Wall clock time and date at job start Tue Mar 31 2020 11:58:42
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 S 1.81401 * 109.46866 * 2 1
4 4 C 1.81406 * 102.99914 * 180.02562 * 3 2 1
5 5 H 1.09002 * 110.05140 * 53.58789 * 4 3 2
6 6 C 1.54265 * 110.03153 * 292.17146 * 4 3 2
7 7 C 1.54890 * 104.19259 * 217.10514 * 6 4 3
8 8 C 1.54970 * 102.77885 * 37.91561 * 7 6 4
9 9 C 1.53872 * 110.03206 * 175.00147 * 4 3 2
10 10 H 1.08999 * 110.03257 * 238.62202 * 9 4 3
11 11 N 1.46901 * 110.03120 * 359.97438 * 9 4 3
12 12 C 1.46897 * 110.99838 * 194.56568 * 11 9 4
13 13 H 1.09007 * 109.47318 * 324.99830 * 12 11 9
14 14 C 1.53007 * 109.47356 * 85.00194 * 12 11 9
15 15 C 1.50706 * 109.47210 * 205.00067 * 12 11 9
16 16 O 1.21280 * 119.99834 * 0.02562 * 15 12 11
17 17 N 1.34777 * 120.00145 * 179.97438 * 15 12 11
18 18 C 1.46500 * 119.99803 * 0.02562 * 17 15 12
19 19 C 1.46499 * 119.99928 * 180.02562 * 17 15 12
20 20 C 1.50700 * 109.46996 * 90.00533 * 19 17 15
21 21 H 1.07995 * 120.00172 * 359.97438 * 20 19 17
22 22 C 1.37871 * 119.99969 * 180.02562 * 20 19 17
23 23 N 1.31518 * 119.99903 * 359.97438 * 22 20 19
24 24 Si 1.86797 * 120.00169 * 179.97438 * 22 20 19
25 25 H 1.48499 * 109.46959 * 89.99855 * 24 22 20
26 26 H 1.48502 * 109.47412 * 209.99806 * 24 22 20
27 27 H 1.48500 * 109.46973 * 329.99854 * 24 22 20
28 28 H 1.09004 * 109.46796 * 180.02562 * 1 2 3
29 29 H 1.09002 * 109.47165 * 299.99166 * 1 2 3
30 30 H 1.08991 * 109.47399 * 60.00020 * 1 2 3
31 31 H 1.09002 * 109.47164 * 240.00045 * 2 1 3
32 32 H 1.08996 * 109.47546 * 120.00452 * 2 1 3
33 33 H 1.09003 * 110.48542 * 335.77887 * 6 4 3
34 34 H 1.08993 * 110.49159 * 98.29449 * 6 4 3
35 35 H 1.08998 * 110.75869 * 156.25508 * 7 6 4
36 36 H 1.09004 * 110.75815 * 279.43938 * 7 6 4
37 37 H 1.08999 * 110.52937 * 203.43650 * 8 7 6
38 38 H 1.08998 * 110.47908 * 80.76391 * 8 7 6
39 39 H 1.00903 * 110.99922 * 318.51565 * 11 9 4
40 40 H 1.08997 * 109.47112 * 59.99692 * 14 12 11
41 41 H 1.09001 * 109.47023 * 180.02562 * 14 12 11
42 42 H 1.08994 * 109.46769 * 300.00125 * 14 12 11
43 43 H 1.09005 * 109.47120 * 90.00229 * 18 17 15
44 44 H 1.09004 * 109.47312 * 209.99755 * 18 17 15
45 45 H 1.08993 * 109.47631 * 330.00035 * 18 17 15
46 46 H 1.09002 * 109.46843 * 209.99884 * 19 17 15
47 47 H 1.08991 * 109.47059 * 329.99933 * 19 17 15
48 48 H 0.97001 * 120.00048 * 180.02562 * 23 22 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 16 2.1346 1.7103 0.0000
4 6 3.9371 1.5059 -0.0008
5 1 4.2396 0.8600 -0.8251
6 6 4.4011 0.9027 1.3411
7 6 5.7452 1.6148 1.6330
8 6 5.4807 3.0608 1.1422
9 6 4.6230 2.8775 -0.1268
10 1 5.2578 2.8975 -1.0127
11 7 3.6120 3.9400 -0.2092
12 6 4.2092 5.2002 -0.6709
13 1 5.2220 5.2879 -0.2776
14 6 4.2529 5.2137 -2.2003
15 6 3.3784 6.3587 -0.1820
16 8 2.3868 6.1545 0.4858
17 7 3.7380 7.6215 -0.4859
18 6 4.9361 7.8681 -1.2920
19 6 2.9307 8.7476 -0.0100
20 6 3.4376 9.1955 1.3366
21 1 4.2769 8.6915 1.7926
22 6 2.8294 10.2480 1.9870
23 7 1.8070 10.8615 1.4319
24 14 3.4572 10.8028 3.6565
25 1 4.5002 11.8436 3.4722
26 1 2.3323 11.3639 4.4471
27 1 4.0383 9.6419 4.3775
28 1 -0.3633 -1.0277 0.0005
29 1 -0.3633 0.5137 0.8901
30 1 -0.3634 0.5138 -0.8899
31 1 1.8933 -0.5138 -0.8900
32 1 1.8934 -0.5139 0.8899
33 1 3.6768 1.1179 2.1268
34 1 4.5499 -0.1727 1.2448
35 1 5.9647 1.6032 2.7006
36 1 6.5565 1.1552 1.0685
37 1 6.4190 3.5597 0.8997
38 1 4.9313 3.6248 1.8958
39 1 2.8450 3.6641 -0.8041
40 1 3.2402 5.1261 -2.5936
41 1 4.6965 6.1487 -2.5428
42 1 4.8538 4.3759 -2.5539
43 1 4.6664 7.8847 -2.3481
44 1 5.3707 8.8280 -1.0130
45 1 5.6627 7.0752 -1.1150
46 1 3.0044 9.5726 -0.7187
47 1 1.8899 8.4367 0.0785
48 1 1.3792 11.6023 1.8893
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000348463322.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:58:42
Heat of formation + Delta-G solvation = -34.948184 kcal
Electronic energy + Delta-G solvation = -25066.150704 eV
Core-core repulsion = 21668.189609 eV
Total energy + Delta-G solvation = -3397.961095 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 314.177 amu
Computer time = 0.60 seconds
Orbital eigenvalues (eV)
-39.49686 -38.22761 -34.93783 -34.65065 -32.91053 -32.52106 -30.25291 -29.04878
-27.58277 -26.45356 -25.83371 -23.97307 -23.55394 -21.91967 -20.96158 -20.02735
-18.40364 -16.90652 -16.44071 -16.38687 -15.85357 -15.38267 -15.13375 -14.91752
-14.78851 -14.41857 -14.29587 -14.05735 -13.57324 -13.23976 -12.93352 -12.81948
-12.55433 -12.26344 -12.10482 -11.87573 -11.78140 -11.67761 -11.44342 -11.37491
-11.30678 -11.11520 -11.10495 -11.00709 -10.86375 -10.81022 -10.72291 -10.49240
-10.07562 -9.67188 -9.53385 -8.76540 -8.36360 -8.15176 -7.55620 -7.49332
-5.96806 -4.01023 1.56174 2.54521 3.34907 3.41646 3.46410 3.62802
3.85668 4.29511 4.34109 4.45540 4.55728 4.75577 4.83517 4.88012
5.08389 5.12662 5.19903 5.22147 5.24323 5.26630 5.32144 5.37545
5.42653 5.50606 5.53423 5.61119 5.64697 5.70794 5.75802 5.83702
5.85994 5.92772 5.94268 5.98746 6.04859 6.09707 6.31299 6.35089
6.99774 7.23760 7.53705 7.55519 7.67154 8.00785 8.32567 8.57080
9.00149 9.30119 9.64188 11.11187
Molecular weight = 314.18amu
Principal moments of inertia in cm(-1)
A = 0.014967 B = 0.003365 C = 0.003311
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1870.310151 B = 8319.114660 C = 8454.727019
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.135 4.135
2 C -0.112 4.112
3 S -0.198 6.198
4 C -0.068 4.068
5 H 0.084 0.916
6 C -0.115 4.115
7 C -0.119 4.119
8 C -0.118 4.118
9 C 0.105 3.895
10 H 0.050 0.950
11 N -0.650 5.650
12 C 0.068 3.932
13 H 0.096 0.904
14 C -0.190 4.190
15 C 0.510 3.490
16 O -0.516 6.516
17 N -0.607 5.607
18 C 0.084 3.916
19 C 0.247 3.753
20 C -0.523 4.523
21 H 0.056 0.944
22 C 0.060 3.940
23 N -0.896 5.896
24 Si 0.897 3.103
25 H -0.281 1.281
26 H -0.285 1.285
27 H -0.274 1.274
28 H 0.065 0.935
29 H 0.066 0.934
30 H 0.063 0.937
31 H 0.072 0.928
32 H 0.076 0.924
33 H 0.084 0.916
34 H 0.063 0.937
35 H 0.071 0.929
36 H 0.064 0.936
37 H 0.064 0.936
38 H 0.088 0.912
39 H 0.352 0.648
40 H 0.061 0.939
41 H 0.081 0.919
42 H 0.056 0.944
43 H 0.044 0.956
44 H 0.071 0.929
45 H 0.055 0.945
46 H 0.030 0.970
47 H 0.043 0.957
48 H 0.262 0.738
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.612 -21.858 -7.180 24.234
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.194 4.194
2 C -0.261 4.261
3 S 0.029 5.971
4 C -0.198 4.198
5 H 0.103 0.897
6 C -0.155 4.155
7 C -0.158 4.158
8 C -0.156 4.156
9 C -0.006 4.006
10 H 0.068 0.932
11 N -0.287 5.287
12 C -0.045 4.045
13 H 0.114 0.886
14 C -0.249 4.249
15 C 0.294 3.706
16 O -0.390 6.390
17 N -0.341 5.341
18 C -0.060 4.060
19 C 0.128 3.872
20 C -0.562 4.562
21 H 0.075 0.925
22 C -0.142 4.142
23 N -0.535 5.535
24 Si 0.725 3.275
25 H -0.207 1.207
26 H -0.211 1.211
27 H -0.199 1.199
28 H 0.084 0.916
29 H 0.085 0.915
30 H 0.082 0.918
31 H 0.090 0.910
32 H 0.095 0.905
33 H 0.102 0.898
34 H 0.081 0.919
35 H 0.089 0.911
36 H 0.083 0.917
37 H 0.083 0.917
38 H 0.106 0.894
39 H 0.178 0.822
40 H 0.080 0.920
41 H 0.099 0.901
42 H 0.075 0.925
43 H 0.063 0.937
44 H 0.090 0.910
45 H 0.074 0.926
46 H 0.048 0.952
47 H 0.061 0.939
48 H 0.072 0.928
Dipole moment (debyes) X Y Z Total
from point charges 6.322 -20.712 -6.158 22.514
hybrid contribution 1.334 -0.922 -0.158 1.630
sum 7.656 -21.634 -6.316 23.802
Atomic orbital electron populations
1.21470 0.92411 1.02063 1.03416 1.23440 1.00336 0.98152 1.04148
1.87587 1.03240 1.08715 1.97547 1.23999 0.94839 0.99838 1.01077
0.89724 1.22735 0.98175 0.98809 0.95764 1.22434 0.96465 0.95632
1.01296 1.22521 0.98849 0.96787 0.97440 1.21944 0.92508 0.88145
0.97975 0.93195 1.60317 1.09427 1.00926 1.58018 1.21515 0.98722
0.90575 0.93730 0.88609 1.22695 1.02893 1.03422 0.95930 1.20116
0.86087 0.83334 0.81037 1.90677 1.26734 1.84190 1.37417 1.48120
1.26830 1.07034 1.52107 1.21735 0.88033 1.02048 0.94225 1.19234
0.91676 0.82110 0.94161 1.21454 1.15899 1.15219 1.03611 0.92525
1.24933 0.94884 0.96410 0.97939 1.69938 1.21979 1.22872 1.38746
0.86510 0.78318 0.78678 0.84000 1.20749 1.21117 1.19877 0.91631
0.91492 0.91775 0.90955 0.90480 0.89770 0.91851 0.91055 0.91733
0.91737 0.89368 0.82243 0.91972 0.90077 0.92522 0.93727 0.91015
0.92632 0.95223 0.93909 0.92811
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.18 9.92 37.16 0.37 -0.81 16
2 C -0.11 -1.03 6.55 37.16 0.24 -0.79 16
3 S -0.20 -2.48 18.17 -107.50 -1.95 -4.43 16
4 C -0.07 -0.72 3.41 -25.62 -0.09 -0.80 16
5 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16
6 C -0.12 -1.09 6.26 -25.07 -0.16 -1.25 16
7 C -0.12 -1.09 6.91 -24.69 -0.17 -1.26 16
8 C -0.12 -1.36 5.83 -25.03 -0.15 -1.50 16
9 C 0.11 1.24 3.08 -66.60 -0.21 1.04 16
10 H 0.05 0.53 7.21 -51.93 -0.37 0.15 16
11 N -0.65 -9.98 4.73 -99.78 -0.47 -10.45 16
12 C 0.07 1.06 2.04 -68.86 -0.14 0.92 16
13 H 0.10 1.39 6.61 -51.93 -0.34 1.04 16
14 C -0.19 -2.37 8.79 37.16 0.33 -2.05 16
15 C 0.51 11.05 7.14 -10.98 -0.08 10.97 16
16 O -0.52 -13.75 16.01 5.56 0.09 -13.66 16
17 N -0.61 -13.20 2.86 -182.95 -0.52 -13.73 16
18 C 0.08 1.34 8.80 59.85 0.53 1.87 16
19 C 0.25 6.67 5.16 -5.19 -0.03 6.64 16
20 C -0.52 -15.24 9.39 -34.44 -0.32 -15.57 16
21 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16
22 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16
23 N -0.90 -27.24 13.29 55.43 0.74 -26.50 16
24 Si 0.90 22.39 29.54 -169.99 -5.02 17.37 16
25 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16
26 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16
27 H -0.27 -6.84 7.11 56.52 0.40 -6.44 16
28 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16
29 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16
30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16
31 H 0.07 0.58 8.14 -51.92 -0.42 0.16 16
32 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16
33 H 0.08 0.93 7.81 -51.93 -0.41 0.52 16
34 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16
35 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16
36 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16
37 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16
38 H 0.09 1.29 8.05 -51.93 -0.42 0.87 16
39 H 0.35 5.54 6.11 -26.26 -0.16 5.38 16
40 H 0.06 0.83 8.13 -51.93 -0.42 0.41 16
41 H 0.08 0.95 4.53 -51.93 -0.24 0.71 16
42 H 0.06 0.58 7.37 -51.93 -0.38 0.19 16
43 H 0.04 0.61 6.95 -51.93 -0.36 0.25 16
44 H 0.07 1.19 8.07 -51.93 -0.42 0.77 16
45 H 0.06 0.73 6.01 -51.93 -0.31 0.42 16
46 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16
47 H 0.04 1.30 7.42 -51.93 -0.39 0.92 16
48 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16
LS Contribution 384.55 15.07 5.80 5.80
Total: -1.00 -34.10 384.55 -9.73 -43.82
By element:
Atomic # 1 Polarization: 11.12 SS G_CDS: -8.41 Total: 2.71 kcal
Atomic # 6 Polarization: -0.96 SS G_CDS: 0.03 Total: -0.92 kcal
Atomic # 7 Polarization: -50.42 SS G_CDS: -0.26 Total: -50.68 kcal
Atomic # 8 Polarization: -13.75 SS G_CDS: 0.09 Total: -13.66 kcal
Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal
Atomic # 16 Polarization: -2.48 SS G_CDS: -1.95 Total: -4.43 kcal
Total LS contribution 5.80 Total: 5.80 kcal
Total: -34.10 -9.73 -43.82 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000348463322.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 8.876 kcal
(2) G-P(sol) polarization free energy of solvation -34.097 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.221 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.727 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.824 kcal
(6) G-S(sol) free energy of system = (1) + (5) -34.948 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.60 seconds