Wall clock time and date at job start Tue Mar 31 2020 11:11:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50693 * 120.00683 * 2 1 4 4 N 1.46898 * 109.47459 * 124.99839 * 3 2 1 5 5 C 1.46894 * 111.00025 * 297.58614 * 4 3 2 6 6 C 1.50702 * 109.47147 * 161.02285 * 5 4 3 7 7 H 1.08002 * 119.99668 * 4.94734 * 6 5 4 8 8 C 1.37875 * 120.00187 * 184.94521 * 6 5 4 9 9 N 1.31512 * 120.00156 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 120.00138 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47202 * 0.02562 * 10 8 6 12 12 H 1.48504 * 109.47217 * 119.99603 * 10 8 6 13 13 H 1.48498 * 109.47054 * 239.99594 * 10 8 6 14 14 C 1.46906 * 111.00178 * 173.63062 * 4 3 2 15 15 H 1.08996 * 109.46945 * 178.95288 * 14 4 3 16 16 C 1.53001 * 109.46599 * 58.95593 * 14 4 3 17 17 C 1.50694 * 109.47259 * 298.95883 * 14 4 3 18 18 O 1.21290 * 119.99801 * 11.05947 * 17 14 4 19 19 N 1.34777 * 120.00341 * 191.06263 * 17 14 4 20 20 C 1.46541 * 124.97200 * 355.07630 * 19 17 14 21 21 C 1.53746 * 105.27694 * 180.02562 * 20 19 17 22 22 C 1.51218 * 104.58434 * 359.95192 * 21 20 19 23 23 C 1.38183 * 130.97492 * 180.02562 * 22 21 20 24 24 C 1.38225 * 120.14999 * 180.02562 * 23 22 21 25 25 C 1.38295 * 119.82949 * 359.95097 * 24 23 22 26 26 C 1.37840 * 120.22361 * 0.02562 * 25 24 23 27 27 C 1.38562 * 108.55629 * 0.02562 * 22 21 20 28 28 H 1.07995 * 120.00462 * 180.02562 * 1 2 3 29 29 H 1.08003 * 119.99435 * 359.97438 * 1 2 3 30 30 H 1.08006 * 119.99646 * 179.97438 * 2 1 3 31 31 H 1.08999 * 109.46988 * 4.99960 * 3 2 1 32 32 H 1.09001 * 109.47236 * 245.00134 * 3 2 1 33 33 H 1.09002 * 109.47438 * 281.02161 * 5 4 3 34 34 H 1.08997 * 109.47347 * 41.02831 * 5 4 3 35 35 H 0.96998 * 120.00327 * 180.02562 * 9 8 6 36 36 H 1.08997 * 109.46820 * 184.05352 * 16 14 4 37 37 H 1.08999 * 109.47558 * 304.04592 * 16 14 4 38 38 H 1.08995 * 109.47430 * 64.05155 * 16 14 4 39 39 H 1.08994 * 110.29866 * 61.06941 * 20 19 17 40 40 H 1.08999 * 110.29950 * 299.01855 * 20 19 17 41 41 H 1.08998 * 110.41363 * 118.72510 * 21 20 19 42 42 H 1.09004 * 110.41353 * 241.17693 * 21 20 19 43 43 H 1.08001 * 119.92128 * 359.96290 * 23 22 21 44 44 H 1.08002 * 120.08436 * 179.97438 * 24 23 22 45 45 H 1.07997 * 119.88525 * 180.02562 * 25 24 23 46 46 H 1.07998 * 119.85626 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3049 0.0000 4 7 2.9964 1.3318 1.1345 5 6 2.2742 1.2602 2.4116 6 6 3.2212 0.8260 3.5006 7 1 4.2719 0.7008 3.2842 8 6 2.7463 0.5885 4.7730 9 7 1.4669 0.7415 5.0366 10 14 3.9202 0.0510 6.1230 11 1 5.2963 -0.0450 5.5730 12 1 3.8965 1.0463 7.2249 13 1 3.5012 -1.2748 6.6444 14 6 3.8556 2.5222 1.0816 15 1 4.5236 2.5266 1.9429 16 6 2.9855 3.7805 1.1046 17 6 4.6702 2.4979 -0.1860 18 8 4.4097 1.6972 -1.0589 19 7 5.6882 3.3659 -0.3496 20 6 6.0330 4.4417 0.5837 21 6 7.2509 5.1435 -0.0392 22 6 7.5130 4.3852 -1.3210 23 6 8.4773 4.5587 -2.2954 24 6 8.5114 3.7220 -3.3951 25 6 7.5781 2.7089 -3.5179 26 6 6.6147 2.5317 -2.5482 27 6 6.5731 3.3735 -1.4349 28 1 -0.5401 -0.9352 0.0004 29 1 -0.5399 0.9354 0.0004 30 1 1.8500 -0.9354 0.0004 31 1 1.3588 2.1315 0.0896 32 1 2.6214 1.4024 -0.9314 33 1 1.8669 2.2417 2.6544 34 1 1.4606 0.5395 2.3291 35 1 1.1329 0.5748 5.9318 36 1 3.6176 4.6614 0.9929 37 1 2.2685 3.7416 0.2845 38 1 2.4504 3.8350 2.0527 39 1 6.2926 4.0282 1.5581 40 1 5.2017 5.1403 0.6792 41 1 7.0195 6.1865 -0.2551 42 1 8.1113 5.0739 0.6264 43 1 9.2053 5.3505 -2.1980 44 1 9.2653 3.8588 -4.1563 45 1 7.6042 2.0544 -4.3765 46 1 5.8890 1.7384 -2.6498 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292241053.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:57 Heat of formation + Delta-G solvation = 41.472870 kcal Electronic energy + Delta-G solvation = -26638.731296 eV Core-core repulsion = 23108.640116 eV Total energy + Delta-G solvation = -3530.091181 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.18665 -39.13121 -36.91653 -36.28090 -33.34703 -32.66975 -32.33706 -30.49717 -29.18201 -28.93729 -27.25159 -25.21300 -24.03914 -23.22532 -22.94965 -21.45158 -20.62453 -19.32334 -18.73056 -17.10337 -16.50044 -16.30840 -16.07130 -15.83218 -15.28142 -14.95624 -14.47973 -14.34794 -14.11683 -13.88825 -13.64014 -13.48532 -12.91191 -12.80655 -12.73419 -12.56158 -12.31297 -12.24102 -12.00377 -11.72645 -11.51929 -11.41468 -11.20091 -10.98367 -10.86423 -10.68126 -10.46393 -10.37653 -10.19185 -9.99743 -9.42184 -9.18812 -8.85504 -8.55637 -8.38701 -7.78528 -7.26090 -6.04084 -4.05523 1.24103 1.34310 2.76454 2.80523 2.94269 3.28522 3.36867 3.41142 3.76892 4.23781 4.40916 4.41299 4.74201 4.82612 4.93107 4.97443 5.07092 5.15320 5.31609 5.32568 5.40358 5.44715 5.55856 5.57154 5.65642 5.66388 5.70670 5.82013 5.94999 5.96267 6.11224 6.18188 6.28877 6.36468 6.39546 6.41815 6.49204 6.52547 6.59565 7.01425 7.17316 7.24637 7.28245 7.41494 7.43076 7.79643 8.04869 8.15109 8.26997 8.51303 9.01561 9.58454 11.06126 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.013966 B = 0.004019 C = 0.003442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2004.347694 B = 6965.072542 C = 8132.243267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.113 4.113 3 C 0.056 3.944 4 N -0.511 5.511 5 C 0.188 3.812 6 C -0.507 4.507 7 H 0.061 0.939 8 C 0.057 3.943 9 N -0.896 5.896 10 Si 0.894 3.106 11 H -0.273 1.273 12 H -0.285 1.285 13 H -0.284 1.284 14 C 0.081 3.919 15 H 0.115 0.885 16 C -0.187 4.187 17 C 0.533 3.467 18 O -0.500 6.500 19 N -0.559 5.559 20 C 0.094 3.906 21 C -0.084 4.084 22 C -0.144 4.144 23 C -0.081 4.081 24 C -0.150 4.150 25 C -0.095 4.095 26 C -0.134 4.134 27 C 0.157 3.843 28 H 0.091 0.909 29 H 0.088 0.912 30 H 0.108 0.892 31 H 0.022 0.978 32 H 0.106 0.894 33 H -0.003 1.003 34 H 0.044 0.956 35 H 0.260 0.740 36 H 0.058 0.942 37 H 0.058 0.942 38 H 0.084 0.916 39 H 0.089 0.911 40 H 0.088 0.912 41 H 0.089 0.911 42 H 0.090 0.910 43 H 0.122 0.878 44 H 0.123 0.877 45 H 0.125 0.875 46 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.429 10.420 -12.927 19.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C -0.131 4.131 3 C -0.071 4.071 4 N -0.235 5.235 5 C 0.063 3.937 6 C -0.545 4.545 7 H 0.079 0.921 8 C -0.144 4.144 9 N -0.536 5.536 10 Si 0.722 3.278 11 H -0.197 1.197 12 H -0.211 1.211 13 H -0.210 1.210 14 C -0.032 4.032 15 H 0.133 0.867 16 C -0.246 4.246 17 C 0.324 3.676 18 O -0.374 6.374 19 N -0.283 5.283 20 C -0.028 4.028 21 C -0.121 4.121 22 C -0.148 4.148 23 C -0.099 4.099 24 C -0.169 4.169 25 C -0.113 4.113 26 C -0.155 4.155 27 C 0.061 3.939 28 H 0.110 0.890 29 H 0.106 0.894 30 H 0.126 0.874 31 H 0.040 0.960 32 H 0.124 0.876 33 H 0.014 0.986 34 H 0.062 0.938 35 H 0.070 0.930 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.102 0.898 39 H 0.107 0.893 40 H 0.106 0.894 41 H 0.107 0.893 42 H 0.108 0.892 43 H 0.140 0.860 44 H 0.141 0.859 45 H 0.143 0.857 46 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 10.283 9.463 -13.160 19.195 hybrid contribution -0.023 0.327 1.095 1.143 sum 10.260 9.790 -12.065 18.619 Atomic orbital electron populations 1.23626 0.95941 1.00953 1.04602 1.22805 0.95211 0.98872 0.96204 1.21738 0.94357 0.93772 0.97234 1.62158 1.22549 1.34330 1.04443 1.19920 0.94011 0.96357 0.83379 1.21188 0.94925 1.45229 0.93194 0.92102 1.24954 0.95101 0.95702 0.98642 1.69962 1.12847 1.49699 1.21074 0.86505 0.81221 0.78306 0.81770 1.19718 1.21131 1.21005 1.21479 0.96145 0.91471 0.94084 0.86696 1.22501 1.00856 0.97147 1.04060 1.21195 0.78688 0.78271 0.89434 1.90506 1.66185 1.36895 1.43784 1.46160 1.29112 1.31907 1.21083 1.22326 0.97904 0.88875 0.93666 1.21098 0.97798 0.99400 0.93842 1.20033 0.97983 0.98643 0.98106 1.20313 0.97216 0.99355 0.93040 1.20963 1.00355 0.97015 0.98596 1.20923 0.94354 0.97745 0.98301 1.21003 1.00983 1.00573 0.92913 1.18514 0.90507 0.95669 0.89216 0.89035 0.89395 0.87382 0.96016 0.87639 0.98576 0.93760 0.92990 0.92368 0.92322 0.89756 0.89319 0.89394 0.89285 0.89154 0.86026 0.85945 0.85722 0.84295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.76 14.28 29.02 0.41 -3.35 16 2 C -0.11 -2.19 8.24 -36.03 -0.30 -2.49 16 3 C 0.06 1.11 4.44 -4.98 -0.02 1.09 16 4 N -0.51 -11.14 4.31 -230.92 -0.99 -12.13 16 5 C 0.19 4.74 4.50 -4.98 -0.02 4.72 16 6 C -0.51 -13.86 8.66 -34.44 -0.30 -14.16 16 7 H 0.06 1.67 7.57 -52.49 -0.40 1.27 16 8 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 9 N -0.90 -26.07 13.29 55.43 0.74 -25.34 16 10 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 11 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 12 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 13 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 14 C 0.08 1.49 2.06 -68.86 -0.14 1.35 16 15 H 0.12 2.20 7.08 -51.93 -0.37 1.83 16 16 C -0.19 -2.97 8.46 37.16 0.31 -2.66 16 17 C 0.53 9.43 6.93 -10.99 -0.08 9.36 16 18 O -0.50 -9.97 11.71 5.55 0.06 -9.90 16 19 N -0.56 -8.26 3.13 -112.83 -0.35 -8.61 16 20 C 0.09 1.03 6.22 -3.63 -0.02 1.01 16 21 C -0.08 -0.76 6.94 -27.24 -0.19 -0.95 16 22 C -0.14 -1.68 6.23 -104.27 -0.65 -2.33 16 23 C -0.08 -0.81 10.04 -39.61 -0.40 -1.21 16 24 C -0.15 -1.50 10.06 -39.57 -0.40 -1.90 16 25 C -0.09 -1.08 10.02 -39.71 -0.40 -1.48 16 26 C -0.13 -1.92 9.46 -39.21 -0.37 -2.30 16 27 C 0.16 2.26 6.63 -83.47 -0.55 1.71 16 28 H 0.09 1.46 8.06 -52.49 -0.42 1.03 16 29 H 0.09 1.48 7.84 -52.48 -0.41 1.07 16 30 H 0.11 2.14 8.06 -52.48 -0.42 1.71 16 31 H 0.02 0.42 6.21 -51.93 -0.32 0.10 16 32 H 0.11 2.12 4.95 -51.93 -0.26 1.87 16 33 H 0.00 -0.09 5.97 -51.93 -0.31 -0.40 16 34 H 0.04 1.23 6.65 -51.93 -0.35 0.89 16 35 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 36 H 0.06 0.73 5.29 -51.93 -0.27 0.46 16 37 H 0.06 0.94 6.31 -51.93 -0.33 0.61 16 38 H 0.08 1.48 6.43 -51.93 -0.33 1.15 16 39 H 0.09 0.92 7.99 -51.93 -0.42 0.51 16 40 H 0.09 0.84 5.86 -51.93 -0.30 0.54 16 41 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 44 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 45 H 0.12 1.15 8.06 -52.49 -0.42 0.72 16 46 H 0.14 2.23 6.31 -52.49 -0.33 1.90 16 LS Contribution 361.26 15.07 5.44 5.44 Total: -1.00 -31.68 361.26 -9.82 -41.50 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: -6.49 Total: 4.88 kcal Atomic # 6 Polarization: -8.89 SS G_CDS: -3.20 Total: -12.10 kcal Atomic # 7 Polarization: -45.47 SS G_CDS: -0.61 Total: -46.08 kcal Atomic # 8 Polarization: -9.97 SS G_CDS: 0.06 Total: -9.90 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.68 -9.82 -41.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292241053.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.974 kcal (2) G-P(sol) polarization free energy of solvation -31.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.501 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds