Wall clock time and date at job start Tue Mar 31 2020 10:33:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 110.78115 * 2 1 4 4 C 1.54934 * 110.72444 * 123.24879 * 2 1 3 5 5 N 1.48534 * 103.22436 * 155.77328 * 4 2 1 6 6 C 1.46905 * 110.99852 * 200.27942 * 5 4 2 7 7 C 1.52994 * 117.49628 * 243.62401 * 6 5 4 8 8 C 1.52998 * 117.49612 * 175.00073 * 6 5 4 9 9 C 1.47905 * 105.82261 * 320.79325 * 5 4 2 10 10 C 1.53997 * 107.05581 * 25.33095 * 9 5 4 11 11 H 1.08999 * 110.30579 * 239.85922 * 10 9 5 12 12 N 1.46493 * 110.30901 * 117.69334 * 10 9 5 13 13 C 1.34771 * 120.00321 * 89.27874 * 12 10 9 14 14 O 1.21591 * 119.99920 * 0.02562 * 13 12 10 15 15 C 1.47646 * 120.00350 * 180.02562 * 13 12 10 16 16 C 1.40020 * 119.89131 * 359.72874 * 15 13 12 17 17 C 1.36316 * 120.10027 * 179.71782 * 16 15 13 18 18 C 1.40884 * 119.89644 * 0.53250 * 17 16 15 19 19 C 1.41108 * 120.10483 * 179.76504 * 18 17 16 20 20 H 1.08007 * 119.99979 * 204.62057 * 19 18 17 21 21 C 1.40219 * 120.00126 * 24.61882 * 19 18 17 22 22 N 1.30642 * 120.00081 * 17.88177 * 21 19 18 23 23 Si 1.86808 * 120.00024 * 197.88412 * 21 19 18 24 24 H 1.48495 * 109.46790 * 60.00035 * 23 21 19 25 25 H 1.48506 * 109.46865 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.46805 * 299.99756 * 23 21 19 27 27 C 1.40888 * 119.79327 * 359.74449 * 18 17 16 28 28 C 1.36321 * 119.89110 * 359.97438 * 27 18 17 29 29 H 1.08997 * 109.47264 * 298.19948 * 1 2 3 30 30 H 1.08997 * 109.47261 * 58.20694 * 1 2 3 31 31 H 1.09005 * 109.47045 * 178.20417 * 1 2 3 32 32 H 1.09001 * 110.66526 * 37.33968 * 4 2 1 33 33 H 1.08998 * 110.81190 * 274.27913 * 4 2 1 34 34 H 1.08997 * 115.54655 * 29.32990 * 6 5 4 35 35 H 1.09002 * 117.50427 * 0.02562 * 7 6 5 36 36 H 1.09001 * 117.49905 * 145.02453 * 7 6 5 37 37 H 1.09002 * 117.49427 * 214.97397 * 8 6 5 38 38 H 1.08998 * 117.50090 * 0.02562 * 8 6 5 39 39 H 1.08999 * 109.91816 * 144.68482 * 9 5 4 40 40 H 1.08996 * 109.91372 * 265.98188 * 9 5 4 41 41 H 0.97011 * 120.00037 * 269.28800 * 12 10 9 42 42 H 1.07995 * 119.94547 * 0.02562 * 16 15 13 43 43 H 1.08001 * 120.05199 * 180.25366 * 17 16 15 44 44 H 0.97002 * 120.00259 * 180.02562 * 22 21 19 45 45 H 1.08001 * 120.05563 * 179.97438 * 27 18 17 46 46 H 1.08000 * 119.94729 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9167 1.0191 0.0000 4 6 2.0783 -0.7945 1.2119 5 7 3.4318 -1.2091 0.7621 6 6 3.9212 -2.3497 1.5480 7 6 5.1686 -2.1325 2.4068 8 6 5.2546 -2.9740 1.1319 9 6 3.2894 -1.5708 -0.6649 10 6 2.0770 -0.7927 -1.2093 11 1 1.3208 -1.4833 -1.5824 12 7 2.4970 0.1251 -2.2710 13 6 2.5239 -0.2933 -3.5519 14 8 2.1992 -1.4324 -3.8263 15 6 2.9477 0.6316 -4.6219 16 6 3.3158 1.9446 -4.3041 17 6 3.7132 2.8004 -5.2879 18 6 3.7426 2.3652 -6.6276 19 6 4.1486 3.2488 -7.6501 20 1 3.8135 3.0911 -8.6647 21 6 4.9869 4.3317 -7.3489 22 7 5.6698 4.3392 -6.2353 23 14 5.1271 5.7639 -8.5402 24 1 3.7913 6.3852 -8.7266 25 1 6.0696 6.7725 -7.9929 26 1 5.6314 5.2725 -9.8477 27 6 3.3658 1.0448 -6.9431 28 6 2.9752 0.1945 -5.9517 29 1 -0.3633 0.4856 0.9057 30 1 -0.3633 0.5414 -0.8734 31 1 -0.3633 -1.0272 -0.0322 32 1 1.4560 -1.6664 1.4136 33 1 2.1442 -0.1581 2.0943 34 1 3.1523 -3.0174 1.9365 35 1 5.6259 -1.1432 2.3891 36 1 5.2206 -2.6574 3.3607 37 1 5.3631 -4.0525 1.2471 38 1 5.7689 -2.5382 0.2754 39 1 4.1887 -1.2870 -1.2115 40 1 3.1161 -2.6426 -0.7608 41 1 2.7558 1.0341 -2.0522 42 1 3.2894 2.2784 -3.2773 43 1 4.0008 3.8118 -5.0414 44 1 6.2494 5.0885 -6.0268 45 1 3.3864 0.7068 -7.9686 46 1 2.6858 -0.8178 -6.1926 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270376116.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:33:03 Heat of formation + Delta-G solvation = -9.648600 kcal Electronic energy + Delta-G solvation = -25524.372048 eV Core-core repulsion = 21992.064074 eV Total energy + Delta-G solvation = -3532.307974 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.25031 -40.04906 -38.82639 -37.42435 -35.67091 -34.74527 -32.80104 -32.04106 -31.29857 -29.45451 -27.56496 -26.61719 -24.24623 -23.28843 -22.92189 -22.71176 -21.92593 -20.94704 -20.87307 -19.36361 -18.43600 -17.69081 -17.35584 -17.08406 -16.21927 -15.97484 -15.75294 -15.60359 -15.31457 -15.05936 -14.52106 -14.40557 -14.18724 -14.09988 -13.89176 -13.70515 -13.40836 -13.36052 -13.14029 -12.87567 -12.85306 -12.65670 -12.42812 -12.37102 -12.21899 -12.00932 -11.80101 -11.72216 -11.36541 -11.34801 -11.11932 -11.08818 -10.68586 -10.05630 -9.57557 -9.44355 -9.39864 -8.79272 -6.48419 0.44350 1.14984 1.38934 1.44615 1.52330 2.11619 2.17837 2.34023 2.72515 2.78563 2.92941 3.47704 3.60805 3.71366 3.95871 3.96757 4.05706 4.15852 4.23623 4.29652 4.33802 4.36599 4.44415 4.48383 4.60766 4.75961 4.76523 4.79976 4.83337 4.88909 4.92257 5.02462 5.04023 5.05229 5.15653 5.18216 5.27925 5.29908 5.31078 5.57663 5.64060 5.75520 5.83665 5.94975 5.99323 6.09399 6.22637 6.53750 6.70611 6.77050 6.88947 7.44150 8.15751 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.018267 B = 0.002733 C = 0.002646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.461592 B =10243.878270 C =10580.119988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.094 4.094 3 H 0.093 0.907 4 C 0.049 3.951 5 N -0.497 5.497 6 C -0.016 4.016 7 C -0.148 4.148 8 C -0.184 4.184 9 C 0.038 3.962 10 C 0.139 3.861 11 H 0.077 0.923 12 N -0.713 5.713 13 C 0.573 3.427 14 O -0.605 6.605 15 C -0.294 4.294 16 C -0.052 4.052 17 C -0.198 4.198 18 C 0.102 3.898 19 C -0.474 4.474 20 H 0.085 0.915 21 C 0.038 3.962 22 N -0.797 5.797 23 Si 0.988 3.012 24 H -0.258 1.258 25 H -0.264 1.264 26 H -0.259 1.259 27 C -0.254 4.254 28 C -0.032 4.032 29 H 0.082 0.918 30 H 0.050 0.950 31 H 0.057 0.943 32 H 0.058 0.942 33 H 0.102 0.898 34 H 0.103 0.897 35 H 0.092 0.908 36 H 0.115 0.885 37 H 0.108 0.892 38 H 0.079 0.921 39 H 0.059 0.941 40 H 0.044 0.956 41 H 0.407 0.593 42 H 0.122 0.878 43 H 0.114 0.886 44 H 0.297 0.703 45 H 0.104 0.896 46 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.820 -4.055 16.597 17.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.113 4.113 3 H 0.111 0.889 4 C -0.078 4.078 5 N -0.221 5.221 6 C -0.125 4.125 7 C -0.185 4.185 8 C -0.221 4.221 9 C -0.091 4.091 10 C 0.033 3.967 11 H 0.095 0.905 12 N -0.365 5.365 13 C 0.367 3.633 14 O -0.490 6.490 15 C -0.298 4.298 16 C -0.071 4.071 17 C -0.217 4.217 18 C 0.099 3.901 19 C -0.501 4.501 20 H 0.104 0.896 21 C -0.181 4.181 22 N -0.421 5.421 23 Si 0.807 3.193 24 H -0.182 1.182 25 H -0.188 1.188 26 H -0.183 1.183 27 C -0.274 4.274 28 C -0.052 4.052 29 H 0.101 0.899 30 H 0.069 0.931 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.120 0.880 34 H 0.121 0.879 35 H 0.110 0.890 36 H 0.134 0.866 37 H 0.127 0.873 38 H 0.098 0.902 39 H 0.078 0.922 40 H 0.062 0.938 41 H 0.244 0.756 42 H 0.140 0.860 43 H 0.132 0.868 44 H 0.108 0.892 45 H 0.122 0.878 46 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -3.476 -4.310 16.654 17.550 hybrid contribution -0.032 0.043 -0.944 0.945 sum -3.509 -4.267 15.710 16.653 Atomic orbital electron populations 1.21739 0.92685 1.02356 1.02816 1.22362 0.96950 0.99883 0.92130 0.88865 1.23328 0.87646 0.99083 0.97760 1.64580 1.24642 1.31963 1.00957 1.22782 0.91922 0.95211 1.02603 1.23073 0.99145 1.01360 0.94965 1.23065 0.99448 0.99998 0.99633 1.23106 0.98194 0.98043 0.89752 1.21886 0.95317 0.91972 0.87478 0.90460 1.45811 1.69075 1.16191 1.05383 1.18408 0.75482 0.86300 0.83089 1.90608 1.52810 1.21618 1.83952 1.19180 1.21508 0.95968 0.93165 1.20712 0.95800 0.92201 0.98419 1.21010 1.07487 1.00062 0.93164 1.18128 0.87049 0.91155 0.93793 1.20097 1.25141 1.08373 0.96505 0.89649 1.26929 0.92365 1.01086 0.97732 1.69758 1.17250 1.30939 1.24133 0.85159 0.79540 0.76224 0.78351 1.18199 1.18760 1.18298 1.20857 1.13848 0.94502 0.98172 1.20500 0.94553 0.97778 0.92326 0.89942 0.93122 0.92398 0.92327 0.87967 0.87911 0.88969 0.86646 0.87321 0.90238 0.92249 0.93769 0.75583 0.86025 0.86821 0.89152 0.87828 0.88022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.36 9.16 71.98 0.66 -1.70 16 2 C -0.09 -1.86 3.37 -9.59 -0.03 -1.90 16 3 H 0.09 1.82 7.76 -2.39 -0.02 1.80 16 4 C 0.05 0.87 6.00 86.65 0.52 1.39 16 5 N -0.50 -11.11 5.44 -857.86 -4.67 -15.77 16 6 C -0.02 -0.31 5.11 44.91 0.23 -0.08 16 7 C -0.15 -2.44 10.46 30.59 0.32 -2.12 16 8 C -0.18 -3.52 9.89 30.59 0.30 -3.22 16 9 C 0.04 1.05 5.95 86.45 0.51 1.57 16 10 C 0.14 3.86 2.92 45.87 0.13 4.00 16 11 H 0.08 2.42 7.24 -2.39 -0.02 2.40 16 12 N -0.71 -23.38 4.96 -441.43 -2.19 -25.57 16 13 C 0.57 24.33 7.76 86.73 0.67 25.00 16 14 O -0.61 -29.00 15.97 -4.00 -0.06 -29.06 16 15 C -0.29 -13.55 5.89 -19.93 -0.12 -13.67 16 16 C -0.05 -2.32 9.47 22.25 0.21 -2.11 16 17 C -0.20 -9.84 8.63 22.47 0.19 -9.65 16 18 C 0.10 5.34 5.58 -21.28 -0.12 5.22 16 19 C -0.47 -24.05 9.04 23.46 0.21 -23.84 16 20 H 0.09 4.14 7.91 -2.91 -0.02 4.12 16 21 C 0.04 1.77 5.14 85.35 0.44 2.21 16 22 N -0.80 -38.26 10.95 21.87 0.24 -38.02 16 23 Si 0.99 34.82 29.60 68.60 2.03 36.85 16 24 H -0.26 -8.93 7.11 99.48 0.71 -8.22 16 25 H -0.26 -8.70 7.11 99.48 0.71 -7.99 16 26 H -0.26 -8.93 7.11 99.48 0.71 -8.22 16 27 C -0.25 -12.77 9.73 22.47 0.22 -12.55 16 28 C -0.03 -1.57 9.52 22.25 0.21 -1.36 16 29 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.06 0.97 8.10 -2.38 -0.02 0.95 16 32 H 0.06 0.93 7.73 -2.39 -0.02 0.91 16 33 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.10 1.70 7.84 -2.39 -0.02 1.68 16 35 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.08 1.84 8.06 -2.39 -0.02 1.82 16 39 H 0.06 1.94 7.92 -2.39 -0.02 1.92 16 40 H 0.04 1.26 7.77 -2.39 -0.02 1.24 16 41 H 0.41 11.92 6.38 -92.70 -0.59 11.33 16 42 H 0.12 4.43 6.37 -2.91 -0.02 4.41 16 43 H 0.11 5.72 6.16 -2.91 -0.02 5.70 16 44 H 0.30 12.70 8.29 -92.71 -0.77 11.93 16 45 H 0.10 4.89 8.06 -2.91 -0.02 4.87 16 46 H 0.10 4.82 7.63 -2.91 -0.02 4.80 16 Total: -1.00 -61.04 373.94 0.31 -60.73 By element: Atomic # 1 Polarization: 43.27 SS G_CDS: 0.39 Total: 43.66 kcal Atomic # 6 Polarization: -37.38 SS G_CDS: 4.57 Total: -32.81 kcal Atomic # 7 Polarization: -72.75 SS G_CDS: -6.61 Total: -79.37 kcal Atomic # 8 Polarization: -29.00 SS G_CDS: -0.06 Total: -29.06 kcal Atomic # 14 Polarization: 34.82 SS G_CDS: 2.03 Total: 36.85 kcal Total: -61.04 0.31 -60.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270376116.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.080 kcal (2) G-P(sol) polarization free energy of solvation -61.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds