Wall clock time and date at job start Tue Mar 31 2020 10:33:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08995 * 110.64326 * 2 1 4 4 C 1.54936 * 110.72091 * 123.15317 * 2 1 3 5 5 N 1.48537 * 103.37677 * 155.68820 * 4 2 1 6 6 C 1.46892 * 111.00105 * 200.36155 * 5 4 2 7 7 C 1.52999 * 117.49894 * 243.61871 * 6 5 4 8 8 C 1.52999 * 60.00345 * 252.51041 * 7 6 5 9 9 C 1.48064 * 105.73373 * 321.02016 * 5 4 2 10 10 C 1.53995 * 107.14579 * 25.08008 * 9 5 4 11 11 H 1.08997 * 110.39411 * 117.87330 * 10 9 5 12 12 N 1.46497 * 110.31126 * 240.00087 * 10 9 5 13 13 C 1.34770 * 119.99842 * 262.17803 * 12 10 9 14 14 O 1.21592 * 120.00335 * 359.97438 * 13 12 10 15 15 C 1.47639 * 119.99989 * 179.97438 * 13 12 10 16 16 C 1.40015 * 119.89315 * 359.72200 * 15 13 12 17 17 C 1.36326 * 120.10259 * 179.75812 * 16 15 13 18 18 C 1.40884 * 119.89542 * 0.51843 * 17 16 15 19 19 C 1.41103 * 120.10604 * 179.71626 * 18 17 16 20 20 H 1.07998 * 120.00020 * 205.34861 * 19 18 17 21 21 C 1.40228 * 120.00078 * 25.35042 * 19 18 17 22 22 N 1.30647 * 119.99864 * 17.01297 * 21 19 18 23 23 Si 1.86797 * 120.00068 * 197.01436 * 21 19 18 24 24 H 1.48496 * 109.46927 * 60.00208 * 23 21 19 25 25 H 1.48504 * 109.46865 * 179.97438 * 23 21 19 26 26 H 1.48492 * 109.47192 * 299.99921 * 23 21 19 27 27 C 1.40895 * 119.79225 * 359.73588 * 18 17 16 28 28 C 1.36318 * 119.89126 * 0.02562 * 27 18 17 29 29 H 1.09002 * 109.46973 * 303.55041 * 1 2 3 30 30 H 1.08998 * 109.46972 * 63.54666 * 1 2 3 31 31 H 1.08995 * 109.47314 * 183.54921 * 1 2 3 32 32 H 1.08998 * 110.66618 * 274.20118 * 4 2 1 33 33 H 1.08998 * 110.66892 * 37.16638 * 4 2 1 34 34 H 1.08998 * 115.55298 * 29.32685 * 6 5 4 35 35 H 1.09000 * 117.49743 * 0.02562 * 7 6 5 36 36 H 1.09007 * 117.49652 * 145.01771 * 7 6 5 37 37 H 1.08996 * 117.49796 * 252.51094 * 8 7 6 38 38 H 1.09004 * 117.49595 * 107.48636 * 8 7 6 39 39 H 1.09000 * 109.75845 * 265.76442 * 9 5 4 40 40 H 1.09005 * 110.15512 * 144.61337 * 9 5 4 41 41 H 0.96997 * 119.99775 * 82.16950 * 12 10 9 42 42 H 1.07993 * 119.95057 * 0.02562 * 16 15 13 43 43 H 1.08006 * 120.04938 * 180.27740 * 17 16 15 44 44 H 0.96993 * 120.00133 * 179.97438 * 22 21 19 45 45 H 1.07995 * 120.05490 * 180.02562 * 27 18 17 46 46 H 1.07999 * 119.94538 * 180.02562 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0782 -0.7925 1.2132 5 7 3.4316 -1.2116 0.7669 6 6 3.9165 -2.3518 1.5558 7 6 5.1629 -2.1363 2.4165 8 6 5.2491 -2.9805 1.1434 9 6 3.2893 -1.5721 -0.6621 10 6 2.0770 -0.7949 -1.2079 11 1 2.3879 -0.1134 -1.9997 12 7 1.0605 -1.7238 -1.7078 13 6 0.9898 -2.0003 -3.0249 14 8 1.7694 -1.4785 -3.7984 15 6 -0.0343 -2.9370 -3.5286 16 6 -0.9271 -3.5411 -2.6352 17 6 -1.8776 -4.4028 -3.0963 18 6 -1.9535 -4.6935 -4.4727 19 6 -2.9317 -5.5894 -4.9540 20 1 -2.7644 -6.1276 -5.8753 21 6 -4.1210 -5.7808 -4.2362 22 7 -4.4808 -4.9158 -3.3257 23 14 -5.1908 -7.2725 -4.5820 24 1 -4.4125 -8.5104 -4.3233 25 1 -6.3822 -7.2432 -3.6960 26 1 -5.6279 -7.2500 -6.0009 27 6 -1.0494 -4.0872 -5.3672 28 6 -0.1055 -3.2231 -4.8974 29 1 -0.3633 0.5680 0.8565 30 1 -0.3633 0.4578 -0.9201 31 1 -0.3634 -1.0256 0.0636 32 1 2.1445 -0.1522 2.0928 33 1 1.4543 -1.6624 1.4183 34 1 3.1451 -3.0168 1.9441 35 1 5.6228 -1.1483 2.3977 36 1 5.2116 -2.6595 3.3716 37 1 5.3545 -4.0590 1.2609 38 1 5.7659 -2.5479 0.2867 39 1 3.1160 -2.6441 -0.7562 40 1 4.1880 -1.2917 -1.2115 41 1 0.4384 -2.1399 -1.0907 42 1 -0.8656 -3.3208 -1.5798 43 1 -2.5688 -4.8649 -2.4069 44 1 -5.3036 -5.0479 -2.8294 45 1 -1.1040 -4.3067 -6.4232 46 1 0.5877 -2.7575 -5.5823 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270376114.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:33:00 Heat of formation + Delta-G solvation = 10.071719 kcal Electronic energy + Delta-G solvation = -25781.538547 eV Core-core repulsion = 22250.085710 eV Total energy + Delta-G solvation = -3531.452837 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -40.10877 -38.61130 -37.20445 -36.40205 -33.89378 -33.30084 -31.68897 -30.32394 -29.47568 -28.33326 -25.95272 -25.70719 -22.88070 -22.33426 -21.84542 -20.98586 -20.58481 -19.91813 -19.36647 -17.55494 -17.18273 -16.42641 -16.03060 -15.42193 -15.14797 -14.88839 -14.42751 -14.08730 -13.93916 -13.54115 -13.27795 -13.18252 -12.92041 -12.82769 -12.58526 -12.26536 -12.13794 -11.98061 -11.78032 -11.63539 -11.43096 -11.30110 -11.26366 -11.00852 -10.93132 -10.72858 -10.66706 -10.53912 -10.17990 -10.07464 -9.58286 -9.38620 -9.02097 -8.78583 -8.40423 -7.75318 -7.56581 -7.05594 -4.63320 2.20414 2.90511 2.92287 2.96162 3.00443 3.49145 3.66655 3.71580 3.83376 3.91929 4.43195 4.50159 4.68234 4.76468 4.79773 4.92870 5.09431 5.26652 5.33864 5.40478 5.48984 5.50140 5.55256 5.58281 5.64956 5.73279 5.81312 5.87728 5.98976 6.00472 6.04064 6.04433 6.18663 6.29143 6.30536 6.61568 6.74163 6.80127 6.94702 6.96050 7.06510 7.10649 7.40577 7.62355 7.75802 7.82862 8.04376 8.21100 8.36889 8.60296 8.72259 9.05541 9.86461 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.017863 B = 0.002872 C = 0.002800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.111966 B = 9747.198402 C = 9998.943214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.103 4.103 3 H 0.091 0.909 4 C 0.042 3.958 5 N -0.490 5.490 6 C -0.003 4.003 7 C -0.162 4.162 8 C -0.175 4.175 9 C 0.028 3.972 10 C 0.139 3.861 11 H 0.101 0.899 12 N -0.733 5.733 13 C 0.572 3.428 14 O -0.574 6.574 15 C -0.284 4.284 16 C -0.063 4.063 17 C -0.177 4.177 18 C 0.129 3.871 19 C -0.443 4.443 20 H 0.084 0.916 21 C 0.074 3.926 22 N -0.773 5.773 23 Si 0.914 3.086 24 H -0.261 1.261 25 H -0.276 1.276 26 H -0.262 1.262 27 C -0.239 4.239 28 C -0.022 4.022 29 H 0.057 0.943 30 H 0.064 0.936 31 H 0.056 0.944 32 H 0.082 0.918 33 H 0.047 0.953 34 H 0.091 0.909 35 H 0.099 0.901 36 H 0.092 0.908 37 H 0.094 0.906 38 H 0.098 0.902 39 H 0.055 0.945 40 H 0.082 0.918 41 H 0.396 0.604 42 H 0.086 0.914 43 H 0.120 0.880 44 H 0.287 0.713 45 H 0.098 0.902 46 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.223 4.068 11.504 14.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.123 4.123 3 H 0.110 0.890 4 C -0.086 4.086 5 N -0.214 5.214 6 C -0.113 4.113 7 C -0.200 4.200 8 C -0.213 4.213 9 C -0.100 4.100 10 C 0.032 3.968 11 H 0.119 0.881 12 N -0.387 5.387 13 C 0.368 3.632 14 O -0.456 6.456 15 C -0.288 4.288 16 C -0.082 4.082 17 C -0.196 4.196 18 C 0.126 3.874 19 C -0.471 4.471 20 H 0.103 0.897 21 C -0.147 4.147 22 N -0.396 5.396 23 Si 0.738 3.262 24 H -0.185 1.185 25 H -0.200 1.200 26 H -0.186 1.186 27 C -0.258 4.258 28 C -0.041 4.041 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.101 0.899 33 H 0.065 0.935 34 H 0.108 0.892 35 H 0.118 0.882 36 H 0.111 0.889 37 H 0.113 0.887 38 H 0.117 0.883 39 H 0.074 0.926 40 H 0.100 0.900 41 H 0.233 0.767 42 H 0.104 0.896 43 H 0.138 0.862 44 H 0.098 0.902 45 H 0.116 0.884 46 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 8.954 4.909 11.193 15.151 hybrid contribution -1.456 -1.524 0.197 2.117 sum 7.498 3.386 11.390 14.050 Atomic orbital electron populations 1.21687 0.93810 1.02028 1.02276 1.22394 0.96306 0.99837 0.93773 0.89034 1.23318 0.88601 0.98626 0.98023 1.64595 1.23686 1.31011 1.02104 1.22622 0.91406 0.95179 1.02054 1.23027 1.00820 1.01639 0.94542 1.23041 0.99646 0.99106 0.99495 1.23362 0.98983 0.99425 0.88271 1.21624 0.87634 0.91273 0.96259 0.88097 1.46064 1.35945 1.47871 1.08789 1.18615 0.83397 0.80392 0.80846 1.90632 1.44346 1.54380 1.56275 1.18896 1.04530 1.10629 0.94774 1.20445 0.94954 0.96675 0.96125 1.20971 1.00002 1.02736 0.95925 1.17778 0.89914 0.88254 0.91455 1.19820 0.99767 1.20148 1.07353 0.89747 1.26095 0.98432 0.96740 0.93422 1.69728 1.21318 1.31275 1.17300 0.86254 0.78769 0.81501 0.79718 1.18490 1.20046 1.18638 1.20731 1.02369 1.04579 0.98127 1.20365 0.95493 0.94738 0.93491 0.92414 0.91717 0.92532 0.89947 0.93476 0.89187 0.88240 0.88945 0.88739 0.88344 0.92627 0.89959 0.76691 0.89604 0.86235 0.90187 0.88372 0.88101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 8.50 37.16 0.32 -1.23 16 2 C -0.10 -1.16 3.63 -88.76 -0.32 -1.48 16 3 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 4 C 0.04 0.44 5.99 -1.90 -0.01 0.43 16 5 N -0.49 -5.69 5.44 -222.36 -1.21 -6.90 16 6 C 0.00 -0.04 5.12 -67.71 -0.35 -0.38 16 7 C -0.16 -1.46 10.46 -26.73 -0.28 -1.74 16 8 C -0.18 -1.71 9.90 -26.73 -0.26 -1.98 16 9 C 0.03 0.38 5.97 -2.66 -0.02 0.36 16 10 C 0.14 1.95 3.37 -66.57 -0.22 1.73 16 11 H 0.10 1.61 7.31 -51.93 -0.38 1.23 16 12 N -0.73 -11.93 4.12 -53.50 -0.22 -12.15 16 13 C 0.57 11.92 7.76 -12.43 -0.10 11.82 16 14 O -0.57 -13.42 15.84 5.28 0.08 -13.34 16 15 C -0.28 -6.39 5.89 -104.73 -0.62 -7.01 16 16 C -0.06 -1.37 9.47 -39.60 -0.38 -1.75 16 17 C -0.18 -4.28 8.63 -39.27 -0.34 -4.62 16 18 C 0.13 3.26 5.57 -106.80 -0.59 2.67 16 19 C -0.44 -10.94 9.05 -37.75 -0.34 -11.28 16 20 H 0.08 1.99 7.91 -52.49 -0.41 1.57 16 21 C 0.07 1.72 5.15 -17.31 -0.09 1.63 16 22 N -0.77 -18.33 10.95 55.56 0.61 -17.73 16 23 Si 0.91 17.13 29.59 -169.99 -5.03 12.10 16 24 H -0.26 -4.86 7.11 56.52 0.40 -4.46 16 25 H -0.28 -5.02 7.11 56.52 0.40 -4.62 16 26 H -0.26 -4.88 7.11 56.52 0.40 -4.48 16 27 C -0.24 -5.74 9.73 -39.27 -0.38 -6.12 16 28 C -0.02 -0.51 9.52 -39.61 -0.38 -0.88 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.06 0.64 6.39 -51.93 -0.33 0.31 16 32 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.05 0.50 7.69 -51.93 -0.40 0.10 16 34 H 0.09 0.94 7.84 -51.93 -0.41 0.54 16 35 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.10 1.02 8.06 -51.93 -0.42 0.60 16 39 H 0.06 0.81 7.56 -51.93 -0.39 0.42 16 40 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 41 H 0.40 5.94 4.86 -40.82 -0.20 5.74 16 42 H 0.09 1.59 6.37 -52.49 -0.33 1.26 16 43 H 0.12 2.93 6.17 -52.48 -0.32 2.61 16 44 H 0.29 6.14 8.29 -40.82 -0.34 5.80 16 45 H 0.10 2.21 8.06 -52.49 -0.42 1.78 16 46 H 0.10 2.29 7.63 -52.49 -0.40 1.89 16 LS Contribution 370.25 15.07 5.58 5.58 Total: -1.00 -27.22 370.25 -11.49 -38.71 By element: Atomic # 1 Polarization: 20.50 SS G_CDS: -6.94 Total: 13.56 kcal Atomic # 6 Polarization: -15.48 SS G_CDS: -4.36 Total: -19.84 kcal Atomic # 7 Polarization: -35.95 SS G_CDS: -0.82 Total: -36.77 kcal Atomic # 8 Polarization: -13.42 SS G_CDS: 0.08 Total: -13.34 kcal Atomic # 14 Polarization: 17.13 SS G_CDS: -5.03 Total: 12.10 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -27.22 -11.49 -38.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270376114.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.783 kcal (2) G-P(sol) polarization free energy of solvation -27.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.711 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds