Wall clock time and date at job start Tue Mar 31 2020 10:32:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08995 * 110.64326 * 2 1 4 4 C 1.54936 * 110.72091 * 123.15317 * 2 1 3 5 5 N 1.48537 * 103.37677 * 155.68820 * 4 2 1 6 6 C 1.46892 * 111.00105 * 200.36155 * 5 4 2 7 7 C 1.52999 * 117.49894 * 243.61871 * 6 5 4 8 8 C 1.52999 * 60.00345 * 252.51041 * 7 6 5 9 9 C 1.48064 * 105.73373 * 321.02016 * 5 4 2 10 10 C 1.53995 * 107.14579 * 25.08008 * 9 5 4 11 11 H 1.08997 * 110.39411 * 117.87330 * 10 9 5 12 12 N 1.46497 * 110.31126 * 240.00087 * 10 9 5 13 13 C 1.34770 * 119.99842 * 262.17803 * 12 10 9 14 14 O 1.21592 * 120.00335 * 359.97438 * 13 12 10 15 15 C 1.47639 * 119.99989 * 179.97438 * 13 12 10 16 16 C 1.40015 * 119.89315 * 359.72200 * 15 13 12 17 17 C 1.36326 * 120.10259 * 179.75812 * 16 15 13 18 18 C 1.40884 * 119.89542 * 0.51843 * 17 16 15 19 19 C 1.41103 * 120.10604 * 179.71626 * 18 17 16 20 20 H 1.07998 * 120.00020 * 205.34861 * 19 18 17 21 21 C 1.40228 * 120.00078 * 25.35042 * 19 18 17 22 22 N 1.30647 * 119.99864 * 17.01297 * 21 19 18 23 23 Si 1.86797 * 120.00068 * 197.01436 * 21 19 18 24 24 H 1.48496 * 109.46927 * 60.00208 * 23 21 19 25 25 H 1.48504 * 109.46865 * 179.97438 * 23 21 19 26 26 H 1.48492 * 109.47192 * 299.99921 * 23 21 19 27 27 C 1.40895 * 119.79225 * 359.73588 * 18 17 16 28 28 C 1.36318 * 119.89126 * 0.02562 * 27 18 17 29 29 H 1.09002 * 109.46973 * 303.55041 * 1 2 3 30 30 H 1.08998 * 109.46972 * 63.54666 * 1 2 3 31 31 H 1.08995 * 109.47314 * 183.54921 * 1 2 3 32 32 H 1.08998 * 110.66618 * 274.20118 * 4 2 1 33 33 H 1.08998 * 110.66892 * 37.16638 * 4 2 1 34 34 H 1.08998 * 115.55298 * 29.32685 * 6 5 4 35 35 H 1.09000 * 117.49743 * 0.02562 * 7 6 5 36 36 H 1.09007 * 117.49652 * 145.01771 * 7 6 5 37 37 H 1.08996 * 117.49796 * 252.51094 * 8 7 6 38 38 H 1.09004 * 117.49595 * 107.48636 * 8 7 6 39 39 H 1.09000 * 109.75845 * 265.76442 * 9 5 4 40 40 H 1.09005 * 110.15512 * 144.61337 * 9 5 4 41 41 H 0.96997 * 119.99775 * 82.16950 * 12 10 9 42 42 H 1.07993 * 119.95057 * 0.02562 * 16 15 13 43 43 H 1.08006 * 120.04938 * 180.27740 * 17 16 15 44 44 H 0.96993 * 120.00133 * 179.97438 * 22 21 19 45 45 H 1.07995 * 120.05490 * 180.02562 * 27 18 17 46 46 H 1.07999 * 119.94538 * 180.02562 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0782 -0.7925 1.2132 5 7 3.4316 -1.2116 0.7669 6 6 3.9165 -2.3518 1.5558 7 6 5.1629 -2.1363 2.4165 8 6 5.2491 -2.9805 1.1434 9 6 3.2893 -1.5721 -0.6621 10 6 2.0770 -0.7949 -1.2079 11 1 2.3879 -0.1134 -1.9997 12 7 1.0605 -1.7238 -1.7078 13 6 0.9898 -2.0003 -3.0249 14 8 1.7694 -1.4785 -3.7984 15 6 -0.0343 -2.9370 -3.5286 16 6 -0.9271 -3.5411 -2.6352 17 6 -1.8776 -4.4028 -3.0963 18 6 -1.9535 -4.6935 -4.4727 19 6 -2.9317 -5.5894 -4.9540 20 1 -2.7644 -6.1276 -5.8753 21 6 -4.1210 -5.7808 -4.2362 22 7 -4.4808 -4.9158 -3.3257 23 14 -5.1908 -7.2725 -4.5820 24 1 -4.4125 -8.5104 -4.3233 25 1 -6.3822 -7.2432 -3.6960 26 1 -5.6279 -7.2500 -6.0009 27 6 -1.0494 -4.0872 -5.3672 28 6 -0.1055 -3.2231 -4.8974 29 1 -0.3633 0.5680 0.8565 30 1 -0.3633 0.4578 -0.9201 31 1 -0.3634 -1.0256 0.0636 32 1 2.1445 -0.1522 2.0928 33 1 1.4543 -1.6624 1.4183 34 1 3.1451 -3.0168 1.9441 35 1 5.6228 -1.1483 2.3977 36 1 5.2116 -2.6595 3.3716 37 1 5.3545 -4.0590 1.2609 38 1 5.7659 -2.5479 0.2867 39 1 3.1160 -2.6441 -0.7562 40 1 4.1880 -1.2917 -1.2115 41 1 0.4384 -2.1399 -1.0907 42 1 -0.8656 -3.3208 -1.5798 43 1 -2.5688 -4.8649 -2.4069 44 1 -5.3036 -5.0479 -2.8294 45 1 -1.1040 -4.3067 -6.4232 46 1 0.5877 -2.7575 -5.5823 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270376114.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:32:59 Heat of formation + Delta-G solvation = -4.177458 kcal Electronic energy + Delta-G solvation = -25782.156438 eV Core-core repulsion = 22250.085710 eV Total energy + Delta-G solvation = -3532.070728 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.36709 -40.02072 -38.82919 -37.47822 -35.67755 -34.62651 -32.70253 -32.01556 -31.31419 -29.58555 -27.55492 -26.72994 -24.20960 -23.35393 -22.98392 -22.74119 -21.61334 -21.36961 -20.52236 -19.37367 -18.64901 -17.49590 -17.39524 -16.94821 -16.08229 -16.03211 -15.84845 -15.74645 -15.45397 -15.01536 -14.72500 -14.48745 -14.17780 -13.96806 -13.85485 -13.73167 -13.49120 -13.24417 -13.18189 -12.88107 -12.85267 -12.61262 -12.37994 -12.36551 -12.20249 -11.92268 -11.80241 -11.69621 -11.38128 -11.33058 -11.13445 -11.01053 -10.72735 -10.15914 -9.59646 -9.46523 -9.36261 -8.79788 -6.49700 0.42731 1.13273 1.38432 1.43747 1.51388 2.10749 2.17168 2.28410 2.74859 2.78974 2.96018 3.46988 3.61665 3.70572 3.91251 3.97843 4.08384 4.20341 4.22704 4.26876 4.31483 4.38493 4.43256 4.50644 4.62442 4.69422 4.77682 4.80616 4.83834 4.90527 4.94286 5.01979 5.05256 5.11801 5.14237 5.17772 5.28289 5.28869 5.32830 5.49982 5.57628 5.79533 5.81872 5.93047 5.97829 6.08234 6.21522 6.52483 6.67509 6.75996 6.87422 7.42799 8.15283 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.017863 B = 0.002872 C = 0.002800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.111966 B = 9747.198402 C = 9998.943214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.093 4.093 3 H 0.103 0.897 4 C 0.045 3.955 5 N -0.491 5.491 6 C -0.020 4.020 7 C -0.145 4.145 8 C -0.181 4.181 9 C 0.037 3.963 10 C 0.133 3.867 11 H 0.081 0.919 12 N -0.713 5.713 13 C 0.573 3.427 14 O -0.604 6.604 15 C -0.292 4.292 16 C -0.053 4.053 17 C -0.196 4.196 18 C 0.102 3.898 19 C -0.474 4.474 20 H 0.085 0.915 21 C 0.038 3.962 22 N -0.798 5.798 23 Si 0.987 3.013 24 H -0.258 1.258 25 H -0.263 1.263 26 H -0.259 1.259 27 C -0.253 4.253 28 C -0.033 4.033 29 H 0.081 0.919 30 H 0.047 0.953 31 H 0.052 0.948 32 H 0.102 0.898 33 H 0.049 0.951 34 H 0.094 0.906 35 H 0.098 0.902 36 H 0.111 0.889 37 H 0.103 0.897 38 H 0.088 0.912 39 H 0.041 0.959 40 H 0.075 0.925 41 H 0.405 0.595 42 H 0.119 0.881 43 H 0.114 0.886 44 H 0.297 0.703 45 H 0.104 0.896 46 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.869 3.922 13.818 16.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.112 4.112 3 H 0.121 0.879 4 C -0.082 4.082 5 N -0.214 5.214 6 C -0.129 4.129 7 C -0.183 4.183 8 C -0.219 4.219 9 C -0.092 4.092 10 C 0.027 3.973 11 H 0.099 0.901 12 N -0.366 5.366 13 C 0.367 3.633 14 O -0.488 6.488 15 C -0.297 4.297 16 C -0.072 4.072 17 C -0.215 4.215 18 C 0.099 3.901 19 C -0.502 4.502 20 H 0.103 0.897 21 C -0.181 4.181 22 N -0.422 5.422 23 Si 0.807 3.193 24 H -0.183 1.183 25 H -0.187 1.187 26 H -0.183 1.183 27 C -0.273 4.273 28 C -0.052 4.052 29 H 0.100 0.900 30 H 0.066 0.934 31 H 0.071 0.929 32 H 0.120 0.880 33 H 0.068 0.932 34 H 0.111 0.889 35 H 0.116 0.884 36 H 0.129 0.871 37 H 0.122 0.878 38 H 0.106 0.894 39 H 0.059 0.941 40 H 0.093 0.907 41 H 0.243 0.757 42 H 0.137 0.863 43 H 0.132 0.868 44 H 0.108 0.892 45 H 0.122 0.878 46 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 8.610 4.784 13.552 16.754 hybrid contribution -1.273 -1.396 -0.480 1.949 sum 7.337 3.388 13.072 15.369 Atomic orbital electron populations 1.21676 0.93437 1.02038 1.02504 1.22368 0.96494 1.00009 0.92370 0.87885 1.23368 0.87903 0.98849 0.98084 1.64633 1.24382 1.31472 1.00963 1.22743 0.91963 0.95308 1.02897 1.23076 0.98847 1.01515 0.94853 1.23076 0.99132 0.99800 0.99858 1.23169 0.98083 0.98198 0.89753 1.21782 0.87646 0.90928 0.96915 0.90088 1.45879 1.36080 1.47368 1.07279 1.18411 0.82731 0.80021 0.82125 1.90615 1.45328 1.55449 1.57447 1.19174 1.05011 1.10815 0.94682 1.20673 0.93565 0.95230 0.97706 1.21004 1.00952 1.04005 0.95563 1.18124 0.90655 0.89011 0.92282 1.20093 1.00824 1.20989 1.08255 0.89691 1.26912 0.99098 0.99236 0.92836 1.69747 1.22147 1.32551 1.17722 0.85162 0.77052 0.77383 0.79713 1.18259 1.18737 1.18323 1.20869 1.02781 1.05092 0.98512 1.20507 0.95514 0.94818 0.94341 0.90018 0.93401 0.92879 0.88018 0.93230 0.88877 0.88358 0.87061 0.87847 0.89361 0.94078 0.90697 0.75678 0.86282 0.86818 0.89163 0.87822 0.87994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.75 8.50 71.98 0.61 -2.14 16 2 C -0.09 -1.89 3.63 -9.59 -0.03 -1.92 16 3 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 4 C 0.05 0.83 5.99 86.65 0.52 1.35 16 5 N -0.49 -10.50 5.44 -857.41 -4.67 -15.17 16 6 C -0.02 -0.39 5.12 44.92 0.23 -0.16 16 7 C -0.15 -2.26 10.46 30.59 0.32 -1.94 16 8 C -0.18 -3.28 9.90 30.60 0.30 -2.98 16 9 C 0.04 0.96 5.97 86.42 0.52 1.48 16 10 C 0.13 3.66 3.37 45.87 0.15 3.82 16 11 H 0.08 2.60 7.31 -2.39 -0.02 2.58 16 12 N -0.71 -22.75 4.12 -441.43 -1.82 -24.57 16 13 C 0.57 23.97 7.76 86.73 0.67 24.64 16 14 O -0.60 -28.71 15.84 -4.01 -0.06 -28.78 16 15 C -0.29 -13.29 5.89 -19.93 -0.12 -13.40 16 16 C -0.05 -2.29 9.47 22.25 0.21 -2.08 16 17 C -0.20 -9.60 8.63 22.47 0.19 -9.40 16 18 C 0.10 5.30 5.57 -21.28 -0.12 5.18 16 19 C -0.47 -23.85 9.05 23.46 0.21 -23.64 16 20 H 0.09 4.09 7.91 -2.91 -0.02 4.07 16 21 C 0.04 1.76 5.15 85.35 0.44 2.20 16 22 N -0.80 -37.77 10.95 21.87 0.24 -37.53 16 23 Si 0.99 34.49 29.59 68.60 2.03 36.52 16 24 H -0.26 -8.89 7.11 99.48 0.71 -8.18 16 25 H -0.26 -8.60 7.11 99.48 0.71 -7.89 16 26 H -0.26 -8.87 7.11 99.48 0.71 -8.17 16 27 C -0.25 -12.57 9.73 22.47 0.22 -12.36 16 28 C -0.03 -1.57 9.52 22.25 0.21 -1.36 16 29 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.05 1.08 6.39 -2.39 -0.02 1.06 16 32 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.05 0.90 7.69 -2.39 -0.02 0.89 16 34 H 0.09 1.74 7.84 -2.39 -0.02 1.73 16 35 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.11 1.33 8.14 -2.38 -0.02 1.31 16 37 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 38 H 0.09 1.78 8.06 -2.38 -0.02 1.76 16 39 H 0.04 1.18 7.56 -2.39 -0.02 1.17 16 40 H 0.07 2.05 8.14 -2.38 -0.02 2.03 16 41 H 0.40 11.54 4.86 -92.71 -0.45 11.09 16 42 H 0.12 4.24 6.37 -2.91 -0.02 4.22 16 43 H 0.11 5.64 6.17 -2.91 -0.02 5.62 16 44 H 0.30 12.50 8.29 -92.71 -0.77 11.73 16 45 H 0.10 4.85 8.06 -2.91 -0.02 4.82 16 46 H 0.10 4.79 7.63 -2.91 -0.02 4.76 16 Total: -1.00 -59.47 370.25 0.80 -58.67 By element: Atomic # 1 Polarization: 43.03 SS G_CDS: 0.53 Total: 43.56 kcal Atomic # 6 Polarization: -37.25 SS G_CDS: 4.54 Total: -32.71 kcal Atomic # 7 Polarization: -71.02 SS G_CDS: -6.25 Total: -77.27 kcal Atomic # 8 Polarization: -28.71 SS G_CDS: -0.06 Total: -28.78 kcal Atomic # 14 Polarization: 34.49 SS G_CDS: 2.03 Total: 36.52 kcal Total: -59.47 0.80 -58.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270376114.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.497 kcal (2) G-P(sol) polarization free energy of solvation -59.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds