Wall clock time and date at job start Tue Mar 31 2020 11:58:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 S 1.81401 * 109.46866 * 2 1 4 4 C 1.81406 * 102.99914 * 180.02562 * 3 2 1 5 5 H 1.09002 * 110.05140 * 53.58789 * 4 3 2 6 6 C 1.54265 * 110.03153 * 292.17146 * 4 3 2 7 7 C 1.54890 * 104.19259 * 217.10514 * 6 4 3 8 8 C 1.54970 * 102.77885 * 37.91561 * 7 6 4 9 9 C 1.53872 * 110.03206 * 175.00147 * 4 3 2 10 10 H 1.08999 * 110.03257 * 238.62202 * 9 4 3 11 11 N 1.46901 * 110.03120 * 359.97438 * 9 4 3 12 12 C 1.46897 * 110.99838 * 194.56568 * 11 9 4 13 13 H 1.09007 * 109.47318 * 324.99830 * 12 11 9 14 14 C 1.53007 * 109.47356 * 85.00194 * 12 11 9 15 15 C 1.50706 * 109.47210 * 205.00067 * 12 11 9 16 16 O 1.21280 * 119.99834 * 0.02562 * 15 12 11 17 17 N 1.34777 * 120.00145 * 179.97438 * 15 12 11 18 18 C 1.46500 * 119.99803 * 0.02562 * 17 15 12 19 19 C 1.46499 * 119.99928 * 180.02562 * 17 15 12 20 20 C 1.50700 * 109.46996 * 90.00533 * 19 17 15 21 21 H 1.07995 * 120.00172 * 359.97438 * 20 19 17 22 22 C 1.37871 * 119.99969 * 180.02562 * 20 19 17 23 23 N 1.31518 * 119.99903 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 120.00169 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.46959 * 89.99855 * 24 22 20 26 26 H 1.48502 * 109.47412 * 209.99806 * 24 22 20 27 27 H 1.48500 * 109.46973 * 329.99854 * 24 22 20 28 28 H 1.09004 * 109.46796 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47165 * 299.99166 * 1 2 3 30 30 H 1.08991 * 109.47399 * 60.00020 * 1 2 3 31 31 H 1.09002 * 109.47164 * 240.00045 * 2 1 3 32 32 H 1.08996 * 109.47546 * 120.00452 * 2 1 3 33 33 H 1.09003 * 110.48542 * 335.77887 * 6 4 3 34 34 H 1.08993 * 110.49159 * 98.29449 * 6 4 3 35 35 H 1.08998 * 110.75869 * 156.25508 * 7 6 4 36 36 H 1.09004 * 110.75815 * 279.43938 * 7 6 4 37 37 H 1.08999 * 110.52937 * 203.43650 * 8 7 6 38 38 H 1.08998 * 110.47908 * 80.76391 * 8 7 6 39 39 H 1.00903 * 110.99922 * 318.51565 * 11 9 4 40 40 H 1.08997 * 109.47112 * 59.99692 * 14 12 11 41 41 H 1.09001 * 109.47023 * 180.02562 * 14 12 11 42 42 H 1.08994 * 109.46769 * 300.00125 * 14 12 11 43 43 H 1.09005 * 109.47120 * 90.00229 * 18 17 15 44 44 H 1.09004 * 109.47312 * 209.99755 * 18 17 15 45 45 H 1.08993 * 109.47631 * 330.00035 * 18 17 15 46 46 H 1.09002 * 109.46843 * 209.99884 * 19 17 15 47 47 H 1.08991 * 109.47059 * 329.99933 * 19 17 15 48 48 H 0.97001 * 120.00048 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7103 0.0000 4 6 3.9371 1.5059 -0.0008 5 1 4.2396 0.8600 -0.8251 6 6 4.4011 0.9027 1.3411 7 6 5.7452 1.6148 1.6330 8 6 5.4807 3.0608 1.1422 9 6 4.6230 2.8775 -0.1268 10 1 5.2578 2.8975 -1.0127 11 7 3.6120 3.9400 -0.2092 12 6 4.2092 5.2002 -0.6709 13 1 5.2220 5.2879 -0.2776 14 6 4.2529 5.2137 -2.2003 15 6 3.3784 6.3587 -0.1820 16 8 2.3868 6.1545 0.4858 17 7 3.7380 7.6215 -0.4859 18 6 4.9361 7.8681 -1.2920 19 6 2.9307 8.7476 -0.0100 20 6 3.4376 9.1955 1.3366 21 1 4.2769 8.6915 1.7926 22 6 2.8294 10.2480 1.9870 23 7 1.8070 10.8615 1.4319 24 14 3.4572 10.8028 3.6565 25 1 4.5002 11.8436 3.4722 26 1 2.3323 11.3639 4.4471 27 1 4.0383 9.6419 4.3775 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 3.6768 1.1179 2.1268 34 1 4.5499 -0.1727 1.2448 35 1 5.9647 1.6032 2.7006 36 1 6.5565 1.1552 1.0685 37 1 6.4190 3.5597 0.8997 38 1 4.9313 3.6248 1.8958 39 1 2.8450 3.6641 -0.8041 40 1 3.2402 5.1261 -2.5936 41 1 4.6965 6.1487 -2.5428 42 1 4.8538 4.3759 -2.5539 43 1 4.6664 7.8847 -2.3481 44 1 5.3707 8.8280 -1.0130 45 1 5.6627 7.0752 -1.1150 46 1 3.0044 9.5726 -0.7187 47 1 1.8899 8.4367 0.0785 48 1 1.3792 11.6023 1.8893 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348463322.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:41 Heat of formation + Delta-G solvation = -57.119975 kcal Electronic energy + Delta-G solvation = -25067.112145 eV Core-core repulsion = 21668.189609 eV Total energy + Delta-G solvation = -3398.922536 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.177 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.93732 -39.36351 -36.53855 -36.08238 -34.66672 -33.61399 -31.46701 -29.88410 -29.41312 -27.67233 -27.12907 -25.66400 -24.42895 -23.46308 -21.80062 -20.94162 -19.97671 -18.69038 -18.06094 -17.55702 -17.14403 -16.76890 -16.40320 -16.10093 -15.79966 -15.77731 -15.61630 -14.99960 -14.80458 -14.45721 -14.37704 -14.15188 -13.63733 -13.53709 -13.38275 -13.26772 -13.20162 -12.90928 -12.70540 -12.62683 -12.47612 -12.42223 -12.33807 -12.18876 -12.14414 -11.98767 -11.90503 -11.69204 -11.67243 -11.53962 -10.63492 -10.51194 -10.41195 -9.38748 -9.24798 -8.50913 -8.21260 -6.36320 0.73973 1.35120 1.39163 1.49473 1.75043 1.96321 2.30717 2.44478 3.07510 3.30975 3.49381 3.56496 3.76966 4.05298 4.06966 4.09695 4.12861 4.16825 4.36282 4.40120 4.41260 4.43867 4.55913 4.58463 4.65276 4.73071 4.77283 4.79731 4.86398 4.92852 4.93789 4.99465 5.02309 5.08587 5.15413 5.21612 5.21629 5.23672 5.25592 5.48442 5.58377 5.87247 6.06803 6.09159 6.42410 6.72428 6.88898 7.30505 7.62319 8.85559 Molecular weight = 314.18amu Principal moments of inertia in cm(-1) A = 0.014967 B = 0.003365 C = 0.003311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1870.310151 B = 8319.114660 C = 8454.727019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.092 4.092 3 S -0.281 6.281 4 C -0.052 4.052 5 H 0.109 0.891 6 C -0.113 4.113 7 C -0.111 4.111 8 C -0.120 4.120 9 C 0.103 3.897 10 H 0.076 0.924 11 N -0.674 5.674 12 C 0.083 3.917 13 H 0.114 0.886 14 C -0.181 4.181 15 C 0.497 3.503 16 O -0.581 6.581 17 N -0.613 5.613 18 C 0.077 3.923 19 C 0.262 3.738 20 C -0.541 4.541 21 H 0.051 0.949 22 C 0.006 3.994 23 N -0.929 5.929 24 Si 0.968 3.032 25 H -0.260 1.260 26 H -0.281 1.281 27 H -0.275 1.275 28 H 0.090 0.910 29 H 0.050 0.950 30 H 0.055 0.945 31 H 0.090 0.910 32 H 0.086 0.914 33 H 0.059 0.941 34 H 0.088 0.912 35 H 0.071 0.929 36 H 0.091 0.909 37 H 0.078 0.922 38 H 0.046 0.954 39 H 0.348 0.652 40 H 0.047 0.953 41 H 0.092 0.908 42 H 0.091 0.909 43 H 0.074 0.926 44 H 0.064 0.936 45 H 0.092 0.908 46 H 0.023 0.977 47 H -0.008 1.008 48 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.713 -23.954 -7.966 27.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.241 4.241 3 S -0.055 6.055 4 C -0.181 4.181 5 H 0.127 0.873 6 C -0.152 4.152 7 C -0.149 4.149 8 C -0.159 4.159 9 C -0.007 4.007 10 H 0.094 0.906 11 N -0.311 5.311 12 C -0.030 4.030 13 H 0.132 0.868 14 C -0.239 4.239 15 C 0.285 3.715 16 O -0.460 6.460 17 N -0.346 5.346 18 C -0.064 4.064 19 C 0.140 3.860 20 C -0.580 4.580 21 H 0.069 0.931 22 C -0.193 4.193 23 N -0.569 5.569 24 Si 0.793 3.207 25 H -0.185 1.185 26 H -0.206 1.206 27 H -0.200 1.200 28 H 0.109 0.891 29 H 0.069 0.931 30 H 0.075 0.925 31 H 0.108 0.892 32 H 0.104 0.896 33 H 0.078 0.922 34 H 0.106 0.894 35 H 0.090 0.910 36 H 0.109 0.891 37 H 0.097 0.903 38 H 0.065 0.935 39 H 0.173 0.827 40 H 0.066 0.934 41 H 0.110 0.890 42 H 0.110 0.890 43 H 0.092 0.908 44 H 0.083 0.917 45 H 0.110 0.890 46 H 0.041 0.959 47 H 0.011 0.989 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 9.479 -22.816 -6.982 25.674 hybrid contribution 0.312 -0.300 0.073 0.440 sum 9.791 -23.116 -6.909 26.038 Atomic orbital electron populations 1.21493 0.92387 1.03211 1.02262 1.23415 1.00169 0.95130 1.05356 1.87942 1.06766 1.13018 1.97739 1.24020 0.92143 0.99520 1.02412 0.87286 1.22699 0.97707 1.00296 0.94510 1.22420 0.96919 0.93841 1.01762 1.22515 0.98796 0.98146 0.96424 1.22104 0.92013 0.87676 0.98891 0.90615 1.60229 1.10641 1.01735 1.58538 1.21372 0.97550 0.88215 0.95841 0.86814 1.22636 1.02916 1.05497 0.92895 1.21389 0.85843 0.84552 0.79762 1.90635 1.29792 1.85229 1.40374 1.48145 1.27941 1.06018 1.52465 1.22070 0.86420 1.03104 0.94852 1.18684 0.90050 0.83478 0.93758 1.21709 1.15995 1.15581 1.04719 0.93083 1.25879 0.94946 0.96394 1.02056 1.70060 1.23016 1.23330 1.40510 0.85406 0.78214 0.78436 0.78689 1.18507 1.20589 1.19973 0.89146 0.93102 0.92546 0.89168 0.89583 0.92177 0.89363 0.90984 0.89086 0.90344 0.93514 0.82742 0.93380 0.88966 0.89033 0.90779 0.91705 0.88966 0.95905 0.98940 0.92429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 9.92 71.98 0.71 -1.56 16 2 C -0.09 -1.57 6.55 71.98 0.47 -1.10 16 3 S -0.28 -7.08 18.17 -56.49 -1.03 -8.11 16 4 C -0.05 -0.98 3.41 31.32 0.11 -0.87 16 5 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 6 C -0.11 -1.90 6.26 31.67 0.20 -1.70 16 7 C -0.11 -1.72 6.91 31.91 0.22 -1.50 16 8 C -0.12 -2.58 5.83 31.70 0.18 -2.40 16 9 C 0.10 2.21 3.08 45.64 0.14 2.35 16 10 H 0.08 1.26 7.21 -2.39 -0.02 1.24 16 11 N -0.67 -20.61 4.73 -469.59 -2.22 -22.83 16 12 C 0.08 2.53 2.04 44.17 0.09 2.62 16 13 H 0.11 3.01 6.61 -2.38 -0.02 3.00 16 14 C -0.18 -4.02 8.79 71.98 0.63 -3.39 16 15 C 0.50 22.24 7.14 87.66 0.63 22.87 16 16 O -0.58 -33.13 16.01 -3.03 -0.05 -33.18 16 17 N -0.61 -27.27 2.86 -851.13 -2.43 -29.70 16 18 C 0.08 2.36 8.80 127.77 1.12 3.48 16 19 C 0.26 14.85 5.16 85.63 0.44 15.30 16 20 C -0.54 -32.64 9.39 25.60 0.24 -32.40 16 21 H 0.05 3.05 7.81 -2.91 -0.02 3.03 16 22 C 0.01 0.35 5.46 84.65 0.46 0.82 16 23 N -0.93 -58.15 13.29 21.45 0.28 -57.86 16 24 Si 0.97 46.56 29.54 68.60 2.03 48.59 16 25 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 26 H -0.28 -13.18 7.11 99.48 0.71 -12.48 16 27 H -0.27 -13.15 7.11 99.48 0.71 -12.44 16 28 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.06 1.31 7.81 -2.39 -0.02 1.29 16 34 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.05 1.39 8.05 -2.39 -0.02 1.37 16 39 H 0.35 11.14 6.11 -97.98 -0.60 10.54 16 40 H 0.05 1.22 8.13 -2.39 -0.02 1.20 16 41 H 0.09 1.83 4.53 -2.39 -0.01 1.82 16 42 H 0.09 1.44 7.37 -2.39 -0.02 1.43 16 43 H 0.07 1.84 6.95 -2.38 -0.02 1.83 16 44 H 0.06 2.07 8.07 -2.38 -0.02 2.05 16 45 H 0.09 2.13 6.01 -2.39 -0.01 2.12 16 46 H 0.02 1.30 8.07 -2.39 -0.02 1.28 16 47 H -0.01 -0.50 7.42 -2.39 -0.02 -0.51 16 48 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 Total: -1.00 -80.86 384.55 2.57 -78.29 By element: Atomic # 1 Polarization: 21.95 SS G_CDS: 0.33 Total: 22.28 kcal Atomic # 6 Polarization: -3.13 SS G_CDS: 5.65 Total: 2.52 kcal Atomic # 7 Polarization: -106.03 SS G_CDS: -4.37 Total: -110.40 kcal Atomic # 8 Polarization: -33.13 SS G_CDS: -0.05 Total: -33.18 kcal Atomic # 14 Polarization: 46.56 SS G_CDS: 2.03 Total: 48.59 kcal Atomic # 16 Polarization: -7.08 SS G_CDS: -1.03 Total: -8.11 kcal Total: -80.86 2.57 -78.29 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348463322.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.173 kcal (2) G-P(sol) polarization free energy of solvation -80.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds