Wall clock time and date at job start Tue Mar 31 2020 10:43:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.46910 * 2 1 4 4 C 1.50698 * 109.47347 * 119.99728 * 2 1 3 5 5 O 1.21276 * 120.00126 * 120.00089 * 4 2 1 6 6 N 1.34780 * 119.99875 * 300.00723 * 4 2 1 7 7 C 1.46497 * 119.99610 * 180.02562 * 6 4 2 8 8 C 1.52999 * 109.46980 * 179.97438 * 7 6 4 9 9 C 1.52997 * 109.47271 * 179.97438 * 8 7 6 10 10 C 1.50704 * 109.47345 * 180.02562 * 9 8 7 11 11 H 1.08002 * 119.99818 * 359.97438 * 10 9 8 12 12 C 1.37873 * 120.00113 * 180.02562 * 10 9 8 13 13 N 1.31518 * 120.00049 * 359.97438 * 12 10 9 14 14 Si 1.86804 * 120.00084 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.46780 * 59.99996 * 14 12 10 16 16 H 1.48505 * 109.47209 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.47055 * 299.99956 * 14 12 10 18 18 C 1.50695 * 109.47423 * 240.00374 * 2 1 3 19 19 C 1.34241 * 126.49588 * 299.97496 * 18 2 1 20 20 N 1.36833 * 109.93022 * 180.02562 * 19 18 2 21 21 C 1.46497 * 125.06377 * 179.97438 * 20 19 18 22 22 C 1.37688 * 109.87243 * 0.02562 * 20 19 18 23 23 C 1.39129 * 133.50461 * 179.71370 * 22 20 19 24 24 C 1.37747 * 119.77762 * 179.91587 * 23 22 20 25 25 C 1.38834 * 120.66433 * 0.37593 * 24 23 22 26 26 C 1.36628 * 120.53209 * 359.83415 * 25 24 23 27 27 C 1.39629 * 119.76327 * 359.97438 * 26 25 24 28 28 H 1.08999 * 109.47361 * 299.99778 * 1 2 3 29 29 H 1.09001 * 109.47310 * 59.99931 * 1 2 3 30 30 H 1.09002 * 109.46910 * 179.97438 * 1 2 3 31 31 H 0.96998 * 120.00506 * 359.97438 * 6 4 2 32 32 H 1.09002 * 109.46896 * 299.99345 * 7 6 4 33 33 H 1.08999 * 109.47809 * 59.99435 * 7 6 4 34 34 H 1.09002 * 109.46975 * 299.99547 * 8 7 6 35 35 H 1.09005 * 109.47206 * 59.99707 * 8 7 6 36 36 H 1.09002 * 109.47051 * 299.99868 * 9 8 7 37 37 H 1.08999 * 109.47364 * 59.99779 * 9 8 7 38 38 H 0.96996 * 120.00126 * 179.97438 * 13 12 10 39 39 H 1.08002 * 125.03847 * 0.02562 * 19 18 2 40 40 H 1.08997 * 109.47680 * 270.02452 * 21 20 19 41 41 H 1.09002 * 109.47387 * 30.02992 * 21 20 19 42 42 H 1.09007 * 109.46781 * 150.02391 * 21 20 19 43 43 H 1.08001 * 120.10753 * 0.28870 * 23 22 20 44 44 H 1.07998 * 119.66462 * 180.16293 * 24 23 22 45 45 H 1.07999 * 119.73036 * 179.80369 * 25 24 23 46 46 H 1.07997 * 120.11684 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 8 2.7296 -1.6964 1.1192 6 7 1.7067 -0.2499 2.4546 7 6 2.1955 -0.9401 3.6507 8 6 1.6859 -0.2186 4.8999 9 6 2.1959 -0.9398 6.1492 10 6 1.6933 -0.2296 7.3797 11 1 1.0726 0.6487 7.2806 12 6 2.0268 -0.7003 8.6319 13 7 2.7831 -1.7695 8.7526 14 14 1.4045 0.1805 10.1572 15 1 -0.0805 0.1803 10.1575 16 1 1.8994 -0.5196 11.3697 17 1 1.8993 1.5806 10.1567 18 6 2.0324 -0.7103 -1.2304 19 6 1.7902 -1.9861 -1.5707 20 7 2.4117 -2.2793 -2.7540 21 6 2.3668 -3.5788 -3.4288 22 6 3.0865 -1.1713 -3.2153 23 6 3.8686 -0.9254 -4.3394 24 6 4.4216 0.3219 -4.5285 25 6 4.2132 1.3364 -3.6040 26 6 3.4522 1.1156 -2.4910 27 6 2.8787 -0.1401 -2.2813 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.1492 0.5389 2.5436 32 1 1.8326 -1.9679 3.6509 33 1 3.2855 -0.9397 3.6506 34 1 2.0491 0.8091 4.8996 35 1 0.5958 -0.2188 4.9003 36 1 1.8323 -1.9674 6.1493 37 1 3.2858 -0.9401 6.1490 38 1 3.0180 -2.1005 9.6336 39 1 1.1933 -2.6786 -0.9957 40 1 3.1946 -4.1972 -3.0818 41 1 1.4229 -4.0741 -3.2011 42 1 2.4495 -3.4319 -4.5057 43 1 4.0365 -1.7082 -5.0643 44 1 5.0262 0.5115 -5.4031 45 1 4.6566 2.3078 -3.7657 46 1 3.2948 1.9095 -1.7759 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000185318820.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:43:31 Heat of formation + Delta-G solvation = -16.762993 kcal Electronic energy + Delta-G solvation = -24939.592793 eV Core-core repulsion = 21406.976316 eV Total energy + Delta-G solvation = -3532.616477 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.34991 -40.65832 -37.92750 -36.96683 -35.55485 -35.15324 -33.17818 -32.19491 -31.18498 -29.57016 -28.55233 -27.09694 -25.64103 -24.41788 -23.49823 -22.34402 -22.28703 -21.63473 -20.00854 -18.55842 -17.99126 -17.87662 -17.15112 -16.72595 -16.61059 -16.40786 -16.25927 -16.17646 -15.48677 -14.92902 -14.79053 -14.64975 -14.47616 -14.20034 -13.90499 -13.74228 -13.65983 -13.51823 -13.32989 -13.17192 -12.81328 -12.69658 -12.54084 -12.46549 -12.36102 -12.09687 -12.08810 -11.66561 -11.65163 -11.54682 -11.23959 -10.70709 -10.54547 -10.41319 -10.03924 -9.06147 -8.45855 -8.18987 -6.30737 0.24468 0.73835 1.41949 1.45248 1.52998 1.64334 1.71932 1.95735 2.36023 2.45309 3.02904 3.14519 3.68651 3.78376 3.85189 3.97760 4.08956 4.19016 4.22471 4.27820 4.31214 4.33623 4.41598 4.46291 4.56561 4.62359 4.67787 4.76858 4.80411 4.93481 4.95589 4.99805 5.02262 5.07470 5.17927 5.24988 5.35067 5.47320 5.55051 5.60375 5.71134 5.73967 5.84436 5.85094 5.92081 6.22532 6.30727 6.43863 6.66146 6.86847 7.33827 7.38921 8.92943 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.025666 B = 0.002139 C = 0.002090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.672929 B =13088.233125 C =13395.264327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.023 4.023 3 H 0.117 0.883 4 C 0.510 3.490 5 O -0.582 6.582 6 N -0.714 5.714 7 C 0.131 3.869 8 C -0.101 4.101 9 C 0.023 3.977 10 C -0.541 4.541 11 H 0.068 0.932 12 C -0.005 4.005 13 N -0.936 5.936 14 Si 0.968 3.032 15 H -0.264 1.264 16 H -0.287 1.287 17 H -0.265 1.265 18 C -0.176 4.176 19 C 0.073 3.927 20 N -0.492 5.492 21 C 0.073 3.927 22 C 0.073 3.927 23 C -0.137 4.137 24 C -0.106 4.106 25 C -0.152 4.152 26 C -0.089 4.089 27 C -0.124 4.124 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.054 0.946 31 H 0.415 0.585 32 H 0.048 0.952 33 H 0.043 0.957 34 H 0.067 0.933 35 H 0.070 0.930 36 H -0.009 1.009 37 H -0.011 1.011 38 H 0.263 0.737 39 H 0.168 0.832 40 H 0.069 0.931 41 H 0.098 0.902 42 H 0.097 0.903 43 H 0.137 0.863 44 H 0.150 0.850 45 H 0.143 0.857 46 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.866 4.588 -30.322 30.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.045 4.045 3 H 0.135 0.865 4 C 0.298 3.702 5 O -0.462 6.462 6 N -0.367 5.367 7 C 0.007 3.993 8 C -0.139 4.139 9 C -0.014 4.014 10 C -0.579 4.579 11 H 0.086 0.914 12 C -0.203 4.203 13 N -0.576 5.576 14 Si 0.792 3.208 15 H -0.189 1.189 16 H -0.212 1.212 17 H -0.190 1.190 18 C -0.183 4.183 19 C -0.053 4.053 20 N -0.174 5.174 21 C -0.067 4.067 22 C -0.033 4.033 23 C -0.158 4.158 24 C -0.125 4.125 25 C -0.171 4.171 26 C -0.108 4.108 27 C -0.129 4.129 28 H 0.098 0.902 29 H 0.099 0.901 30 H 0.073 0.927 31 H 0.252 0.748 32 H 0.066 0.934 33 H 0.061 0.939 34 H 0.086 0.914 35 H 0.089 0.911 36 H 0.010 0.990 37 H 0.008 0.992 38 H 0.072 0.928 39 H 0.185 0.815 40 H 0.087 0.913 41 H 0.117 0.883 42 H 0.115 0.885 43 H 0.154 0.846 44 H 0.168 0.832 45 H 0.161 0.839 46 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -3.331 3.421 -30.419 30.792 hybrid contribution -0.060 0.003 1.336 1.338 sum -3.391 3.423 -29.083 29.479 Atomic orbital electron populations 1.21786 0.90321 1.02895 1.04066 1.19550 0.98308 0.99659 0.86950 0.86534 1.21273 0.79350 0.84263 0.85354 1.90670 1.39603 1.28550 1.87376 1.45978 1.53477 1.32358 1.04852 1.21179 0.97951 0.95928 0.84228 1.21591 1.00840 0.99313 0.92131 1.18945 0.94842 0.94906 0.92746 1.21659 1.31600 1.12728 0.91887 0.91422 1.26052 0.95313 0.95835 1.03052 1.70112 1.38204 1.24780 1.24538 0.85455 0.79020 0.78676 0.77613 1.18918 1.21240 1.18995 1.19727 1.06478 0.94737 0.97397 1.21643 0.99476 0.96612 0.87543 1.43994 1.42978 1.10769 1.19699 1.22171 1.04401 0.81431 0.98732 1.18609 0.99606 0.87286 0.97772 1.20315 1.00122 0.99083 0.96253 1.21163 0.99433 0.91850 1.00037 1.20946 1.00769 1.00579 0.94826 1.20519 0.97038 0.94903 0.98301 1.19364 1.02416 0.94966 0.96144 0.90166 0.90061 0.92704 0.74787 0.93375 0.93858 0.91408 0.91140 0.99038 0.99218 0.92835 0.81508 0.91261 0.88324 0.88456 0.84561 0.83210 0.83915 0.85216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.11 8.97 71.98 0.65 -1.47 16 2 C -0.02 -0.50 3.12 -12.29 -0.04 -0.54 16 3 H 0.12 2.14 8.14 -2.39 -0.02 2.12 16 4 C 0.51 15.15 7.10 87.66 0.62 15.77 16 5 O -0.58 -22.76 15.37 -3.02 -0.05 -22.81 16 6 N -0.71 -19.85 5.45 -463.07 -2.52 -22.37 16 7 C 0.13 4.73 5.67 86.38 0.49 5.22 16 8 C -0.10 -3.90 5.27 30.59 0.16 -3.74 16 9 C 0.02 1.22 4.97 29.85 0.15 1.37 16 10 C -0.54 -30.29 9.11 25.60 0.23 -30.05 16 11 H 0.07 3.53 7.74 -2.91 -0.02 3.51 16 12 C 0.00 -0.29 5.46 84.65 0.46 0.18 16 13 N -0.94 -57.63 13.29 21.45 0.28 -57.34 16 14 Si 0.97 43.88 29.54 68.60 2.03 45.91 16 15 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 16 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 17 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 18 C -0.18 -4.49 4.63 -18.63 -0.09 -4.57 16 19 C 0.07 1.80 9.96 83.00 0.83 2.63 16 20 N -0.49 -10.79 3.18 -539.26 -1.71 -12.50 16 21 C 0.07 0.96 11.03 127.77 1.41 2.36 16 22 C 0.07 1.74 6.81 39.03 0.27 2.01 16 23 C -0.14 -2.59 9.97 22.37 0.22 -2.36 16 24 C -0.11 -1.75 10.01 22.30 0.22 -1.53 16 25 C -0.15 -2.71 9.97 22.04 0.22 -2.49 16 26 C -0.09 -1.93 10.05 22.23 0.22 -1.70 16 27 C -0.12 -3.17 6.35 -20.20 -0.13 -3.30 16 28 H 0.08 1.01 7.56 -2.39 -0.02 0.99 16 29 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.05 0.93 8.02 -2.39 -0.02 0.91 16 31 H 0.42 8.57 7.89 -92.71 -0.73 7.84 16 32 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.04 1.72 8.14 -2.39 -0.02 1.71 16 34 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 35 H 0.07 2.51 8.14 -2.38 -0.02 2.50 16 36 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 37 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 38 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 39 H 0.17 3.77 8.06 -2.91 -0.02 3.74 16 40 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 42 H 0.10 0.88 8.11 -2.38 -0.02 0.86 16 43 H 0.14 1.85 8.06 -2.91 -0.02 1.83 16 44 H 0.15 1.54 8.06 -2.91 -0.02 1.52 16 45 H 0.14 1.78 8.06 -2.91 -0.02 1.75 16 46 H 0.13 2.34 8.06 -2.91 -0.02 2.32 16 Total: -1.00 -76.98 385.92 4.16 -72.83 By element: Atomic # 1 Polarization: 18.28 SS G_CDS: 0.23 Total: 18.51 kcal Atomic # 6 Polarization: -28.12 SS G_CDS: 5.90 Total: -22.22 kcal Atomic # 7 Polarization: -88.27 SS G_CDS: -3.95 Total: -92.22 kcal Atomic # 8 Polarization: -22.76 SS G_CDS: -0.05 Total: -22.81 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Total: -76.98 4.16 -72.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185318820.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.064 kcal (2) G-P(sol) polarization free energy of solvation -76.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds