Wall clock time and date at job start Tue Mar 31 2020 11:58:41
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 S 1.81401 * 109.46866 * 2 1
4 4 C 1.81406 * 102.99914 * 180.02562 * 3 2 1
5 5 H 1.09002 * 110.05140 * 53.58789 * 4 3 2
6 6 C 1.54265 * 110.03153 * 292.17146 * 4 3 2
7 7 C 1.54890 * 104.19259 * 217.10514 * 6 4 3
8 8 C 1.54970 * 102.77885 * 37.91561 * 7 6 4
9 9 C 1.53872 * 110.03206 * 175.00147 * 4 3 2
10 10 H 1.08999 * 110.03257 * 238.62202 * 9 4 3
11 11 N 1.46901 * 110.03120 * 359.97438 * 9 4 3
12 12 C 1.46897 * 110.99838 * 194.56568 * 11 9 4
13 13 H 1.09007 * 109.47318 * 324.99830 * 12 11 9
14 14 C 1.53007 * 109.47356 * 85.00194 * 12 11 9
15 15 C 1.50706 * 109.47210 * 205.00067 * 12 11 9
16 16 O 1.21280 * 119.99834 * 0.02562 * 15 12 11
17 17 N 1.34777 * 120.00145 * 179.97438 * 15 12 11
18 18 C 1.46500 * 119.99803 * 0.02562 * 17 15 12
19 19 C 1.46499 * 119.99928 * 180.02562 * 17 15 12
20 20 C 1.50700 * 109.46996 * 90.00533 * 19 17 15
21 21 H 1.07995 * 120.00172 * 359.97438 * 20 19 17
22 22 C 1.37871 * 119.99969 * 180.02562 * 20 19 17
23 23 N 1.31518 * 119.99903 * 359.97438 * 22 20 19
24 24 Si 1.86797 * 120.00169 * 179.97438 * 22 20 19
25 25 H 1.48499 * 109.46959 * 89.99855 * 24 22 20
26 26 H 1.48502 * 109.47412 * 209.99806 * 24 22 20
27 27 H 1.48500 * 109.46973 * 329.99854 * 24 22 20
28 28 H 1.09004 * 109.46796 * 180.02562 * 1 2 3
29 29 H 1.09002 * 109.47165 * 299.99166 * 1 2 3
30 30 H 1.08991 * 109.47399 * 60.00020 * 1 2 3
31 31 H 1.09002 * 109.47164 * 240.00045 * 2 1 3
32 32 H 1.08996 * 109.47546 * 120.00452 * 2 1 3
33 33 H 1.09003 * 110.48542 * 335.77887 * 6 4 3
34 34 H 1.08993 * 110.49159 * 98.29449 * 6 4 3
35 35 H 1.08998 * 110.75869 * 156.25508 * 7 6 4
36 36 H 1.09004 * 110.75815 * 279.43938 * 7 6 4
37 37 H 1.08999 * 110.52937 * 203.43650 * 8 7 6
38 38 H 1.08998 * 110.47908 * 80.76391 * 8 7 6
39 39 H 1.00903 * 110.99922 * 318.51565 * 11 9 4
40 40 H 1.08997 * 109.47112 * 59.99692 * 14 12 11
41 41 H 1.09001 * 109.47023 * 180.02562 * 14 12 11
42 42 H 1.08994 * 109.46769 * 300.00125 * 14 12 11
43 43 H 1.09005 * 109.47120 * 90.00229 * 18 17 15
44 44 H 1.09004 * 109.47312 * 209.99755 * 18 17 15
45 45 H 1.08993 * 109.47631 * 330.00035 * 18 17 15
46 46 H 1.09002 * 109.46843 * 209.99884 * 19 17 15
47 47 H 1.08991 * 109.47059 * 329.99933 * 19 17 15
48 48 H 0.97001 * 120.00048 * 180.02562 * 23 22 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 16 2.1346 1.7103 0.0000
4 6 3.9371 1.5059 -0.0008
5 1 4.2396 0.8600 -0.8251
6 6 4.4011 0.9027 1.3411
7 6 5.7452 1.6148 1.6330
8 6 5.4807 3.0608 1.1422
9 6 4.6230 2.8775 -0.1268
10 1 5.2578 2.8975 -1.0127
11 7 3.6120 3.9400 -0.2092
12 6 4.2092 5.2002 -0.6709
13 1 5.2220 5.2879 -0.2776
14 6 4.2529 5.2137 -2.2003
15 6 3.3784 6.3587 -0.1820
16 8 2.3868 6.1545 0.4858
17 7 3.7380 7.6215 -0.4859
18 6 4.9361 7.8681 -1.2920
19 6 2.9307 8.7476 -0.0100
20 6 3.4376 9.1955 1.3366
21 1 4.2769 8.6915 1.7926
22 6 2.8294 10.2480 1.9870
23 7 1.8070 10.8615 1.4319
24 14 3.4572 10.8028 3.6565
25 1 4.5002 11.8436 3.4722
26 1 2.3323 11.3639 4.4471
27 1 4.0383 9.6419 4.3775
28 1 -0.3633 -1.0277 0.0005
29 1 -0.3633 0.5137 0.8901
30 1 -0.3634 0.5138 -0.8899
31 1 1.8933 -0.5138 -0.8900
32 1 1.8934 -0.5139 0.8899
33 1 3.6768 1.1179 2.1268
34 1 4.5499 -0.1727 1.2448
35 1 5.9647 1.6032 2.7006
36 1 6.5565 1.1552 1.0685
37 1 6.4190 3.5597 0.8997
38 1 4.9313 3.6248 1.8958
39 1 2.8450 3.6641 -0.8041
40 1 3.2402 5.1261 -2.5936
41 1 4.6965 6.1487 -2.5428
42 1 4.8538 4.3759 -2.5539
43 1 4.6664 7.8847 -2.3481
44 1 5.3707 8.8280 -1.0130
45 1 5.6627 7.0752 -1.1150
46 1 3.0044 9.5726 -0.7187
47 1 1.8899 8.4367 0.0785
48 1 1.3792 11.6023 1.8893
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000348463322.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:58:41
Heat of formation + Delta-G solvation = -57.119975 kcal
Electronic energy + Delta-G solvation = -25067.112145 eV
Core-core repulsion = 21668.189609 eV
Total energy + Delta-G solvation = -3398.922536 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 314.177 amu
Computer time = 0.69 seconds
Orbital eigenvalues (eV)
-40.93732 -39.36351 -36.53855 -36.08238 -34.66672 -33.61399 -31.46701 -29.88410
-29.41312 -27.67233 -27.12907 -25.66400 -24.42895 -23.46308 -21.80062 -20.94162
-19.97671 -18.69038 -18.06094 -17.55702 -17.14403 -16.76890 -16.40320 -16.10093
-15.79966 -15.77731 -15.61630 -14.99960 -14.80458 -14.45721 -14.37704 -14.15188
-13.63733 -13.53709 -13.38275 -13.26772 -13.20162 -12.90928 -12.70540 -12.62683
-12.47612 -12.42223 -12.33807 -12.18876 -12.14414 -11.98767 -11.90503 -11.69204
-11.67243 -11.53962 -10.63492 -10.51194 -10.41195 -9.38748 -9.24798 -8.50913
-8.21260 -6.36320 0.73973 1.35120 1.39163 1.49473 1.75043 1.96321
2.30717 2.44478 3.07510 3.30975 3.49381 3.56496 3.76966 4.05298
4.06966 4.09695 4.12861 4.16825 4.36282 4.40120 4.41260 4.43867
4.55913 4.58463 4.65276 4.73071 4.77283 4.79731 4.86398 4.92852
4.93789 4.99465 5.02309 5.08587 5.15413 5.21612 5.21629 5.23672
5.25592 5.48442 5.58377 5.87247 6.06803 6.09159 6.42410 6.72428
6.88898 7.30505 7.62319 8.85559
Molecular weight = 314.18amu
Principal moments of inertia in cm(-1)
A = 0.014967 B = 0.003365 C = 0.003311
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1870.310151 B = 8319.114660 C = 8454.727019
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.135 4.135
2 C -0.092 4.092
3 S -0.281 6.281
4 C -0.052 4.052
5 H 0.109 0.891
6 C -0.113 4.113
7 C -0.111 4.111
8 C -0.120 4.120
9 C 0.103 3.897
10 H 0.076 0.924
11 N -0.674 5.674
12 C 0.083 3.917
13 H 0.114 0.886
14 C -0.181 4.181
15 C 0.497 3.503
16 O -0.581 6.581
17 N -0.613 5.613
18 C 0.077 3.923
19 C 0.262 3.738
20 C -0.541 4.541
21 H 0.051 0.949
22 C 0.006 3.994
23 N -0.929 5.929
24 Si 0.968 3.032
25 H -0.260 1.260
26 H -0.281 1.281
27 H -0.275 1.275
28 H 0.090 0.910
29 H 0.050 0.950
30 H 0.055 0.945
31 H 0.090 0.910
32 H 0.086 0.914
33 H 0.059 0.941
34 H 0.088 0.912
35 H 0.071 0.929
36 H 0.091 0.909
37 H 0.078 0.922
38 H 0.046 0.954
39 H 0.348 0.652
40 H 0.047 0.953
41 H 0.092 0.908
42 H 0.091 0.909
43 H 0.074 0.926
44 H 0.064 0.936
45 H 0.092 0.908
46 H 0.023 0.977
47 H -0.008 1.008
48 H 0.267 0.733
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.713 -23.954 -7.966 27.423
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.194 4.194
2 C -0.241 4.241
3 S -0.055 6.055
4 C -0.181 4.181
5 H 0.127 0.873
6 C -0.152 4.152
7 C -0.149 4.149
8 C -0.159 4.159
9 C -0.007 4.007
10 H 0.094 0.906
11 N -0.311 5.311
12 C -0.030 4.030
13 H 0.132 0.868
14 C -0.239 4.239
15 C 0.285 3.715
16 O -0.460 6.460
17 N -0.346 5.346
18 C -0.064 4.064
19 C 0.140 3.860
20 C -0.580 4.580
21 H 0.069 0.931
22 C -0.193 4.193
23 N -0.569 5.569
24 Si 0.793 3.207
25 H -0.185 1.185
26 H -0.206 1.206
27 H -0.200 1.200
28 H 0.109 0.891
29 H 0.069 0.931
30 H 0.075 0.925
31 H 0.108 0.892
32 H 0.104 0.896
33 H 0.078 0.922
34 H 0.106 0.894
35 H 0.090 0.910
36 H 0.109 0.891
37 H 0.097 0.903
38 H 0.065 0.935
39 H 0.173 0.827
40 H 0.066 0.934
41 H 0.110 0.890
42 H 0.110 0.890
43 H 0.092 0.908
44 H 0.083 0.917
45 H 0.110 0.890
46 H 0.041 0.959
47 H 0.011 0.989
48 H 0.076 0.924
Dipole moment (debyes) X Y Z Total
from point charges 9.479 -22.816 -6.982 25.674
hybrid contribution 0.312 -0.300 0.073 0.440
sum 9.791 -23.116 -6.909 26.038
Atomic orbital electron populations
1.21493 0.92387 1.03211 1.02262 1.23415 1.00169 0.95130 1.05356
1.87942 1.06766 1.13018 1.97739 1.24020 0.92143 0.99520 1.02412
0.87286 1.22699 0.97707 1.00296 0.94510 1.22420 0.96919 0.93841
1.01762 1.22515 0.98796 0.98146 0.96424 1.22104 0.92013 0.87676
0.98891 0.90615 1.60229 1.10641 1.01735 1.58538 1.21372 0.97550
0.88215 0.95841 0.86814 1.22636 1.02916 1.05497 0.92895 1.21389
0.85843 0.84552 0.79762 1.90635 1.29792 1.85229 1.40374 1.48145
1.27941 1.06018 1.52465 1.22070 0.86420 1.03104 0.94852 1.18684
0.90050 0.83478 0.93758 1.21709 1.15995 1.15581 1.04719 0.93083
1.25879 0.94946 0.96394 1.02056 1.70060 1.23016 1.23330 1.40510
0.85406 0.78214 0.78436 0.78689 1.18507 1.20589 1.19973 0.89146
0.93102 0.92546 0.89168 0.89583 0.92177 0.89363 0.90984 0.89086
0.90344 0.93514 0.82742 0.93380 0.88966 0.89033 0.90779 0.91705
0.88966 0.95905 0.98940 0.92429
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.28 9.92 71.98 0.71 -1.56 16
2 C -0.09 -1.57 6.55 71.98 0.47 -1.10 16
3 S -0.28 -7.08 18.17 -56.49 -1.03 -8.11 16
4 C -0.05 -0.98 3.41 31.32 0.11 -0.87 16
5 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16
6 C -0.11 -1.90 6.26 31.67 0.20 -1.70 16
7 C -0.11 -1.72 6.91 31.91 0.22 -1.50 16
8 C -0.12 -2.58 5.83 31.70 0.18 -2.40 16
9 C 0.10 2.21 3.08 45.64 0.14 2.35 16
10 H 0.08 1.26 7.21 -2.39 -0.02 1.24 16
11 N -0.67 -20.61 4.73 -469.59 -2.22 -22.83 16
12 C 0.08 2.53 2.04 44.17 0.09 2.62 16
13 H 0.11 3.01 6.61 -2.38 -0.02 3.00 16
14 C -0.18 -4.02 8.79 71.98 0.63 -3.39 16
15 C 0.50 22.24 7.14 87.66 0.63 22.87 16
16 O -0.58 -33.13 16.01 -3.03 -0.05 -33.18 16
17 N -0.61 -27.27 2.86 -851.13 -2.43 -29.70 16
18 C 0.08 2.36 8.80 127.77 1.12 3.48 16
19 C 0.26 14.85 5.16 85.63 0.44 15.30 16
20 C -0.54 -32.64 9.39 25.60 0.24 -32.40 16
21 H 0.05 3.05 7.81 -2.91 -0.02 3.03 16
22 C 0.01 0.35 5.46 84.65 0.46 0.82 16
23 N -0.93 -58.15 13.29 21.45 0.28 -57.86 16
24 Si 0.97 46.56 29.54 68.60 2.03 48.59 16
25 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16
26 H -0.28 -13.18 7.11 99.48 0.71 -12.48 16
27 H -0.27 -13.15 7.11 99.48 0.71 -12.44 16
28 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16
29 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16
30 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16
31 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16
32 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16
33 H 0.06 1.31 7.81 -2.39 -0.02 1.29 16
34 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16
35 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16
36 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16
37 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16
38 H 0.05 1.39 8.05 -2.39 -0.02 1.37 16
39 H 0.35 11.14 6.11 -97.98 -0.60 10.54 16
40 H 0.05 1.22 8.13 -2.39 -0.02 1.20 16
41 H 0.09 1.83 4.53 -2.39 -0.01 1.82 16
42 H 0.09 1.44 7.37 -2.39 -0.02 1.43 16
43 H 0.07 1.84 6.95 -2.38 -0.02 1.83 16
44 H 0.06 2.07 8.07 -2.38 -0.02 2.05 16
45 H 0.09 2.13 6.01 -2.39 -0.01 2.12 16
46 H 0.02 1.30 8.07 -2.39 -0.02 1.28 16
47 H -0.01 -0.50 7.42 -2.39 -0.02 -0.51 16
48 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16
Total: -1.00 -80.86 384.55 2.57 -78.29
By element:
Atomic # 1 Polarization: 21.95 SS G_CDS: 0.33 Total: 22.28 kcal
Atomic # 6 Polarization: -3.13 SS G_CDS: 5.65 Total: 2.52 kcal
Atomic # 7 Polarization: -106.03 SS G_CDS: -4.37 Total: -110.40 kcal
Atomic # 8 Polarization: -33.13 SS G_CDS: -0.05 Total: -33.18 kcal
Atomic # 14 Polarization: 46.56 SS G_CDS: 2.03 Total: 48.59 kcal
Atomic # 16 Polarization: -7.08 SS G_CDS: -1.03 Total: -8.11 kcal
Total: -80.86 2.57 -78.29 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000348463322.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 21.173 kcal
(2) G-P(sol) polarization free energy of solvation -80.859 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.685 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.565 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.293 kcal
(6) G-S(sol) free energy of system = (1) + (5) -57.120 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.69 seconds