Wall clock time and date at job start Tue Mar 31 2020 11:11:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50693 * 120.00683 * 2 1 4 4 N 1.46898 * 109.47459 * 124.99839 * 3 2 1 5 5 C 1.46894 * 111.00025 * 297.58614 * 4 3 2 6 6 C 1.50702 * 109.47147 * 161.02285 * 5 4 3 7 7 H 1.08002 * 119.99668 * 4.94734 * 6 5 4 8 8 C 1.37875 * 120.00187 * 184.94521 * 6 5 4 9 9 N 1.31512 * 120.00156 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 120.00138 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47202 * 0.02562 * 10 8 6 12 12 H 1.48504 * 109.47217 * 119.99603 * 10 8 6 13 13 H 1.48498 * 109.47054 * 239.99594 * 10 8 6 14 14 C 1.46906 * 111.00178 * 173.63062 * 4 3 2 15 15 H 1.08996 * 109.46945 * 178.95288 * 14 4 3 16 16 C 1.53001 * 109.46599 * 58.95593 * 14 4 3 17 17 C 1.50694 * 109.47259 * 298.95883 * 14 4 3 18 18 O 1.21290 * 119.99801 * 11.05947 * 17 14 4 19 19 N 1.34777 * 120.00341 * 191.06263 * 17 14 4 20 20 C 1.46541 * 124.97200 * 355.07630 * 19 17 14 21 21 C 1.53746 * 105.27694 * 180.02562 * 20 19 17 22 22 C 1.51218 * 104.58434 * 359.95192 * 21 20 19 23 23 C 1.38183 * 130.97492 * 180.02562 * 22 21 20 24 24 C 1.38225 * 120.14999 * 180.02562 * 23 22 21 25 25 C 1.38295 * 119.82949 * 359.95097 * 24 23 22 26 26 C 1.37840 * 120.22361 * 0.02562 * 25 24 23 27 27 C 1.38562 * 108.55629 * 0.02562 * 22 21 20 28 28 H 1.07995 * 120.00462 * 180.02562 * 1 2 3 29 29 H 1.08003 * 119.99435 * 359.97438 * 1 2 3 30 30 H 1.08006 * 119.99646 * 179.97438 * 2 1 3 31 31 H 1.08999 * 109.46988 * 4.99960 * 3 2 1 32 32 H 1.09001 * 109.47236 * 245.00134 * 3 2 1 33 33 H 1.09002 * 109.47438 * 281.02161 * 5 4 3 34 34 H 1.08997 * 109.47347 * 41.02831 * 5 4 3 35 35 H 0.96998 * 120.00327 * 180.02562 * 9 8 6 36 36 H 1.08997 * 109.46820 * 184.05352 * 16 14 4 37 37 H 1.08999 * 109.47558 * 304.04592 * 16 14 4 38 38 H 1.08995 * 109.47430 * 64.05155 * 16 14 4 39 39 H 1.08994 * 110.29866 * 61.06941 * 20 19 17 40 40 H 1.08999 * 110.29950 * 299.01855 * 20 19 17 41 41 H 1.08998 * 110.41363 * 118.72510 * 21 20 19 42 42 H 1.09004 * 110.41353 * 241.17693 * 21 20 19 43 43 H 1.08001 * 119.92128 * 359.96290 * 23 22 21 44 44 H 1.08002 * 120.08436 * 179.97438 * 24 23 22 45 45 H 1.07997 * 119.88525 * 180.02562 * 25 24 23 46 46 H 1.07998 * 119.85626 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3049 0.0000 4 7 2.9964 1.3318 1.1345 5 6 2.2742 1.2602 2.4116 6 6 3.2212 0.8260 3.5006 7 1 4.2719 0.7008 3.2842 8 6 2.7463 0.5885 4.7730 9 7 1.4669 0.7415 5.0366 10 14 3.9202 0.0510 6.1230 11 1 5.2963 -0.0450 5.5730 12 1 3.8965 1.0463 7.2249 13 1 3.5012 -1.2748 6.6444 14 6 3.8556 2.5222 1.0816 15 1 4.5236 2.5266 1.9429 16 6 2.9855 3.7805 1.1046 17 6 4.6702 2.4979 -0.1860 18 8 4.4097 1.6972 -1.0589 19 7 5.6882 3.3659 -0.3496 20 6 6.0330 4.4417 0.5837 21 6 7.2509 5.1435 -0.0392 22 6 7.5130 4.3852 -1.3210 23 6 8.4773 4.5587 -2.2954 24 6 8.5114 3.7220 -3.3951 25 6 7.5781 2.7089 -3.5179 26 6 6.6147 2.5317 -2.5482 27 6 6.5731 3.3735 -1.4349 28 1 -0.5401 -0.9352 0.0004 29 1 -0.5399 0.9354 0.0004 30 1 1.8500 -0.9354 0.0004 31 1 1.3588 2.1315 0.0896 32 1 2.6214 1.4024 -0.9314 33 1 1.8669 2.2417 2.6544 34 1 1.4606 0.5395 2.3291 35 1 1.1329 0.5748 5.9318 36 1 3.6176 4.6614 0.9929 37 1 2.2685 3.7416 0.2845 38 1 2.4504 3.8350 2.0527 39 1 6.2926 4.0282 1.5581 40 1 5.2017 5.1403 0.6792 41 1 7.0195 6.1865 -0.2551 42 1 8.1113 5.0739 0.6264 43 1 9.2053 5.3505 -2.1980 44 1 9.2653 3.8588 -4.1563 45 1 7.6042 2.0544 -4.3765 46 1 5.8890 1.7384 -2.6498 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292241053.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:56 Heat of formation + Delta-G solvation = 23.064560 kcal Electronic energy + Delta-G solvation = -26639.529541 eV Core-core repulsion = 23108.640116 eV Total energy + Delta-G solvation = -3530.889425 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.28467 -40.38805 -38.36212 -37.36079 -34.98952 -34.57714 -33.31681 -31.81985 -30.33579 -29.91189 -29.12531 -26.59928 -25.74150 -24.36140 -24.07524 -22.47640 -21.98180 -20.72456 -20.17377 -18.42939 -18.32390 -17.62785 -17.13303 -16.86622 -16.63752 -16.38933 -16.16137 -15.58454 -15.44293 -15.14225 -14.98445 -14.67685 -14.40442 -14.17319 -13.86367 -13.70662 -13.64838 -13.30110 -13.27712 -13.13439 -12.90021 -12.78349 -12.65016 -12.57000 -12.32906 -12.12869 -12.05639 -11.89717 -11.76367 -11.31416 -11.15066 -10.76461 -10.58027 -10.01563 -9.72193 -9.01370 -8.75550 -8.16928 -6.26219 0.28751 0.44555 1.38351 1.40133 1.42702 1.54462 1.55281 1.67273 2.41617 2.87278 3.12722 3.21611 3.33837 3.59517 3.73772 3.98614 4.05382 4.09679 4.14138 4.17943 4.19882 4.27347 4.36037 4.49449 4.53191 4.61120 4.66002 4.72938 4.77952 4.82292 4.95068 5.00701 5.03433 5.05189 5.14032 5.30852 5.31356 5.36675 5.50063 5.53856 5.63570 5.64316 5.71799 5.85296 6.10072 6.11635 6.20078 6.39704 6.58139 6.87603 6.96671 7.42504 8.93245 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.013966 B = 0.004019 C = 0.003442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2004.347694 B = 6965.072542 C = 8132.243267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.143 4.143 3 C 0.065 3.935 4 N -0.527 5.527 5 C 0.208 3.792 6 C -0.520 4.520 7 H 0.055 0.945 8 C 0.009 3.991 9 N -0.930 5.930 10 Si 0.962 3.038 11 H -0.267 1.267 12 H -0.274 1.274 13 H -0.283 1.283 14 C 0.081 3.919 15 H 0.105 0.895 16 C -0.175 4.175 17 C 0.531 3.469 18 O -0.535 6.535 19 N -0.557 5.557 20 C 0.081 3.919 21 C -0.076 4.076 22 C -0.141 4.141 23 C -0.079 4.079 24 C -0.140 4.140 25 C -0.102 4.102 26 C -0.162 4.162 27 C 0.115 3.885 28 H 0.111 0.889 29 H 0.097 0.903 30 H 0.098 0.902 31 H 0.025 0.975 32 H 0.103 0.897 33 H -0.017 1.017 34 H 0.014 0.986 35 H 0.264 0.736 36 H 0.094 0.906 37 H 0.055 0.945 38 H 0.065 0.935 39 H 0.091 0.909 40 H 0.102 0.898 41 H 0.117 0.883 42 H 0.111 0.889 43 H 0.158 0.842 44 H 0.156 0.844 45 H 0.141 0.859 46 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.910 12.588 -13.121 22.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.161 4.161 3 C -0.062 4.062 4 N -0.251 5.251 5 C 0.082 3.918 6 C -0.558 4.558 7 H 0.073 0.927 8 C -0.189 4.189 9 N -0.570 5.570 10 Si 0.787 3.213 11 H -0.191 1.191 12 H -0.199 1.199 13 H -0.209 1.209 14 C -0.031 4.031 15 H 0.123 0.877 16 C -0.233 4.233 17 C 0.322 3.678 18 O -0.412 6.412 19 N -0.281 5.281 20 C -0.039 4.039 21 C -0.112 4.112 22 C -0.144 4.144 23 C -0.097 4.097 24 C -0.159 4.159 25 C -0.121 4.121 26 C -0.182 4.182 27 C 0.020 3.980 28 H 0.129 0.871 29 H 0.115 0.885 30 H 0.116 0.884 31 H 0.043 0.957 32 H 0.121 0.879 33 H 0.001 0.999 34 H 0.032 0.968 35 H 0.072 0.928 36 H 0.112 0.888 37 H 0.074 0.926 38 H 0.084 0.916 39 H 0.109 0.891 40 H 0.120 0.880 41 H 0.135 0.865 42 H 0.129 0.871 43 H 0.176 0.824 44 H 0.174 0.826 45 H 0.159 0.841 46 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 12.805 11.673 -13.369 21.885 hybrid contribution -0.730 -0.317 1.041 1.310 sum 12.075 11.355 -12.328 20.658 Atomic orbital electron populations 1.23858 0.95303 1.02319 1.01707 1.22818 0.96074 0.98356 0.98894 1.21657 0.94069 0.94148 0.96330 1.62000 1.22806 1.36833 1.03474 1.19505 0.93031 0.94521 0.84732 1.21435 0.94927 1.45310 0.94169 0.92693 1.25765 0.96671 0.95578 1.00929 1.70075 1.14590 1.50555 1.21783 0.85451 0.79149 0.77877 0.78834 1.19128 1.19942 1.20914 1.21440 0.95943 0.91315 0.94444 0.87680 1.22375 1.00738 0.97403 1.02826 1.20889 0.79478 0.78746 0.88684 1.90487 1.67509 1.38587 1.44613 1.46087 1.28148 1.31800 1.22031 1.22676 0.99652 0.88273 0.93322 1.21192 0.97372 1.00050 0.92615 1.20433 0.97079 0.97610 0.99254 1.20785 0.97022 0.99820 0.92097 1.21410 0.99813 0.95509 0.99149 1.21171 0.94047 0.98764 0.98100 1.20999 1.01856 1.00741 0.94651 1.18830 0.92006 0.97599 0.89545 0.87072 0.88498 0.88397 0.95736 0.87906 0.99923 0.96760 0.92754 0.88765 0.92567 0.91573 0.89055 0.87968 0.86520 0.87063 0.82402 0.82594 0.84132 0.87433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -6.92 14.28 67.78 0.97 -5.95 16 2 C -0.14 -5.82 8.24 25.65 0.21 -5.61 16 3 C 0.06 2.70 4.44 85.56 0.38 3.08 16 4 N -0.53 -24.11 4.31 -884.50 -3.81 -27.92 16 5 C 0.21 10.95 4.50 85.56 0.38 11.33 16 6 C -0.52 -29.22 8.66 25.60 0.22 -29.00 16 7 H 0.05 3.08 7.57 -2.91 -0.02 3.06 16 8 C 0.01 0.50 5.46 84.65 0.46 0.96 16 9 N -0.93 -54.97 13.29 21.45 0.28 -54.68 16 10 Si 0.96 43.90 29.54 68.60 2.03 45.93 16 11 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 12 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 13 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 14 C 0.08 3.08 2.06 44.17 0.09 3.18 16 15 H 0.11 4.16 7.08 -2.39 -0.02 4.15 16 16 C -0.17 -5.63 8.46 71.98 0.61 -5.02 16 17 C 0.53 19.58 6.93 87.66 0.61 20.18 16 18 O -0.54 -22.77 11.71 -3.06 -0.04 -22.80 16 19 N -0.56 -16.53 3.13 -629.28 -1.97 -18.50 16 20 C 0.08 1.64 6.22 86.62 0.54 2.18 16 21 C -0.08 -1.10 6.94 30.26 0.21 -0.89 16 22 C -0.14 -2.91 6.23 -19.64 -0.12 -3.03 16 23 C -0.08 -1.28 10.04 22.25 0.22 -1.06 16 24 C -0.14 -2.34 10.06 22.28 0.22 -2.12 16 25 C -0.10 -2.25 10.02 22.19 0.22 -2.03 16 26 C -0.16 -4.81 9.46 22.51 0.21 -4.60 16 27 C 0.11 3.29 6.63 38.25 0.25 3.54 16 28 H 0.11 3.48 8.06 -2.91 -0.02 3.45 16 29 H 0.10 3.26 7.84 -2.91 -0.02 3.23 16 30 H 0.10 4.12 8.06 -2.91 -0.02 4.09 16 31 H 0.02 0.99 6.21 -2.39 -0.01 0.98 16 32 H 0.10 4.40 4.95 -2.42 -0.01 4.38 16 33 H -0.02 -0.91 5.97 -2.39 -0.01 -0.93 16 34 H 0.01 0.83 6.65 -2.39 -0.02 0.82 16 35 H 0.26 14.66 8.31 -92.71 -0.77 13.89 16 36 H 0.09 2.28 5.29 -2.39 -0.01 2.26 16 37 H 0.06 1.82 6.31 -2.39 -0.02 1.81 16 38 H 0.07 2.38 6.43 -2.39 -0.02 2.36 16 39 H 0.09 1.78 7.99 -2.39 -0.02 1.76 16 40 H 0.10 1.71 5.86 -2.39 -0.01 1.69 16 41 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 43 H 0.16 1.43 8.06 -2.91 -0.02 1.41 16 44 H 0.16 1.56 8.06 -2.91 -0.02 1.54 16 45 H 0.14 2.48 8.06 -2.91 -0.02 2.45 16 46 H 0.11 3.80 6.31 -2.91 -0.02 3.78 16 Total: -1.00 -72.04 361.26 3.17 -68.86 By element: Atomic # 1 Polarization: 22.98 SS G_CDS: 0.98 Total: 23.96 kcal Atomic # 6 Polarization: -20.54 SS G_CDS: 5.70 Total: -14.84 kcal Atomic # 7 Polarization: -95.61 SS G_CDS: -5.50 Total: -101.11 kcal Atomic # 8 Polarization: -22.77 SS G_CDS: -0.04 Total: -22.80 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Total: -72.04 3.17 -68.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292241053.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.928 kcal (2) G-P(sol) polarization free energy of solvation -72.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds