Wall clock time and date at job start Tue Mar 31 2020 11:58:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 S 1.81401 * 109.46866 * 2 1 4 4 C 1.81406 * 102.99914 * 180.02562 * 3 2 1 5 5 H 1.09002 * 110.05140 * 53.58789 * 4 3 2 6 6 C 1.54265 * 110.03153 * 292.17146 * 4 3 2 7 7 C 1.54890 * 104.19259 * 217.10514 * 6 4 3 8 8 C 1.54970 * 102.77885 * 37.91561 * 7 6 4 9 9 C 1.53872 * 110.03206 * 175.00147 * 4 3 2 10 10 H 1.08999 * 110.03257 * 238.62202 * 9 4 3 11 11 N 1.46901 * 110.03120 * 359.97438 * 9 4 3 12 12 C 1.46897 * 110.99838 * 194.56568 * 11 9 4 13 13 H 1.09007 * 109.47318 * 324.99830 * 12 11 9 14 14 C 1.53007 * 109.47356 * 85.00194 * 12 11 9 15 15 C 1.50706 * 109.47210 * 205.00067 * 12 11 9 16 16 O 1.21280 * 119.99834 * 0.02562 * 15 12 11 17 17 N 1.34777 * 120.00145 * 179.97438 * 15 12 11 18 18 C 1.46500 * 119.99803 * 0.02562 * 17 15 12 19 19 C 1.46499 * 119.99928 * 180.02562 * 17 15 12 20 20 C 1.50700 * 109.46996 * 90.00533 * 19 17 15 21 21 H 1.07995 * 120.00172 * 359.97438 * 20 19 17 22 22 C 1.37871 * 119.99969 * 180.02562 * 20 19 17 23 23 N 1.31518 * 119.99903 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 120.00169 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.46959 * 89.99855 * 24 22 20 26 26 H 1.48502 * 109.47412 * 209.99806 * 24 22 20 27 27 H 1.48500 * 109.46973 * 329.99854 * 24 22 20 28 28 H 1.09004 * 109.46796 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47165 * 299.99166 * 1 2 3 30 30 H 1.08991 * 109.47399 * 60.00020 * 1 2 3 31 31 H 1.09002 * 109.47164 * 240.00045 * 2 1 3 32 32 H 1.08996 * 109.47546 * 120.00452 * 2 1 3 33 33 H 1.09003 * 110.48542 * 335.77887 * 6 4 3 34 34 H 1.08993 * 110.49159 * 98.29449 * 6 4 3 35 35 H 1.08998 * 110.75869 * 156.25508 * 7 6 4 36 36 H 1.09004 * 110.75815 * 279.43938 * 7 6 4 37 37 H 1.08999 * 110.52937 * 203.43650 * 8 7 6 38 38 H 1.08998 * 110.47908 * 80.76391 * 8 7 6 39 39 H 1.00903 * 110.99922 * 318.51565 * 11 9 4 40 40 H 1.08997 * 109.47112 * 59.99692 * 14 12 11 41 41 H 1.09001 * 109.47023 * 180.02562 * 14 12 11 42 42 H 1.08994 * 109.46769 * 300.00125 * 14 12 11 43 43 H 1.09005 * 109.47120 * 90.00229 * 18 17 15 44 44 H 1.09004 * 109.47312 * 209.99755 * 18 17 15 45 45 H 1.08993 * 109.47631 * 330.00035 * 18 17 15 46 46 H 1.09002 * 109.46843 * 209.99884 * 19 17 15 47 47 H 1.08991 * 109.47059 * 329.99933 * 19 17 15 48 48 H 0.97001 * 120.00048 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7103 0.0000 4 6 3.9371 1.5059 -0.0008 5 1 4.2396 0.8600 -0.8251 6 6 4.4011 0.9027 1.3411 7 6 5.7452 1.6148 1.6330 8 6 5.4807 3.0608 1.1422 9 6 4.6230 2.8775 -0.1268 10 1 5.2578 2.8975 -1.0127 11 7 3.6120 3.9400 -0.2092 12 6 4.2092 5.2002 -0.6709 13 1 5.2220 5.2879 -0.2776 14 6 4.2529 5.2137 -2.2003 15 6 3.3784 6.3587 -0.1820 16 8 2.3868 6.1545 0.4858 17 7 3.7380 7.6215 -0.4859 18 6 4.9361 7.8681 -1.2920 19 6 2.9307 8.7476 -0.0100 20 6 3.4376 9.1955 1.3366 21 1 4.2769 8.6915 1.7926 22 6 2.8294 10.2480 1.9870 23 7 1.8070 10.8615 1.4319 24 14 3.4572 10.8028 3.6565 25 1 4.5002 11.8436 3.4722 26 1 2.3323 11.3639 4.4471 27 1 4.0383 9.6419 4.3775 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 3.6768 1.1179 2.1268 34 1 4.5499 -0.1727 1.2448 35 1 5.9647 1.6032 2.7006 36 1 6.5565 1.1552 1.0685 37 1 6.4190 3.5597 0.8997 38 1 4.9313 3.6248 1.8958 39 1 2.8450 3.6641 -0.8041 40 1 3.2402 5.1261 -2.5936 41 1 4.6965 6.1487 -2.5428 42 1 4.8538 4.3759 -2.5539 43 1 4.6664 7.8847 -2.3481 44 1 5.3707 8.8280 -1.0130 45 1 5.6627 7.0752 -1.1150 46 1 3.0044 9.5726 -0.7187 47 1 1.8899 8.4367 0.0785 48 1 1.3792 11.6023 1.8893 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348463322.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:42 Heat of formation + Delta-G solvation = -34.948184 kcal Electronic energy + Delta-G solvation = -25066.150704 eV Core-core repulsion = 21668.189609 eV Total energy + Delta-G solvation = -3397.961095 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.177 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.49686 -38.22761 -34.93783 -34.65065 -32.91053 -32.52106 -30.25291 -29.04878 -27.58277 -26.45356 -25.83371 -23.97307 -23.55394 -21.91967 -20.96158 -20.02735 -18.40364 -16.90652 -16.44071 -16.38687 -15.85357 -15.38267 -15.13375 -14.91752 -14.78851 -14.41857 -14.29587 -14.05735 -13.57324 -13.23976 -12.93352 -12.81948 -12.55433 -12.26344 -12.10482 -11.87573 -11.78140 -11.67761 -11.44342 -11.37491 -11.30678 -11.11520 -11.10495 -11.00709 -10.86375 -10.81022 -10.72291 -10.49240 -10.07562 -9.67188 -9.53385 -8.76540 -8.36360 -8.15176 -7.55620 -7.49332 -5.96806 -4.01023 1.56174 2.54521 3.34907 3.41646 3.46410 3.62802 3.85668 4.29511 4.34109 4.45540 4.55728 4.75577 4.83517 4.88012 5.08389 5.12662 5.19903 5.22147 5.24323 5.26630 5.32144 5.37545 5.42653 5.50606 5.53423 5.61119 5.64697 5.70794 5.75802 5.83702 5.85994 5.92772 5.94268 5.98746 6.04859 6.09707 6.31299 6.35089 6.99774 7.23760 7.53705 7.55519 7.67154 8.00785 8.32567 8.57080 9.00149 9.30119 9.64188 11.11187 Molecular weight = 314.18amu Principal moments of inertia in cm(-1) A = 0.014967 B = 0.003365 C = 0.003311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1870.310151 B = 8319.114660 C = 8454.727019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.112 4.112 3 S -0.198 6.198 4 C -0.068 4.068 5 H 0.084 0.916 6 C -0.115 4.115 7 C -0.119 4.119 8 C -0.118 4.118 9 C 0.105 3.895 10 H 0.050 0.950 11 N -0.650 5.650 12 C 0.068 3.932 13 H 0.096 0.904 14 C -0.190 4.190 15 C 0.510 3.490 16 O -0.516 6.516 17 N -0.607 5.607 18 C 0.084 3.916 19 C 0.247 3.753 20 C -0.523 4.523 21 H 0.056 0.944 22 C 0.060 3.940 23 N -0.896 5.896 24 Si 0.897 3.103 25 H -0.281 1.281 26 H -0.285 1.285 27 H -0.274 1.274 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.063 0.937 35 H 0.071 0.929 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.088 0.912 39 H 0.352 0.648 40 H 0.061 0.939 41 H 0.081 0.919 42 H 0.056 0.944 43 H 0.044 0.956 44 H 0.071 0.929 45 H 0.055 0.945 46 H 0.030 0.970 47 H 0.043 0.957 48 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.612 -21.858 -7.180 24.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.261 4.261 3 S 0.029 5.971 4 C -0.198 4.198 5 H 0.103 0.897 6 C -0.155 4.155 7 C -0.158 4.158 8 C -0.156 4.156 9 C -0.006 4.006 10 H 0.068 0.932 11 N -0.287 5.287 12 C -0.045 4.045 13 H 0.114 0.886 14 C -0.249 4.249 15 C 0.294 3.706 16 O -0.390 6.390 17 N -0.341 5.341 18 C -0.060 4.060 19 C 0.128 3.872 20 C -0.562 4.562 21 H 0.075 0.925 22 C -0.142 4.142 23 N -0.535 5.535 24 Si 0.725 3.275 25 H -0.207 1.207 26 H -0.211 1.211 27 H -0.199 1.199 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.090 0.910 32 H 0.095 0.905 33 H 0.102 0.898 34 H 0.081 0.919 35 H 0.089 0.911 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.106 0.894 39 H 0.178 0.822 40 H 0.080 0.920 41 H 0.099 0.901 42 H 0.075 0.925 43 H 0.063 0.937 44 H 0.090 0.910 45 H 0.074 0.926 46 H 0.048 0.952 47 H 0.061 0.939 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 6.322 -20.712 -6.158 22.514 hybrid contribution 1.334 -0.922 -0.158 1.630 sum 7.656 -21.634 -6.316 23.802 Atomic orbital electron populations 1.21470 0.92411 1.02063 1.03416 1.23440 1.00336 0.98152 1.04148 1.87587 1.03240 1.08715 1.97547 1.23999 0.94839 0.99838 1.01077 0.89724 1.22735 0.98175 0.98809 0.95764 1.22434 0.96465 0.95632 1.01296 1.22521 0.98849 0.96787 0.97440 1.21944 0.92508 0.88145 0.97975 0.93195 1.60317 1.09427 1.00926 1.58018 1.21515 0.98722 0.90575 0.93730 0.88609 1.22695 1.02893 1.03422 0.95930 1.20116 0.86087 0.83334 0.81037 1.90677 1.26734 1.84190 1.37417 1.48120 1.26830 1.07034 1.52107 1.21735 0.88033 1.02048 0.94225 1.19234 0.91676 0.82110 0.94161 1.21454 1.15899 1.15219 1.03611 0.92525 1.24933 0.94884 0.96410 0.97939 1.69938 1.21979 1.22872 1.38746 0.86510 0.78318 0.78678 0.84000 1.20749 1.21117 1.19877 0.91631 0.91492 0.91775 0.90955 0.90480 0.89770 0.91851 0.91055 0.91733 0.91737 0.89368 0.82243 0.91972 0.90077 0.92522 0.93727 0.91015 0.92632 0.95223 0.93909 0.92811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.18 9.92 37.16 0.37 -0.81 16 2 C -0.11 -1.03 6.55 37.16 0.24 -0.79 16 3 S -0.20 -2.48 18.17 -107.50 -1.95 -4.43 16 4 C -0.07 -0.72 3.41 -25.62 -0.09 -0.80 16 5 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 6 C -0.12 -1.09 6.26 -25.07 -0.16 -1.25 16 7 C -0.12 -1.09 6.91 -24.69 -0.17 -1.26 16 8 C -0.12 -1.36 5.83 -25.03 -0.15 -1.50 16 9 C 0.11 1.24 3.08 -66.60 -0.21 1.04 16 10 H 0.05 0.53 7.21 -51.93 -0.37 0.15 16 11 N -0.65 -9.98 4.73 -99.78 -0.47 -10.45 16 12 C 0.07 1.06 2.04 -68.86 -0.14 0.92 16 13 H 0.10 1.39 6.61 -51.93 -0.34 1.04 16 14 C -0.19 -2.37 8.79 37.16 0.33 -2.05 16 15 C 0.51 11.05 7.14 -10.98 -0.08 10.97 16 16 O -0.52 -13.75 16.01 5.56 0.09 -13.66 16 17 N -0.61 -13.20 2.86 -182.95 -0.52 -13.73 16 18 C 0.08 1.34 8.80 59.85 0.53 1.87 16 19 C 0.25 6.67 5.16 -5.19 -0.03 6.64 16 20 C -0.52 -15.24 9.39 -34.44 -0.32 -15.57 16 21 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 22 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 23 N -0.90 -27.24 13.29 55.43 0.74 -26.50 16 24 Si 0.90 22.39 29.54 -169.99 -5.02 17.37 16 25 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 26 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 27 H -0.27 -6.84 7.11 56.52 0.40 -6.44 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.58 8.14 -51.92 -0.42 0.16 16 32 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.08 0.93 7.81 -51.93 -0.41 0.52 16 34 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.09 1.29 8.05 -51.93 -0.42 0.87 16 39 H 0.35 5.54 6.11 -26.26 -0.16 5.38 16 40 H 0.06 0.83 8.13 -51.93 -0.42 0.41 16 41 H 0.08 0.95 4.53 -51.93 -0.24 0.71 16 42 H 0.06 0.58 7.37 -51.93 -0.38 0.19 16 43 H 0.04 0.61 6.95 -51.93 -0.36 0.25 16 44 H 0.07 1.19 8.07 -51.93 -0.42 0.77 16 45 H 0.06 0.73 6.01 -51.93 -0.31 0.42 16 46 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 47 H 0.04 1.30 7.42 -51.93 -0.39 0.92 16 48 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 384.55 15.07 5.80 5.80 Total: -1.00 -34.10 384.55 -9.73 -43.82 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: -8.41 Total: 2.71 kcal Atomic # 6 Polarization: -0.96 SS G_CDS: 0.03 Total: -0.92 kcal Atomic # 7 Polarization: -50.42 SS G_CDS: -0.26 Total: -50.68 kcal Atomic # 8 Polarization: -13.75 SS G_CDS: 0.09 Total: -13.66 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Atomic # 16 Polarization: -2.48 SS G_CDS: -1.95 Total: -4.43 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.10 -9.73 -43.82 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348463322.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.876 kcal (2) G-P(sol) polarization free energy of solvation -34.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds