1.43601 1.09815 1.19955 1.21917 1.03481 0.82875 0.97881 1.18224 0.98840 0.86953 0.97006 1.19970 1.00612 0.98007 0.96405 1.20751 0.99887 0.92364 0.99368 1.20587 1.01498 0.99364 0.95388 1.20258 0.96452 0.94999 0.97274 1.19035 1.01499 0.93860 0.95504 0.91733 0.91417 0.92182 0.76896 0.91946 0.91944 0.92749 0.92757 0.96335 0.96315 0.92880 0.81803 0.91258 0.89914 0.90307 0.86646 0.86030 0.86199 0.86219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.22 8.97 37.16 0.33 -0.89 16 2 C -0.03 -0.38 3.12 -92.93 -0.29 -0.67 16 3 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16 4 C 0.51 7.61 7.10 -10.98 -0.08 7.54 16 5 O -0.54 -10.21 15.37 5.56 0.09 -10.12 16 6 N -0.73 -10.40 5.45 -60.30 -0.33 -10.73 16 7 C 0.12 2.09 5.67 -4.04 -0.02 2.06 16 8 C -0.12 -2.36 5.27 -26.73 -0.14 -2.50 16 9 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 10 C -0.52 -14.63 9.11 -34.44 -0.31 -14.94 16 11 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 12 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 13 N -0.89 -26.95 13.29 55.43 0.74 -26.21 16 14 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 15 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 16 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 17 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 18 C -0.16 -1.98 4.63 -102.72 -0.48 -2.45 16 19 C 0.09 1.05 9.96 -16.73 -0.17 0.88 16 20 N -0.49 -5.39 3.18 -121.80 -0.39 -5.77 16 21 C 0.08 0.55 11.03 59.85 0.66 1.21 16 22 C 0.10 1.15 6.81 -83.98 -0.57 0.58 16 23 C -0.13 -1.31 9.97 -39.43 -0.39 -1.70 16 24 C -0.10 -0.97 10.01 -39.54 -0.40 -1.37 16 25 C -0.15 -1.45 9.97 -39.94 -0.40 -1.85 16 26 C -0.07 -0.80 10.05 -39.64 -0.40 -1.20 16 27 C -0.09 -1.21 6.35 -105.14 -0.67 -1.88 16 28 H 0.06 0.49 7.56 -51.93 -0.39 0.10 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.54 8.02 -51.93 -0.42 0.13 16 31 H 0.40 4.54 7.89 -40.82 -0.32 4.21 16 32 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 35 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 39 H 0.16 1.78 8.06 -52.49 -0.42 1.36 16 40 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 42 H 0.08 0.41 8.11 -51.93 -0.42 -0.01 16 43 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 44 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 45 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 46 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 LS Contribution 385.92 15.07 5.82 5.82 Total: -1.00 -34.72 385.92 -10.09 -44.81 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: -7.44 Total: 0.89 kcal Atomic # 6 Polarization: -11.63 SS G_CDS: -3.56 Total: -15.18 kcal Atomic # 7 Polarization: -42.74 SS G_CDS: 0.02 Total: -42.72 kcal Atomic # 8 Polarization: -10.21 SS G_CDS: 0.09 Total: -10.12 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -34.72 -10.09 -44.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185318820.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.885 kcal (2) G-P(sol) polarization free energy of solvation -34.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.810 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds