Wall clock time and date at job start Tue Mar 31 2020 10:33:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 110.78115 * 2 1 4 4 C 1.54934 * 110.72444 * 123.24879 * 2 1 3 5 5 N 1.48534 * 103.22436 * 155.77328 * 4 2 1 6 6 C 1.46905 * 110.99852 * 200.27942 * 5 4 2 7 7 C 1.52994 * 117.49628 * 243.62401 * 6 5 4 8 8 C 1.52998 * 117.49612 * 175.00073 * 6 5 4 9 9 C 1.47905 * 105.82261 * 320.79325 * 5 4 2 10 10 C 1.53997 * 107.05581 * 25.33095 * 9 5 4 11 11 H 1.08999 * 110.30579 * 239.85922 * 10 9 5 12 12 N 1.46493 * 110.30901 * 117.69334 * 10 9 5 13 13 C 1.34771 * 120.00321 * 89.27874 * 12 10 9 14 14 O 1.21591 * 119.99920 * 0.02562 * 13 12 10 15 15 C 1.47646 * 120.00350 * 180.02562 * 13 12 10 16 16 C 1.40020 * 119.89131 * 359.72874 * 15 13 12 17 17 C 1.36316 * 120.10027 * 179.71782 * 16 15 13 18 18 C 1.40884 * 119.89644 * 0.53250 * 17 16 15 19 19 C 1.41108 * 120.10483 * 179.76504 * 18 17 16 20 20 H 1.08007 * 119.99979 * 204.62057 * 19 18 17 21 21 C 1.40219 * 120.00126 * 24.61882 * 19 18 17 22 22 N 1.30642 * 120.00081 * 17.88177 * 21 19 18 23 23 Si 1.86808 * 120.00024 * 197.88412 * 21 19 18 24 24 H 1.48495 * 109.46790 * 60.00035 * 23 21 19 25 25 H 1.48506 * 109.46865 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.46805 * 299.99756 * 23 21 19 27 27 C 1.40888 * 119.79327 * 359.74449 * 18 17 16 28 28 C 1.36321 * 119.89110 * 359.97438 * 27 18 17 29 29 H 1.08997 * 109.47264 * 298.19948 * 1 2 3 30 30 H 1.08997 * 109.47261 * 58.20694 * 1 2 3 31 31 H 1.09005 * 109.47045 * 178.20417 * 1 2 3 32 32 H 1.09001 * 110.66526 * 37.33968 * 4 2 1 33 33 H 1.08998 * 110.81190 * 274.27913 * 4 2 1 34 34 H 1.08997 * 115.54655 * 29.32990 * 6 5 4 35 35 H 1.09002 * 117.50427 * 0.02562 * 7 6 5 36 36 H 1.09001 * 117.49905 * 145.02453 * 7 6 5 37 37 H 1.09002 * 117.49427 * 214.97397 * 8 6 5 38 38 H 1.08998 * 117.50090 * 0.02562 * 8 6 5 39 39 H 1.08999 * 109.91816 * 144.68482 * 9 5 4 40 40 H 1.08996 * 109.91372 * 265.98188 * 9 5 4 41 41 H 0.97011 * 120.00037 * 269.28800 * 12 10 9 42 42 H 1.07995 * 119.94547 * 0.02562 * 16 15 13 43 43 H 1.08001 * 120.05199 * 180.25366 * 17 16 15 44 44 H 0.97002 * 120.00259 * 180.02562 * 22 21 19 45 45 H 1.08001 * 120.05563 * 179.97438 * 27 18 17 46 46 H 1.08000 * 119.94729 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9167 1.0191 0.0000 4 6 2.0783 -0.7945 1.2119 5 7 3.4318 -1.2091 0.7621 6 6 3.9212 -2.3497 1.5480 7 6 5.1686 -2.1325 2.4068 8 6 5.2546 -2.9740 1.1319 9 6 3.2894 -1.5708 -0.6649 10 6 2.0770 -0.7927 -1.2093 11 1 1.3208 -1.4833 -1.5824 12 7 2.4970 0.1251 -2.2710 13 6 2.5239 -0.2933 -3.5519 14 8 2.1992 -1.4324 -3.8263 15 6 2.9477 0.6316 -4.6219 16 6 3.3158 1.9446 -4.3041 17 6 3.7132 2.8004 -5.2879 18 6 3.7426 2.3652 -6.6276 19 6 4.1486 3.2488 -7.6501 20 1 3.8135 3.0911 -8.6647 21 6 4.9869 4.3317 -7.3489 22 7 5.6698 4.3392 -6.2353 23 14 5.1271 5.7639 -8.5402 24 1 3.7913 6.3852 -8.7266 25 1 6.0696 6.7725 -7.9929 26 1 5.6314 5.2725 -9.8477 27 6 3.3658 1.0448 -6.9431 28 6 2.9752 0.1945 -5.9517 29 1 -0.3633 0.4856 0.9057 30 1 -0.3633 0.5414 -0.8734 31 1 -0.3633 -1.0272 -0.0322 32 1 1.4560 -1.6664 1.4136 33 1 2.1442 -0.1581 2.0943 34 1 3.1523 -3.0174 1.9365 35 1 5.6259 -1.1432 2.3891 36 1 5.2206 -2.6574 3.3607 37 1 5.3631 -4.0525 1.2471 38 1 5.7689 -2.5382 0.2754 39 1 4.1887 -1.2870 -1.2115 40 1 3.1161 -2.6426 -0.7608 41 1 2.7558 1.0341 -2.0522 42 1 3.2894 2.2784 -3.2773 43 1 4.0008 3.8118 -5.0414 44 1 6.2494 5.0885 -6.0268 45 1 3.3864 0.7068 -7.9686 46 1 2.6858 -0.8178 -6.1926 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270376116.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:33:04 Heat of formation + Delta-G solvation = 5.619443 kcal Electronic energy + Delta-G solvation = -25523.709976 eV Core-core repulsion = 21992.064074 eV Total energy + Delta-G solvation = -3531.645902 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.98870 -38.63136 -37.16263 -36.37589 -33.86774 -33.35069 -31.88577 -30.30280 -29.43861 -28.17993 -26.04137 -25.54871 -22.91350 -22.34897 -21.55307 -21.04216 -20.83025 -19.84455 -19.40224 -17.52499 -17.03380 -16.35774 -16.26643 -15.46166 -15.23613 -14.76699 -14.16426 -14.02065 -13.90293 -13.40744 -13.34353 -13.18442 -13.09858 -12.79545 -12.50130 -12.34054 -12.09039 -11.96346 -11.87792 -11.65103 -11.37010 -11.27337 -11.24148 -11.15013 -10.99386 -10.75343 -10.62988 -10.53747 -10.26707 -10.05590 -9.55271 -9.34316 -8.95542 -8.61553 -8.49218 -7.71524 -7.54007 -7.03232 -4.60072 2.23972 2.92466 2.94411 2.98408 3.04296 3.53095 3.73765 3.74647 3.81013 3.86097 4.41865 4.51735 4.67860 4.76071 4.81438 4.90610 5.08263 5.22928 5.31174 5.35406 5.45192 5.50786 5.54988 5.58285 5.63709 5.74480 5.76221 5.84715 5.99314 6.02785 6.05423 6.08481 6.09713 6.20488 6.32312 6.73457 6.77380 6.82950 6.95788 6.97393 7.08671 7.14231 7.43889 7.66225 7.79970 7.86220 8.07536 8.25833 8.40141 8.63352 8.75770 9.08713 9.88712 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.018267 B = 0.002733 C = 0.002646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.461592 B =10243.878270 C =10580.119988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.103 4.103 3 H 0.089 0.911 4 C 0.045 3.955 5 N -0.489 5.489 6 C -0.005 4.005 7 C -0.162 4.162 8 C -0.175 4.175 9 C 0.029 3.971 10 C 0.144 3.856 11 H 0.093 0.907 12 N -0.730 5.730 13 C 0.572 3.428 14 O -0.577 6.577 15 C -0.285 4.285 16 C -0.062 4.062 17 C -0.178 4.178 18 C 0.129 3.871 19 C -0.443 4.443 20 H 0.084 0.916 21 C 0.075 3.925 22 N -0.771 5.771 23 Si 0.914 3.086 24 H -0.260 1.260 25 H -0.276 1.276 26 H -0.262 1.262 27 C -0.240 4.240 28 C -0.022 4.022 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.055 0.945 32 H 0.047 0.953 33 H 0.084 0.916 34 H 0.090 0.910 35 H 0.100 0.900 36 H 0.092 0.908 37 H 0.094 0.906 38 H 0.099 0.901 39 H 0.085 0.915 40 H 0.050 0.950 41 H 0.398 0.602 42 H 0.089 0.911 43 H 0.120 0.880 44 H 0.287 0.713 45 H 0.098 0.902 46 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.550 -4.936 14.547 15.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.122 4.122 3 H 0.108 0.892 4 C -0.083 4.083 5 N -0.213 5.213 6 C -0.114 4.114 7 C -0.200 4.200 8 C -0.213 4.213 9 C -0.100 4.100 10 C 0.038 3.962 11 H 0.111 0.889 12 N -0.383 5.383 13 C 0.367 3.633 14 O -0.459 6.459 15 C -0.289 4.289 16 C -0.081 4.081 17 C -0.198 4.198 18 C 0.126 3.874 19 C -0.471 4.471 20 H 0.102 0.898 21 C -0.147 4.147 22 N -0.394 5.394 23 Si 0.737 3.263 24 H -0.185 1.185 25 H -0.200 1.200 26 H -0.187 1.187 27 C -0.259 4.259 28 C -0.041 4.041 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.066 0.934 33 H 0.102 0.898 34 H 0.107 0.893 35 H 0.119 0.881 36 H 0.110 0.890 37 H 0.112 0.888 38 H 0.118 0.882 39 H 0.103 0.897 40 H 0.069 0.931 41 H 0.234 0.766 42 H 0.107 0.893 43 H 0.138 0.862 44 H 0.098 0.902 45 H 0.116 0.884 46 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -3.206 -5.192 14.554 15.782 hybrid contribution -0.133 0.397 -0.395 0.575 sum -3.338 -4.795 14.160 15.318 Atomic orbital electron populations 1.21756 0.93914 1.02080 1.02199 1.22373 0.96038 1.00175 0.93647 0.89244 1.23261 0.88620 0.98565 0.97844 1.64587 1.23390 1.31188 1.02150 1.22627 0.91361 0.95208 1.02228 1.23029 1.00716 1.01780 0.94467 1.23050 0.99556 0.99047 0.99641 1.23348 0.99742 0.98616 0.88247 1.21695 0.95378 0.91974 0.87201 0.88943 1.45959 1.70594 1.15496 1.06249 1.18618 0.75567 0.87074 0.81997 1.90627 1.51389 1.20625 1.83247 1.18892 1.21952 0.95272 0.92792 1.20475 0.97477 0.92936 0.97190 1.20971 1.06075 0.99862 0.92856 1.17778 0.86271 0.90531 0.92847 1.19818 1.23926 1.06925 0.96410 0.89764 1.26095 0.93466 0.99158 0.95961 1.69735 1.17084 1.29882 1.22719 0.86266 0.79399 0.79807 0.80824 1.18483 1.20046 1.18663 1.20715 1.13188 0.94439 0.97591 1.20356 0.94346 0.97711 0.91672 0.92291 0.91901 0.92574 0.93439 0.89801 0.89265 0.88144 0.88965 0.88781 0.88216 0.89678 0.93122 0.76568 0.89324 0.86220 0.90163 0.88428 0.88173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 9.16 37.16 0.34 -1.03 16 2 C -0.10 -1.13 3.37 -88.76 -0.30 -1.43 16 3 H 0.09 0.99 7.76 -51.93 -0.40 0.59 16 4 C 0.05 0.46 6.00 -1.90 -0.01 0.45 16 5 N -0.49 -5.85 5.44 -222.50 -1.21 -7.06 16 6 C 0.00 -0.05 5.11 -67.71 -0.35 -0.40 16 7 C -0.16 -1.51 10.46 -26.73 -0.28 -1.79 16 8 C -0.18 -1.77 9.89 -26.73 -0.26 -2.03 16 9 C 0.03 0.40 5.95 -2.75 -0.02 0.39 16 10 C 0.14 2.05 2.92 -66.58 -0.19 1.85 16 11 H 0.09 1.46 7.24 -51.93 -0.38 1.08 16 12 N -0.73 -12.15 4.96 -53.50 -0.27 -12.41 16 13 C 0.57 12.05 7.76 -12.42 -0.10 11.95 16 14 O -0.58 -13.57 15.97 5.29 0.08 -13.49 16 15 C -0.28 -6.48 5.89 -104.72 -0.62 -7.10 16 16 C -0.06 -1.36 9.47 -39.61 -0.38 -1.74 16 17 C -0.18 -4.36 8.63 -39.27 -0.34 -4.70 16 18 C 0.13 3.28 5.58 -106.81 -0.60 2.69 16 19 C -0.44 -11.02 9.04 -37.75 -0.34 -11.36 16 20 H 0.08 2.00 7.91 -52.48 -0.42 1.58 16 21 C 0.07 1.74 5.14 -17.31 -0.09 1.65 16 22 N -0.77 -18.46 10.95 55.56 0.61 -17.86 16 23 Si 0.91 17.25 29.60 -169.99 -5.03 12.22 16 24 H -0.26 -4.90 7.11 56.52 0.40 -4.49 16 25 H -0.28 -5.06 7.11 56.52 0.40 -4.66 16 26 H -0.26 -4.91 7.11 56.52 0.40 -4.51 16 27 C -0.24 -5.82 9.73 -39.27 -0.38 -6.20 16 28 C -0.02 -0.51 9.52 -39.61 -0.38 -0.89 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.53 8.10 -51.93 -0.42 0.11 16 32 H 0.05 0.45 7.73 -51.93 -0.40 0.05 16 33 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.09 0.86 7.84 -51.93 -0.41 0.45 16 35 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.10 1.14 8.06 -51.93 -0.42 0.72 16 39 H 0.08 1.36 7.92 -51.93 -0.41 0.95 16 40 H 0.05 0.71 7.77 -51.93 -0.40 0.31 16 41 H 0.40 6.09 6.38 -40.82 -0.26 5.83 16 42 H 0.09 1.67 6.37 -52.49 -0.33 1.33 16 43 H 0.12 2.96 6.16 -52.49 -0.32 2.64 16 44 H 0.29 6.20 8.29 -40.82 -0.34 5.87 16 45 H 0.10 2.21 8.06 -52.49 -0.42 1.79 16 46 H 0.10 2.29 7.63 -52.49 -0.40 1.89 16 LS Contribution 373.94 15.07 5.64 5.64 Total: -1.00 -27.71 373.94 -11.53 -39.24 By element: Atomic # 1 Polarization: 20.50 SS G_CDS: -7.07 Total: 13.43 kcal Atomic # 6 Polarization: -15.41 SS G_CDS: -4.28 Total: -19.70 kcal Atomic # 7 Polarization: -36.47 SS G_CDS: -0.87 Total: -37.33 kcal Atomic # 8 Polarization: -13.57 SS G_CDS: 0.08 Total: -13.49 kcal Atomic # 14 Polarization: 17.25 SS G_CDS: -5.03 Total: 12.22 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -27.71 -11.53 -39.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270376116.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.858 kcal (2) G-P(sol) polarization free energy of solvation -27.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.238 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds